Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0008252

Physical Location & Seq

Genomic Coordinates Reverse (-)

7683797 .. 7685232

Gene Structure 1436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g09210.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTTGCAAACTACAACAGGAGAGAAAGATAGCAATCATTTGAAGAGAAAAAGAGAGGAAAAAAAAAAAAAAAGAAAAGAAAAGAGGGAGAGAAGTAAGGGTGTTGCAGCTGCAGAGGAACCAATGGCGACGCCGAAACAGATGTGGGAGCAGCAGCAATTGCAGGTGCAGCTAGTGAAGAACTCCGGTATCGTCAGTTACAATGGGAGTCCGGTAGCTGATGACAAGGAAGAAGAGATGTCAAGATCTGCATTGGCTTTGTTCAAAGCGAAGGAGGAAGAGATTGAGAGGAAGAAGTTGGAGGTGAAAGACAAGGTTCAGGCTCAGCTGGGACGCGTCGAGGAAGCAACTAAGCGCTTGTCTGAGATTCAGGAAGAGCTTGAAACGCTGATAGATCCAATGAGAAAGGAAGTTGCAATTATTCGCAAGAGGATAGACATCATTAACAAAGAGTTAAAGCCGCTAGGTCAGAGCTGCCAGAGGAAGGAGAAAGAATACAAGGAAGCTCTTGAGGCTTTAAACGAGAAGAGCAGAGAGAAATCTCAACTAGTTTCCAAATTGATGGAGCTTGTGGGTGAAAGTGAGAGAATGAGGATAAAGAAGCTGGAGGAGCTGAACAAACATGTTGAAAATCTGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04115 map04115

Pfam Domains

Protein Families

Transcrip_act

Protein Analysis

214

Amino Acids

24.91

Weight (kDa)

9.34

Isoelectric Point (pI)

57.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27740
fragaria_vesca	FvH4_3g29660 FvH4_3g29660 FvH4_3g29660
malus_domestica	MD03G1136300.v1.1 MD11G1158600.v1.1
prunus_persica	Prupe.6G121000_v2.0.a1 Prupe.6G121000_v2.0.a1 Prupe.6G121000_v2.0.a1
pyrus_communis	pycom03g09210 pycom11g12920
rosa_chinensis	RchiOBHm_Chr5g0055021
rosa_laevigata	RLG00000034957
rosa_multiflora	Rmu_co7999198.1_g000001 Rmu_sc0003653.1_g000033 Rmu_sc0031933.1_g000004
rosa_roxburghii	Rroxscaffold_1G00025480
rosa_rugosa	Rorug05G0290100
rosa_samantha	Rh5AG360100 Rh5BG371100 Rh5CG393400 Rh5DG384900
rosa_wichuraiana	Rw5G033880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	154
Acc36I	ACCTGC	1 cut(s)	154
AccII	CGCG	1 cut(s)	336
AciI	CCGC	1 cut(s)	461
AclWI	GGATC	1 cut(s)	389
AcyI	GRCGYC	1 cut(s)	131
AfeI	AGCGCT	1 cut(s)	356
AfiI	CCNNNNNNNGG	1 cut(s)	484
AflIII	ACRYGT	2 cut(s)	334, 622
AgsI	TTSAA	4 cut(s)	43, 265, 383, 629
AhlI	ACTAGT	1 cut(s)	547
AlwI	GGATC	1 cut(s)	389
Aor51HI	AGCGCT	1 cut(s)	356
ApeKI	GCWGC	6 cut(s)	107, 110, 151, 154, 169, 474
AspLEI	GCGC	1 cut(s)	357
AsuHPI	GGTGA	2 cut(s)	316, 587
BaeI	ACNNNNGTAYC	2 cut(s)	172, 205
BbvI	GCAGC	6 cut(s)	97, 119, 163, 166, 181, 461
BccI	CCATC	1 cut(s)	556
BcuI	ACTAGT	1 cut(s)	547
BfaI	CTAG	3 cut(s)	173, 464, 548
BfmI	CTRYAG	1 cut(s)	111
BfoI	RGCGCY	1 cut(s)	358
BfuAI	ACCTGC	1 cut(s)	154
BglII	AGATCT	1 cut(s)	245
BisI	GCNGC	7 cut(s)	108, 111, 152, 155, 170, 461, 475
BlpI	GCTNAGC	1 cut(s)	324
BlsI	GCNGC	7 cut(s)	109, 112, 153, 156, 171, 462, 476
BmiI	GGNNCC	1 cut(s)	120
BpmI	CTGGAG	1 cut(s)	626
Bpu1102I	GCTNAGC	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	530
BsaBI	GATNNNNATC	2 cut(s)	33, 437
BsaHI	GRCGYC	1 cut(s)	131
BsaWI	WCCGGW	2 cut(s)	185, 211
Bsc4I	CCNNNNNNNGG	1 cut(s)	484
Bse8I	GATNNNNATC	2 cut(s)	33, 437
BseJI	GATNNNNATC	2 cut(s)	33, 437
BseLI	CCNNNNNNNGG	1 cut(s)	484
BseMII	CTCAG	2 cut(s)	338, 354
BseRI	GAGGAG	1 cut(s)	623
BseXI	GCAGC	6 cut(s)	97, 119, 163, 166, 181, 461
BseYI	CCCAGC	1 cut(s)	328
BsgI	GTGCAG	1 cut(s)	188
Bsh1236I	CGCG	1 cut(s)	336
BsiSI	CCGG	2 cut(s)	186, 212
BslFI	GGGAC	1 cut(s)	345
BslI	CCNNNNNNNGG	1 cut(s)	484
BsmFI	GGGAC	1 cut(s)	345
Bsp143I	GATC	2 cut(s)	245, 394
Bsp1720I	GCTNAGC	1 cut(s)	324
BspACI	CCGC	1 cut(s)	461
BspCNI	CTCAG	2 cut(s)	337, 355
BspFNI	CGCG	1 cut(s)	336
BspLI	GGNNCC	1 cut(s)	120
BspMAI	CTGCAG	1 cut(s)	115
BspMI	ACCTGC	1 cut(s)	154
BspPI	GGATC	1 cut(s)	389
BspQI	GCTCTTC	2 cut(s)	369, 521
BssMI	GATC	2 cut(s)	245, 394
BssNI	GRCGYC	1 cut(s)	131
Bst6I	CTCTTC	5 cut(s)	38, 228, 273, 369, 521
BstACI	GRCGYC	1 cut(s)	131
BstAPI	GCANNNNNTGC	1 cut(s)	160
BstDEI	CTNAG	3 cut(s)	324, 351, 363
BstFNI	CGCG	1 cut(s)	336
BstH2I	RGCGCY	1 cut(s)	358
BstHHI	GCGC	1 cut(s)	357
BstKTI	GATC	2 cut(s)	248, 397
BstMBI	GATC	2 cut(s)	245, 394
BstMWI	GCNNNNNNNGC	5 cut(s)	160, 169, 385, 512, 610
BstNSI	RCATGY	1 cut(s)	626
BstSFI	CTRYAG	1 cut(s)	111
BstUI	CGCG	1 cut(s)	336
BstV1I	GCAGC	6 cut(s)	97, 119, 163, 166, 181, 461
BstX2I	RGATCY	2 cut(s)	245, 394
BstXI	CCANNNNNNTGG	1 cut(s)	562
BstYI	RGATCY	2 cut(s)	245, 394
BveI	ACCTGC	1 cut(s)	154
CfoI	GCGC	1 cut(s)	357
CseI	GACGC	3 cut(s)	139, 325, 342
CviAII	CATG	1 cut(s)	623
DdeI	CTNAG	3 cut(s)	324, 351, 363
DpnI	GATC	2 cut(s)	247, 396
DpnII	GATC	2 cut(s)	245, 394
DraI	TTTAAA	1 cut(s)	519
Eam1104I	CTCTTC	5 cut(s)	38, 228, 273, 369, 521
EarI	CTCTTC	5 cut(s)	38, 228, 273, 369, 521
Eco47III	AGCGCT	1 cut(s)	356
FaeI	CATG	1 cut(s)	626
FaiI	YATR	1 cut(s)	624
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	1 cut(s)	622
Fnu4HI	GCNGC	7 cut(s)	108, 111, 152, 155, 170, 461, 475
Fsp4HI	GCNGC	7 cut(s)	108, 111, 152, 155, 170, 461, 475
FspBI	CTAG	3 cut(s)	173, 464, 548
GlaI	GCGC	1 cut(s)	356
GluI	GCNGC	7 cut(s)	108, 111, 152, 155, 170, 461, 475
GsaI	CCCAGC	1 cut(s)	332
GsuI	CTGGAG	1 cut(s)	626
HaeII	RGCGCY	1 cut(s)	358
HapII	CCGG	2 cut(s)	186, 212
HgaI	GACGC	3 cut(s)	139, 325, 342
HhaI	GCGC	1 cut(s)	357
Hin1I	GRCGYC	1 cut(s)	131
Hin1II	CATG	1 cut(s)	626
Hin6I	GCGC	1 cut(s)	355
HinP1I	GCGC	1 cut(s)	355
HinfI	GANTC	2 cut(s)	208, 367
HpaII	CCGG	2 cut(s)	186, 212
HphI	GGTGA	2 cut(s)	316, 587
Hpy188I	TCNGA	2 cut(s)	364, 471
Hpy188III	TCNNGA	3 cut(s)	243, 371, 509
Hpy99I	CGWCG	2 cut(s)	133, 341
HpyAV	CCTTC	2 cut(s)	265, 478
HpyCH4V	TGCA	7 cut(s)	7, 107, 113, 163, 169, 251, 416
HpyF10VI	GCNNNNNNNGC	5 cut(s)	160, 169, 385, 512, 610
HpyF3I	CTNAG	3 cut(s)	324, 351, 363
Hsp92I	GRCGYC	1 cut(s)	131
Hsp92II	CATG	1 cut(s)	626
HspAI	GCGC	1 cut(s)	355
Kzo9I	GATC	2 cut(s)	245, 394
LguI	GCTCTTC	2 cut(s)	369, 521
LmnI	GCTCC	3 cut(s)	148, 565, 610
LpnPI	CCDG	9 cut(s)	3, 149, 199, 225, 305, 314, 356, 491, 590
Lsp1109I	GCAGC	6 cut(s)	97, 119, 163, 166, 181, 461
MaeI	CTAG	3 cut(s)	173, 464, 548
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	2 cut(s)	247, 396
MboI	GATC	2 cut(s)	245, 394
MboII	GAAGA	8 cut(s)	55, 190, 242, 245, 290, 304, 386, 538
MfeI	CAATTG	1 cut(s)	158
MflI	RGATCY	2 cut(s)	245, 394
MluCI	AATT	3 cut(s)	158, 417, 557
MluI	ACGCGT	1 cut(s)	334
MlyI	GAGTC	1 cut(s)	217
MmeI	TCCRAC	1 cut(s)	279
MseI	TTAA	4 cut(s)	444, 455, 518, 640
MspA1I	CMGCKG	2 cut(s)	110, 328
MspI	CCGG	2 cut(s)	186, 212
MunI	CAATTG	1 cut(s)	158
MvnI	CGCG	1 cut(s)	336
MwoI	GCNNNNNNNGC	5 cut(s)	160, 169, 385, 512, 610
NdeII	GATC	2 cut(s)	245, 394
NlaIII	CATG	1 cut(s)	626
NlaIV	GGNNCC	1 cut(s)	120
NspI	RCATGY	1 cut(s)	626
PaqCI	CACCTGC	1 cut(s)	154
PciI	ACATGT	1 cut(s)	622
PciSI	GCTCTTC	2 cut(s)	369, 521
PfeI	GAWTC	1 cut(s)	367
PkrI	GCNGC	7 cut(s)	109, 112, 153, 156, 171, 462, 476
PleI	GAGTC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	216
PscI	ACATGT	1 cut(s)	622
PspFI	CCCAGC	1 cut(s)	328
PspN4I	GGNNCC	1 cut(s)	120
PstI	CTGCAG	1 cut(s)	115
PsuI	RGATCY	2 cut(s)	245, 394
PvuII	CAGCTG	2 cut(s)	110, 328
SapI	GCTCTTC	2 cut(s)	369, 521
SaqAI	TTAA	4 cut(s)	444, 455, 518, 640
SatI	GCNGC	7 cut(s)	108, 111, 152, 155, 170, 461, 475
Sau3AI	GATC	2 cut(s)	245, 394
SchI	GAGTC	1 cut(s)	217
SfcI	CTRYAG	1 cut(s)	111
SmlI	CTYRAG	1 cut(s)	509
SmoI	CTYRAG	1 cut(s)	509
SpeI	ACTAGT	1 cut(s)	547
Sse9I	AATT	3 cut(s)	158, 417, 557
SsiI	CCGC	1 cut(s)	461
SspMI	CTAG	3 cut(s)	173, 464, 548
TaqI	TCGA	1 cut(s)	339
TasI	AATT	3 cut(s)	158, 417, 557
TauI	GCSGC	1 cut(s)	463
TfiI	GAWTC	1 cut(s)	367
Tru1I	TTAA	4 cut(s)	444, 455, 518, 640
Tru9I	TTAA	4 cut(s)	444, 455, 518, 640
TseI	GCWGC	6 cut(s)	107, 110, 151, 154, 169, 474
XceI	RCATGY	1 cut(s)	626
XspI	CTAG	3 cut(s)	173, 464, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.