Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008252

Physical Location & Seq

Genomic Coordinates Reverse (-)

8998718 .. 9001837

Gene Structure 3120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G121000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCGACGCCGAAACAGATGTGGGAGCAGCAGCAATCGCAGATGCAGCGAGTTAAGAACTCCGGTATTGTCAGTTACAATGGGAGCCCTGTAAATGATGACAAGGAAGAAGAAATGTCAAGGTCTGCGGTTGCTTTGTTCCTGGCAAAGGAAGAAGAGATTGAGAGGAAGAAGTCGGAGGTGAAGGACAAGGTCCAGGCTCAGATGGGAAGGGTTGAAGAAACAACTAAGCGCTTGGCTGAGATTCAAGAAGAGCTTGAAGCACTGACAGATCCAATGAGAAAGGAAGTTGCAAATGTTCGGAAGAGGATAGACATAGTTAACAAGGAGTTAAAGCCACTAGGCCAGAGCTGCCAGAGGAAGGAGAAAGAATACAAAGAAGCACTCGAGGCTTTAAACGAGAAGAACAAAGAGAAAGCTCAACTAGTTTCCAGATTGAAGGAGCTTGTGGGTGAAAGTGAGAAGTTGAGGATGAAGAAGCTGGAGGAGCTGAACAAACATATATTGGTCCCAAGGAATGACATGTTAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04115 map04115

Pfam Domains

Protein Families

Transcrip_act

Protein Analysis

178

Amino Acids

20.64

Weight (kDa)

7.73

Isoelectric Point (pI)

60.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27740
fragaria_vesca	FvH4_3g29660 FvH4_3g29660 FvH4_3g29660
malus_domestica	MD03G1136300.v1.1 MD11G1158600.v1.1
prunus_persica	Prupe.6G121000_v2.0.a1 Prupe.6G121000_v2.0.a1 Prupe.6G121000_v2.0.a1
pyrus_communis	pycom03g09210 pycom11g12920
rosa_chinensis	RchiOBHm_Chr5g0055021
rosa_laevigata	RLG00000034957
rosa_multiflora	Rmu_co7999198.1_g000001 Rmu_sc0003653.1_g000033 Rmu_sc0031933.1_g000004
rosa_roxburghii	Rroxscaffold_1G00025480
rosa_rugosa	Rorug05G0290100
rosa_samantha	Rh5AG360100 Rh5BG371100 Rh5CG393400 Rh5DG384900
rosa_wichuraiana	Rw5G033880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	128
AclWI	GGATC	1 cut(s)	266
AcyI	GRCGYC	1 cut(s)	8
AfeI	AGCGCT	1 cut(s)	233
AfiI	CCNNNNNNNGG	2 cut(s)	148, 361
AflIII	ACRYGT	1 cut(s)	522
AgsI	TTSAA	4 cut(s)	218, 248, 260, 439
AhlI	ACTAGT	1 cut(s)	424
AjnI	CCWGG	2 cut(s)	141, 195
AluBI	AGCT	6 cut(s)	256, 351, 419, 445, 481, 490
AluI	AGCT	6 cut(s)	256, 351, 419, 445, 481, 490
AlwI	GGATC	1 cut(s)	266
Ama87I	CYCGRG	1 cut(s)	386
Aor51HI	AGCGCT	1 cut(s)	233
AoxI	GGCC	1 cut(s)	343
ApeKI	GCWGC	4 cut(s)	28, 31, 46, 351
AspLEI	GCGC	1 cut(s)	234
AspS9I	GGNCC	2 cut(s)	193, 508
AsuHPI	GGTGA	2 cut(s)	193, 464
AvaI	CYCGRG	1 cut(s)	386
AvaII	GGWCC	2 cut(s)	193, 508
BanII	GRGCYC	1 cut(s)	89
BbvI	GCAGC	4 cut(s)	40, 43, 58, 338
BccI	CCATC	1 cut(s)	199
BciT130I	CCWGG	2 cut(s)	143, 197
BcuI	ACTAGT	1 cut(s)	424
BfaI	CTAG	2 cut(s)	341, 425
BfoI	RGCGCY	1 cut(s)	235
BisI	GCNGC	4 cut(s)	29, 32, 47, 352
BlsI	GCNGC	4 cut(s)	30, 33, 48, 353
Bme1390I	CCNGG	2 cut(s)	143, 197
Bme18I	GGWCC	2 cut(s)	193, 508
BmeT110I	CYCGRG	1 cut(s)	386
BmgT120I	GGNCC	2 cut(s)	193, 508
BmiI	GGNNCC	2 cut(s)	86, 510
BmrFI	CCNGG	2 cut(s)	143, 197
BmsI	GCATC	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	503
BsaHI	GRCGYC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	512
BsaWI	WCCGGW	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 361
BseBI	CCWGG	2 cut(s)	143, 197
BseDI	CCNNGG	1 cut(s)	512
BseGI	GGATG	1 cut(s)	477
BseLI	CCNNNNNNNGG	2 cut(s)	148, 361
BseMII	CTCAG	2 cut(s)	215, 231
BseRI	GAGGAG	1 cut(s)	500
BseXI	GCAGC	4 cut(s)	40, 43, 58, 338
BshFI	GGCC	1 cut(s)	345
BsiHKCI	CYCGRG	1 cut(s)	386
BsiSI	CCGG	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	494
BslI	CCNNNNNNNGG	2 cut(s)	148, 361
BsmFI	GGGAC	1 cut(s)	494
BsnI	GGCC	1 cut(s)	345
BsoBI	CYCGRG	1 cut(s)	386
Bsp1286I	GDGCHC	1 cut(s)	89
Bsp143I	GATC	1 cut(s)	271
BspACI	CCGC	1 cut(s)	128
BspANI	GGCC	1 cut(s)	345
BspCNI	CTCAG	2 cut(s)	214, 232
BspLI	GGNNCC	2 cut(s)	86, 510
BspPI	GGATC	1 cut(s)	266
BspQI	GCTCTTC	1 cut(s)	246
BssECI	CCNNGG	1 cut(s)	512
BssMI	GATC	1 cut(s)	271
BssNI	GRCGYC	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	512
Bst2UI	CCWGG	2 cut(s)	143, 197
Bst6I	CTCTTC	3 cut(s)	150, 246, 299
BstACI	GRCGYC	1 cut(s)	8
BstDEI	CTNAG	3 cut(s)	201, 228, 240
BstENI	CCTNNNNNAGG	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	477
BstH2I	RGCGCY	1 cut(s)	235
BstHHI	GCGC	1 cut(s)	234
BstKTI	GATC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	5 cut(s)	37, 46, 351, 389, 487
BstNI	CCWGG	2 cut(s)	143, 197
BstNSI	RCATGY	1 cut(s)	526
BstSCI	CCNGG	2 cut(s)	141, 195
BstV1I	GCAGC	4 cut(s)	40, 43, 58, 338
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BsuRI	GGCC	1 cut(s)	345
BtsCI	GGATG	1 cut(s)	477
BtsIMutI	CAGTG	1 cut(s)	263
CfoI	GCGC	1 cut(s)	234
Cfr13I	GGNCC	2 cut(s)	193, 508
CseI	GACGC	1 cut(s)	16
CviAII	CATG	1 cut(s)	523
DdeI	CTNAG	3 cut(s)	201, 228, 240
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
DraI	TTTAAA	1 cut(s)	396
Eam1104I	CTCTTC	3 cut(s)	150, 246, 299
EarI	CTCTTC	3 cut(s)	150, 246, 299
Eco130I	CCWWGG	1 cut(s)	512
Eco24I	GRGCYC	1 cut(s)	89
Eco47I	GGWCC	2 cut(s)	193, 508
Eco47III	AGCGCT	1 cut(s)	233
Eco88I	CYCGRG	1 cut(s)	386
EcoNI	CCTNNNNNAGG	1 cut(s)	146
EcoRII	CCWGG	2 cut(s)	141, 195
EcoT14I	CCWWGG	1 cut(s)	512
EcoT38I	GRGCYC	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	512
FaeI	CATG	1 cut(s)	526
FaiI	YATR	4 cut(s)	317, 501, 503, 524
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FaqI	GGGAC	1 cut(s)	494
FatI	CATG	1 cut(s)	522
Fnu4HI	GCNGC	4 cut(s)	29, 32, 47, 352
FokI	GGATG	1 cut(s)	484
FriOI	GRGCYC	1 cut(s)	89
Fsp4HI	GCNGC	4 cut(s)	29, 32, 47, 352
FspBI	CTAG	2 cut(s)	341, 425
GlaI	GCGC	1 cut(s)	233
GluI	GCNGC	4 cut(s)	29, 32, 47, 352
GsuI	CTGGAG	1 cut(s)	503
HaeII	RGCGCY	1 cut(s)	235
HaeIII	GGCC	1 cut(s)	345
HapII	CCGG	1 cut(s)	63
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	1 cut(s)	234
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	1 cut(s)	526
Hin6I	GCGC	1 cut(s)	232
HinP1I	GCGC	1 cut(s)	232
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HinfI	GANTC	1 cut(s)	244
HpaI	GTTAAC	1 cut(s)	322
HpaII	CCGG	1 cut(s)	63
HphI	GGTGA	2 cut(s)	193, 464
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	3 cut(s)	178, 204, 303
Hpy188III	TCNNGA	2 cut(s)	248, 432
Hpy8I	GTNNAC	1 cut(s)	322
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	4 cut(s)	178, 204, 355, 433
HpyCH4V	TGCA	2 cut(s)	46, 293
HpyF10VI	GCNNNNNNNGC	5 cut(s)	37, 46, 351, 389, 487
HpyF3I	CTNAG	3 cut(s)	201, 228, 240
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	1 cut(s)	526
HspAI	GCGC	1 cut(s)	232
KspAI	GTTAAC	1 cut(s)	322
Kzo9I	GATC	1 cut(s)	271
LguI	GCTCTTC	1 cut(s)	246
LmnI	GCTCC	4 cut(s)	25, 84, 442, 487
Lsp1109I	GCAGC	4 cut(s)	40, 43, 58, 338
LweI	GCATC	1 cut(s)	33
MaeI	CTAG	2 cut(s)	341, 425
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	1 cut(s)	89
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	7 cut(s)	159, 172, 300, 351, 382, 462, 478
MseI	TTAA	4 cut(s)	54, 321, 332, 395
MspI	CCGG	1 cut(s)	63
MspR9I	CCNGG	2 cut(s)	143, 197
MvaI	CCWGG	2 cut(s)	143, 197
MwoI	GCNNNNNNNGC	5 cut(s)	37, 46, 351, 389, 487
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	1 cut(s)	526
NlaIV	GGNNCC	2 cut(s)	86, 510
NspI	RCATGY	1 cut(s)	526
PaeR7I	CTCGAG	1 cut(s)	386
PciI	ACATGT	1 cut(s)	522
PciSI	GCTCTTC	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	244
PflFI	GACNNNGTC	1 cut(s)	191
PkrI	GCNGC	4 cut(s)	30, 33, 48, 353
PscI	ACATGT	1 cut(s)	522
Psp6I	CCWGG	2 cut(s)	141, 195
PspGI	CCWGG	2 cut(s)	141, 195
PspN4I	GGNNCC	2 cut(s)	86, 510
PspPI	GGNCC	2 cut(s)	193, 508
PspXI	VCTCGAGB	1 cut(s)	386
PsuI	RGATCY	1 cut(s)	271
PsyI	GACNNNGTC	1 cut(s)	191
SapI	GCTCTTC	1 cut(s)	246
SaqAI	TTAA	4 cut(s)	54, 321, 332, 395
SatI	GCNGC	4 cut(s)	29, 32, 47, 352
Sau3AI	GATC	1 cut(s)	271
Sau96I	GGNCC	2 cut(s)	193, 508
ScrFI	CCNGG	2 cut(s)	143, 197
SduI	GDGCHC	1 cut(s)	89
SetI	ASST	9 cut(s)	125, 183, 195, 258, 353, 421, 447, 483, 492
SfaNI	GCATC	1 cut(s)	33
Sfr274I	CTCGAG	1 cut(s)	386
SinI	GGWCC	2 cut(s)	193, 508
SlaI	CTCGAG	1 cut(s)	386
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
SpeI	ACTAGT	1 cut(s)	424
SsiI	CCGC	1 cut(s)	128
SspMI	CTAG	2 cut(s)	341, 425
StyD4I	CCNGG	2 cut(s)	141, 195
StyI	CCWWGG	1 cut(s)	512
TaqI	TCGA	1 cut(s)	387
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	4 cut(s)	54, 321, 332, 395
Tru9I	TTAA	4 cut(s)	54, 321, 332, 395
TscAI	CASTG	1 cut(s)	270
TseI	GCWGC	4 cut(s)	28, 31, 46, 351
TspDTI	ATGAA	1 cut(s)	488
TspRI	CASTG	1 cut(s)	270
Tth111I	GACNNNGTC	1 cut(s)	191
VpaK11BI	GGWCC	2 cut(s)	193, 508
XagI	CCTNNNNNAGG	1 cut(s)	146
XceI	RCATGY	1 cut(s)	526
XhoI	CTCGAG	1 cut(s)	386
XspI	CTAG	2 cut(s)	341, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.