Rh5CG393400

Transcriptional activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0008252
Physical Location & Seq
Reverse (-)
51824941 .. 51827139
2199 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG393400.1

Sequence Viewer

Length: 444 bp
ATGGCAACGCCGAAACAGTTAAGGGAGCAGCAGCAATTGCAGATGCAGCGTGTCAAGAACTCCGGTGCCATTGTTAGTTACAATGGGAGTCCGGTTGATGACAAGGAAGAAGAGATGTCAAGGTCTGCATTGGCTATTTTTCGTGTCAAGGAGGAAGAGATTGAGAGGAAGAAGATGGAGGTGAGAGACAAGGTTCAAGCTCAGCTGGGACGAGCTGAAGAAGCAAGTAGGCGCTTAGCTGAGATTCGTGAAGAGCTAGAAGCACTGACAGATCCCATGAGAAAGGAAGTTGCAAATATTCGGAAGAGAATAGATATAGTTAACAAAGATTTAAAGCCGCTGGGACAGAGCTGCCAGAGGAAGGTGGAACTTTTTTGGCATCAATCTTTACACACACACACACACACATATATATTGTTGTTATTATTTATGATCATGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04115 map04115
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

147

Amino Acids

17.27

Weight (kDa)

9.07

Isoelectric Point (pI)

64.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 21 - 123 1.7e-46 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 65
AciI CCGC 1 cut(s) 338
AclWI GGATC 1 cut(s) 266
AcuI CTGAAG 1 cut(s) 237
AfiI CCNNNNNNNGG 1 cut(s) 361
AgsI TTSAA 1 cut(s) 197
AluBI AGCT 6 cut(s) 200, 205, 215, 239, 256, 351
AluI AGCT 6 cut(s) 200, 205, 215, 239, 256, 351
Alw26I GTCTC 1 cut(s) 180
AlwI GGATC 1 cut(s) 266
ApeKI GCWGC 4 cut(s) 28, 31, 46, 351
AspLEI GCGC 1 cut(s) 234
AsuHPI GGTGA 1 cut(s) 193
BanI GGYRCC 1 cut(s) 65
BbvI GCAGC 4 cut(s) 40, 43, 58, 338
BccI CCATC 1 cut(s) 169
BclI TGATCA 1 cut(s) 432
BcoDI GTCTC 1 cut(s) 180
BfaI CTAG 1 cut(s) 257
BfoI RGCGCY 1 cut(s) 235
BisI GCNGC 5 cut(s) 29, 32, 47, 338, 352
BlpI GCTNAGC 2 cut(s) 201, 235
BlsI GCNGC 5 cut(s) 30, 33, 48, 339, 353
BmiI GGNNCC 1 cut(s) 67
BmsI GCATC 2 cut(s) 33, 388
Bpu1102I GCTNAGC 2 cut(s) 201, 235
BsaWI WCCGGW 2 cut(s) 62, 91
Bsc4I CCNNNNNNNGG 1 cut(s) 361
BseLI CCNNNNNNNGG 1 cut(s) 361
BseMII CTCAG 2 cut(s) 215, 231
BseXI GCAGC 4 cut(s) 40, 43, 58, 338
BseYI CCCAGC 2 cut(s) 205, 340
BshNI GGYRCC 1 cut(s) 65
BsiSI CCGG 2 cut(s) 63, 92
BslFI GGGAC 2 cut(s) 222, 357
BslI CCNNNNNNNGG 1 cut(s) 361
BsmAI GTCTC 1 cut(s) 180
BsmFI GGGAC 2 cut(s) 222, 357
Bsp143I GATC 2 cut(s) 271, 432
Bsp1720I GCTNAGC 2 cut(s) 201, 235
BspACI CCGC 1 cut(s) 338
BspCNI CTCAG 2 cut(s) 214, 232
BspLI GGNNCC 1 cut(s) 67
BspPI GGATC 1 cut(s) 266
BspQI GCTCTTC 1 cut(s) 246
BspT107I GGYRCC 1 cut(s) 65
BssMI GATC 2 cut(s) 271, 432
Bst4CI ACNGT 1 cut(s) 18
Bst6I CTCTTC 4 cut(s) 105, 150, 246, 299
BstAPI GCANNNNNTGC 1 cut(s) 37
BstDEI CTNAG 3 cut(s) 201, 235, 240
BstH2I RGCGCY 1 cut(s) 235
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 2 cut(s) 274, 435
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 2 cut(s) 271, 432
BstMWI GCNNNNNNNGC 3 cut(s) 37, 46, 221
BstV1I GCAGC 4 cut(s) 40, 43, 58, 338
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BtsIMutI CAGTG 1 cut(s) 263
CfoI GCGC 1 cut(s) 234
CviAII CATG 2 cut(s) 277, 436
CviJI RGCY 8 cut(s) 134, 200, 205, 215, 239, 256, 337, 351
CviKI_1 RGCY 8 cut(s) 134, 200, 205, 215, 239, 256, 337, 351
DdeI CTNAG 3 cut(s) 201, 235, 240
DpnI GATC 2 cut(s) 273, 434
DpnII GATC 2 cut(s) 271, 432
DraI TTTAAA 1 cut(s) 333
Eam1104I CTCTTC 4 cut(s) 105, 150, 246, 299
EarI CTCTTC 4 cut(s) 105, 150, 246, 299
Eco57I CTGAAG 1 cut(s) 237
FaeI CATG 2 cut(s) 280, 439
FaiI YATR 7 cut(s) 278, 317, 409, 411, 413, 431, 437
FaqI GGGAC 2 cut(s) 222, 357
FatI CATG 2 cut(s) 276, 435
FbaI TGATCA 1 cut(s) 432
Fnu4HI GCNGC 5 cut(s) 29, 32, 47, 338, 352
Fsp4HI GCNGC 5 cut(s) 29, 32, 47, 338, 352
FspBI CTAG 1 cut(s) 257
GlaI GCGC 1 cut(s) 233
GluI GCNGC 5 cut(s) 29, 32, 47, 338, 352
GsaI CCCAGC 2 cut(s) 209, 344
HaeII RGCGCY 1 cut(s) 235
HapII CCGG 2 cut(s) 63, 92
HhaI GCGC 1 cut(s) 234
Hin1II CATG 2 cut(s) 280, 439
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 2 cut(s) 88, 244
HpaI GTTAAC 1 cut(s) 322
HpaII CCGG 2 cut(s) 63, 92
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 1 cut(s) 303
Hpy188III TCNNGA 2 cut(s) 55, 248
Hpy8I GTNNAC 1 cut(s) 322
HpyAV CCTTC 1 cut(s) 355
HpyCH4III ACNGT 1 cut(s) 18
HpyCH4V TGCA 4 cut(s) 40, 46, 128, 293
HpyF10VI GCNNNNNNNGC 3 cut(s) 37, 46, 221
HpyF3I CTNAG 3 cut(s) 201, 235, 240
Hsp92II CATG 2 cut(s) 280, 439
HspAI GCGC 1 cut(s) 232
Ksp22I TGATCA 1 cut(s) 432
KspAI GTTAAC 1 cut(s) 322
Kzo9I GATC 2 cut(s) 271, 432
LguI GCTCTTC 1 cut(s) 246
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 5 cut(s) 76, 105, 191, 326, 368
Lsp1109I GCAGC 4 cut(s) 40, 43, 58, 338
LweI GCATC 2 cut(s) 33, 388
MaeI CTAG 1 cut(s) 257
MaeIII GTNAC 1 cut(s) 77
MalI GATC 2 cut(s) 273, 434
MboI GATC 2 cut(s) 271, 432
MboII GAAGA 8 cut(s) 119, 122, 167, 181, 184, 230, 263, 316
MfeI CAATTG 1 cut(s) 35
MflI RGATCY 1 cut(s) 271
MluCI AATT 1 cut(s) 35
MlyI GAGTC 1 cut(s) 97
MnlI CCTC 4 cut(s) 145, 159, 172, 351
MseI TTAA 3 cut(s) 20, 321, 332
MspA1I CMGCKG 2 cut(s) 205, 340
MspI CCGG 2 cut(s) 63, 92
MunI CAATTG 1 cut(s) 35
MwoI GCNNNNNNNGC 3 cut(s) 37, 46, 221
NdeII GATC 2 cut(s) 271, 432
NlaIII CATG 2 cut(s) 280, 439
NlaIV GGNNCC 1 cut(s) 67
PciSI GCTCTTC 1 cut(s) 246
PfeI GAWTC 1 cut(s) 244
PkrI GCNGC 5 cut(s) 30, 33, 48, 339, 353
PleI GAGTC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 96
PspFI CCCAGC 2 cut(s) 205, 340
PspN4I GGNNCC 1 cut(s) 67
PsuI RGATCY 1 cut(s) 271
PvuII CAGCTG 1 cut(s) 205
SapI GCTCTTC 1 cut(s) 246
SaqAI TTAA 3 cut(s) 20, 321, 332
SatI GCNGC 5 cut(s) 29, 32, 47, 338, 352
Sau3AI GATC 2 cut(s) 271, 432
SchI GAGTC 1 cut(s) 97
SfaNI GCATC 2 cut(s) 33, 388
Sse9I AATT 1 cut(s) 35
SsiI CCGC 1 cut(s) 338
SspI AATATT 1 cut(s) 298
SspMI CTAG 1 cut(s) 257
TaaI ACNGT 1 cut(s) 18
TasI AATT 1 cut(s) 35
TauI GCSGC 1 cut(s) 340
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 3 cut(s) 20, 321, 332
Tru9I TTAA 3 cut(s) 20, 321, 332
TscAI CASTG 1 cut(s) 270
TseI GCWGC 4 cut(s) 28, 31, 46, 351
TspRI CASTG 1 cut(s) 270
XspI CTAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.