Rh5BG371100

Transcriptional activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0008252
Physical Location & Seq
Reverse (-)
58337642 .. 58339847
2206 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG371100.1

Sequence Viewer

Length: 519 bp
ATGGCAACGCCGAAACAGTTATGGGAGCAGCAGCAATTGCAGATGCAGCGTGTCAAGAACTCCGGTGCCATTGTTAGTTACAATGGGAGTCCGGTTGATGACAAGGAAGAAGAGATGTCAAGGTCTGCATTGGCTATTTTTCGTGTCAAGGAGGAAGAGATTGAGAGGAAGAAGATGGAGGTGAGAGACAAGGTTCAAGCTCAGCTGGGACGAGCTGAAGAAGCAAGTAGGCGCTTAGCTGAGATTCGCGAAGAGCTTGAAGCACTGACAGATCCAATGAGAAAGGAAGTTGCAAATATTCGGAAGAGAATAGATATAGTTAACAAAGATTTAAAGCCGCTGGGACAGAGCTGCCAGAGGAAGGAAAAGGAATACAAGGAAGCAGTTGAGGCTTTGAATGAGAAGAACAGAGAGAAAGCTCAACTACTTTCCAGATTGATGGAGGTAAATTACTTAATTTTTGGAAAGAGCTTCATATATAATATTGAAATACTCAAATCTTGTTCAGGTGATCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04115 map04115
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

172

Amino Acids

20.03

Weight (kDa)

8.45

Isoelectric Point (pI)

63.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 21 - 149 1.2e-60 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 65
AccII CGCG 1 cut(s) 249
AciI CCGC 1 cut(s) 338
AclWI GGATC 1 cut(s) 266
AcuI CTGAAG 1 cut(s) 237
AfiI CCNNNNNNNGG 1 cut(s) 361
AgsI TTSAA 4 cut(s) 197, 260, 397, 488
AluBI AGCT 8 cut(s) 200, 205, 215, 239, 256, 351, 419, 471
AluI AGCT 8 cut(s) 200, 205, 215, 239, 256, 351, 419, 471
Alw26I GTCTC 1 cut(s) 180
AlwI GGATC 1 cut(s) 266
ApeKI GCWGC 4 cut(s) 28, 31, 46, 351
AspLEI GCGC 1 cut(s) 234
AsuHPI GGTGA 1 cut(s) 193
BanI GGYRCC 1 cut(s) 65
BbvI GCAGC 4 cut(s) 40, 43, 58, 338
BccI CCATC 2 cut(s) 169, 433
BcoDI GTCTC 1 cut(s) 180
BfoI RGCGCY 1 cut(s) 235
BisI GCNGC 5 cut(s) 29, 32, 47, 338, 352
BlpI GCTNAGC 2 cut(s) 201, 235
BlsI GCNGC 5 cut(s) 30, 33, 48, 339, 353
BmiI GGNNCC 1 cut(s) 67
BmsI GCATC 1 cut(s) 33
Bpu1102I GCTNAGC 2 cut(s) 201, 235
BsaWI WCCGGW 2 cut(s) 62, 91
Bsc4I CCNNNNNNNGG 1 cut(s) 361
BseLI CCNNNNNNNGG 1 cut(s) 361
BseMII CTCAG 2 cut(s) 215, 231
BseXI GCAGC 4 cut(s) 40, 43, 58, 338
BseYI CCCAGC 2 cut(s) 205, 340
Bsh1236I CGCG 1 cut(s) 249
BshNI GGYRCC 1 cut(s) 65
BsiSI CCGG 2 cut(s) 63, 92
BslFI GGGAC 2 cut(s) 222, 357
BslI CCNNNNNNNGG 1 cut(s) 361
BsmAI GTCTC 1 cut(s) 180
BsmFI GGGAC 2 cut(s) 222, 357
Bsp143I GATC 2 cut(s) 271, 511
Bsp1720I GCTNAGC 2 cut(s) 201, 235
Bsp68I TCGCGA 1 cut(s) 249
BspACI CCGC 1 cut(s) 338
BspCNI CTCAG 2 cut(s) 214, 232
BspFNI CGCG 1 cut(s) 249
BspLI GGNNCC 1 cut(s) 67
BspPI GGATC 1 cut(s) 266
BspQI GCTCTTC 1 cut(s) 246
BspT107I GGYRCC 1 cut(s) 65
BssMI GATC 2 cut(s) 271, 511
Bst4CI ACNGT 1 cut(s) 18
Bst6I CTCTTC 4 cut(s) 105, 150, 246, 299
BstAPI GCANNNNNTGC 1 cut(s) 37
BstDEI CTNAG 3 cut(s) 201, 235, 240
BstFNI CGCG 1 cut(s) 249
BstH2I RGCGCY 1 cut(s) 235
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 2 cut(s) 274, 514
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 2 cut(s) 271, 511
BstMWI GCNNNNNNNGC 4 cut(s) 37, 46, 221, 389
BstUI CGCG 1 cut(s) 249
BstV1I GCAGC 4 cut(s) 40, 43, 58, 338
BstX2I RGATCY 1 cut(s) 271
BstXI CCANNNNNNTGG 1 cut(s) 439
BstYI RGATCY 1 cut(s) 271
BtsIMutI CAGTG 1 cut(s) 263
BtuMI TCGCGA 1 cut(s) 249
CfoI GCGC 1 cut(s) 234
DdeI CTNAG 3 cut(s) 201, 235, 240
DpnI GATC 2 cut(s) 273, 513
DpnII GATC 2 cut(s) 271, 511
DraI TTTAAA 1 cut(s) 333
Eam1104I CTCTTC 4 cut(s) 105, 150, 246, 299
EarI CTCTTC 4 cut(s) 105, 150, 246, 299
Eco57I CTGAAG 1 cut(s) 237
FaiI YATR 5 cut(s) 22, 317, 476, 478, 480
FaqI GGGAC 2 cut(s) 222, 357
Fnu4HI GCNGC 5 cut(s) 29, 32, 47, 338, 352
Fsp4HI GCNGC 5 cut(s) 29, 32, 47, 338, 352
GlaI GCGC 1 cut(s) 233
GluI GCNGC 5 cut(s) 29, 32, 47, 338, 352
GsaI CCCAGC 2 cut(s) 209, 344
HaeII RGCGCY 1 cut(s) 235
HapII CCGG 2 cut(s) 63, 92
HhaI GCGC 1 cut(s) 234
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 2 cut(s) 88, 244
HpaI GTTAAC 1 cut(s) 322
HpaII CCGG 2 cut(s) 63, 92
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 1 cut(s) 303
Hpy188III TCNNGA 3 cut(s) 55, 248, 432
Hpy8I GTNNAC 1 cut(s) 322
HpyAV CCTTC 1 cut(s) 355
HpyCH4III ACNGT 1 cut(s) 18
HpyCH4V TGCA 4 cut(s) 40, 46, 128, 293
HpyF10VI GCNNNNNNNGC 4 cut(s) 37, 46, 221, 389
HpyF3I CTNAG 3 cut(s) 201, 235, 240
HspAI GCGC 1 cut(s) 232
KspAI GTTAAC 1 cut(s) 322
Kzo9I GATC 2 cut(s) 271, 511
LguI GCTCTTC 1 cut(s) 246
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 7 cut(s) 76, 105, 191, 326, 368, 445, 492
Lsp1109I GCAGC 4 cut(s) 40, 43, 58, 338
LweI GCATC 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 77
MalI GATC 2 cut(s) 273, 513
MboI GATC 2 cut(s) 271, 511
MboII GAAGA 9 cut(s) 119, 122, 167, 181, 184, 230, 263, 316, 415
MfeI CAATTG 1 cut(s) 35
MflI RGATCY 1 cut(s) 271
MluCI AATT 3 cut(s) 35, 448, 456
MlyI GAGTC 1 cut(s) 97
MnlI CCTC 6 cut(s) 145, 159, 172, 351, 382, 436
MseI TTAA 3 cut(s) 321, 332, 455
MspA1I CMGCKG 2 cut(s) 205, 340
MspI CCGG 2 cut(s) 63, 92
MunI CAATTG 1 cut(s) 35
MvnI CGCG 1 cut(s) 249
MwoI GCNNNNNNNGC 4 cut(s) 37, 46, 221, 389
NdeII GATC 2 cut(s) 271, 511
NlaIV GGNNCC 1 cut(s) 67
NruI TCGCGA 1 cut(s) 249
PciSI GCTCTTC 1 cut(s) 246
PfeI GAWTC 1 cut(s) 244
PkrI GCNGC 5 cut(s) 30, 33, 48, 339, 353
PleI GAGTC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 96
PspFI CCCAGC 2 cut(s) 205, 340
PspN4I GGNNCC 1 cut(s) 67
PsuI RGATCY 1 cut(s) 271
PvuII CAGCTG 1 cut(s) 205
RruI TCGCGA 1 cut(s) 249
SapI GCTCTTC 1 cut(s) 246
SaqAI TTAA 3 cut(s) 321, 332, 455
SatI GCNGC 5 cut(s) 29, 32, 47, 338, 352
Sau3AI GATC 2 cut(s) 271, 511
SchI GAGTC 1 cut(s) 97
SfaNI GCATC 1 cut(s) 33
Sse9I AATT 3 cut(s) 35, 448, 456
SsiI CCGC 1 cut(s) 338
SspI AATATT 2 cut(s) 298, 484
TaaI ACNGT 1 cut(s) 18
TasI AATT 3 cut(s) 35, 448, 456
TauI GCSGC 1 cut(s) 340
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 3 cut(s) 321, 332, 455
Tru9I TTAA 3 cut(s) 321, 332, 455
TscAI CASTG 1 cut(s) 270
TseI GCWGC 4 cut(s) 28, 31, 46, 351
TspDTI ATGAA 1 cut(s) 463
TspRI CASTG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.