Rorug05G0290100

Transcriptional activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0008252
Physical Location & Seq
Forward (+)
33316502 .. 33317388
887 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0290100.1

Sequence Viewer

Length: 501 bp
ATGACGAGACTACACGAGTTCAGTTTTTATAACTCAAAGGCTGTGAGTCAGGCTCCTCGAAGCATATGTGGGGTGAAGTGGTCAGCCCCACCGGTTGGTGTGTTCAAAGTGAATGTCGACGGGGCGTTTCATCATGTTACCAGGAAGGGAGGGATTGGCTTTGTTGTGCGGAACTCGATAGGGAACATGGTAGCTGGAGGTGGTAGGCCTTTGTCCGGTCTGGTTTCTGCTGAACATGCTGAGTTATTGGCATGTATGATGGCAGTTGATTTCTTATTTCAGCAGGGCTTTAAGCCAGTGATACTGGAAACTGATGCACTGATGGTGCAGCGCCAATTGACCTCTCAAGAGGGAGTTAATACATCGGTGCTGGGACGATTGTATGAAGATTTGGTAGCGGTTTTGGCTGCAAACACAGACCTCTCGGTCACCTATAAGGGTAGGAATGCTAATATGGCAGCTCATATCCTTGCTGCCCATGCGTGCAGTGAACCTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04115 map04115
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

166

Amino Acids

17.79

Weight (kDa)

8.52

Isoelectric Point (pI)

36.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 38 - 161 8.3e-23 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 30
AasI GACNNNNNNGTC 1 cut(s) 425
AccB7I CCANNNNNTGG 1 cut(s) 95
AccI GTMKAC 1 cut(s) 117
AciI CCGC 2 cut(s) 169, 398
AfiI CCNNNNNNNGG 2 cut(s) 95, 215
AgeI ACCGGT 1 cut(s) 91
AgsI TTSAA 1 cut(s) 106
AjnI CCWGG 1 cut(s) 140
AluBI AGCT 2 cut(s) 194, 461
AluI AGCT 2 cut(s) 194, 461
AoxI GGCC 1 cut(s) 206
ApeKI GCWGC 4 cut(s) 328, 407, 458, 473
ArsI GACNNNNNNTTYG 2 cut(s) 99, 131
AsiGI ACCGGT 1 cut(s) 91
AspLEI GCGC 1 cut(s) 333
AsuHPI GGTGA 2 cut(s) 85, 421
BauI CACGAG 1 cut(s) 14
BbvI GCAGC 4 cut(s) 340, 394, 460, 470
BccI CCATC 2 cut(s) 253, 316
BciT130I CCWGG 1 cut(s) 142
BfoI RGCGCY 1 cut(s) 334
BisI GCNGC 4 cut(s) 329, 408, 459, 474
BlsI GCNGC 4 cut(s) 330, 409, 460, 475
Bme1390I CCNGG 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 54
BmrFI CCNGG 1 cut(s) 142
BmsI GCATC 1 cut(s) 304
BplI GAGNNNNNCTC 2 cut(s) 37, 69
BpmI CTGGAG 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 330
BsaWI WCCGGW 2 cut(s) 91, 215
Bsc4I CCNNNNNNNGG 2 cut(s) 95, 215
Bse118I RCCGGY 1 cut(s) 91
Bse1I ACTGG 2 cut(s) 296, 309
BseBI CCWGG 1 cut(s) 142
BseLI CCNNNNNNNGG 2 cut(s) 95, 215
BseMII CTCAG 1 cut(s) 231
BseNI ACTGG 2 cut(s) 296, 309
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 4 cut(s) 340, 394, 460, 470
BseYI CCCAGC 1 cut(s) 370
BsgI GTGCAG 1 cut(s) 347
BshFI GGCC 1 cut(s) 208
BshTI ACCGGT 1 cut(s) 91
BsiSI CCGG 2 cut(s) 92, 216
BslFI GGGAC 1 cut(s) 387
BslI CCNNNNNNNGG 2 cut(s) 95, 215
BsmFI GGGAC 1 cut(s) 387
BsmI GAATGC 1 cut(s) 451
BsnI GGCC 1 cut(s) 208
BspACI CCGC 2 cut(s) 169, 398
BspANI GGCC 1 cut(s) 208
BspCNI CTCAG 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 54
BsrFI RCCGGY 1 cut(s) 91
BsrI ACTGG 2 cut(s) 296, 309
BssAI RCCGGY 1 cut(s) 91
BssSI CACGAG 1 cut(s) 14
Bst2BI CACGAG 1 cut(s) 14
Bst2UI CCWGG 1 cut(s) 142
BstC8I GCNNGC 1 cut(s) 484
BstDEI CTNAG 1 cut(s) 240
BstEII GGTNACC 1 cut(s) 427
BstH2I RGCGCY 1 cut(s) 334
BstHHI GCGC 1 cut(s) 333
BstMWI GCNNNNNNNGC 4 cut(s) 236, 404, 455, 479
BstNI CCWGG 1 cut(s) 142
BstNSI RCATGY 2 cut(s) 239, 255
BstPI GGTNACC 1 cut(s) 427
BstSCI CCNGG 1 cut(s) 140
BstV1I GCAGC 4 cut(s) 340, 394, 460, 470
BsuRI GGCC 1 cut(s) 208
BtsI GCAGTG 1 cut(s) 493
BtsIMutI CAGTG 3 cut(s) 303, 317, 493
Cac8I GCNNGC 1 cut(s) 484
CfoI GCGC 1 cut(s) 333
Cfr10I RCCGGY 1 cut(s) 91
CspAI ACCGGT 1 cut(s) 91
CviAII CATG 5 cut(s) 134, 187, 236, 252, 479
DdeI CTNAG 1 cut(s) 240
DrdI GACNNNNNNGTC 1 cut(s) 425
DseDI GACNNNNNNGTC 1 cut(s) 425
Eco147I AGGCCT 1 cut(s) 208
Eco91I GGTNACC 1 cut(s) 427
EcoO65I GGTNACC 1 cut(s) 427
EcoRII CCWGG 1 cut(s) 140
FaeI CATG 5 cut(s) 137, 190, 239, 255, 482
FaqI GGGAC 1 cut(s) 387
FatI CATG 5 cut(s) 133, 186, 235, 251, 478
FauNDI CATATG 1 cut(s) 65
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 4 cut(s) 329, 408, 459, 474
Fsp4HI GCNGC 4 cut(s) 329, 408, 459, 474
GlaI GCGC 1 cut(s) 332
GluI GCNGC 4 cut(s) 329, 408, 459, 474
GsaI CCCAGC 1 cut(s) 374
GsuI CTGGAG 1 cut(s) 216
HaeII RGCGCY 1 cut(s) 334
HaeIII GGCC 1 cut(s) 208
HapII CCGG 2 cut(s) 92, 216
HhaI GCGC 1 cut(s) 333
Hin1II CATG 5 cut(s) 137, 190, 239, 255, 482
Hin6I GCGC 1 cut(s) 331
HinP1I GCGC 1 cut(s) 331
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 1 cut(s) 46
HpaII CCGG 2 cut(s) 92, 216
HphI GGTGA 2 cut(s) 85, 421
Hpy166II GTNNAC 2 cut(s) 118, 491
Hpy188III TCNNGA 1 cut(s) 347
Hpy8I GTNNAC 2 cut(s) 118, 491
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 139
HpyCH4V TGCA 4 cut(s) 317, 328, 410, 486
HpyF10VI GCNNNNNNNGC 4 cut(s) 236, 404, 455, 479
HpyF3I CTNAG 1 cut(s) 240
Hsp92II CATG 5 cut(s) 137, 190, 239, 255, 482
HspAI GCGC 1 cut(s) 331
LmnI GCTCC 1 cut(s) 58
Lsp1109I GCAGC 4 cut(s) 340, 394, 460, 470
LweI GCATC 1 cut(s) 304
MaeIII GTNAC 2 cut(s) 136, 427
MboII GAAGA 1 cut(s) 398
MfeI CAATTG 1 cut(s) 335
MluCI AATT 1 cut(s) 335
MlyI GAGTC 1 cut(s) 55
MnlI CCTC 6 cut(s) 66, 143, 191, 343, 352, 431
MseI TTAA 2 cut(s) 291, 357
MspI CCGG 2 cut(s) 92, 216
MspR9I CCNGG 1 cut(s) 142
MunI CAATTG 1 cut(s) 335
Mva1269I GAATGC 1 cut(s) 451
MvaI CCWGG 1 cut(s) 142
MwoI GCNNNNNNNGC 4 cut(s) 236, 404, 455, 479
NdeI CATATG 1 cut(s) 65
NlaIII CATG 5 cut(s) 137, 190, 239, 255, 482
NlaIV GGNNCC 1 cut(s) 54
NmuCI GTSAC 1 cut(s) 427
NspI RCATGY 2 cut(s) 239, 255
PceI AGGCCT 1 cut(s) 208
PctI GAATGC 1 cut(s) 451
PflMI CCANNNNNTGG 1 cut(s) 95
PinAI ACCGGT 1 cut(s) 91
PkrI GCNGC 4 cut(s) 330, 409, 460, 475
PleI GAGTC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 54
PsiI TTATAA 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 140
PspEI GGTNACC 1 cut(s) 427
PspFI CCCAGC 1 cut(s) 370
PspGI CCWGG 1 cut(s) 140
PspN4I GGNNCC 1 cut(s) 54
SalI GTCGAC 1 cut(s) 116
SaqAI TTAA 2 cut(s) 291, 357
SatI GCNGC 4 cut(s) 329, 408, 459, 474
SchI GAGTC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 142
SetI ASST 7 cut(s) 196, 202, 344, 423, 434, 463, 496
SfaNI GCATC 1 cut(s) 304
SmlI CTYRAG 1 cut(s) 345
SmoI CTYRAG 1 cut(s) 345
Sse9I AATT 1 cut(s) 335
SseBI AGGCCT 1 cut(s) 208
SsiI CCGC 2 cut(s) 169, 398
StuI AGGCCT 1 cut(s) 208
StyD4I CCNGG 1 cut(s) 140
TaqI TCGA 3 cut(s) 58, 117, 176
TaqII GACCGA 1 cut(s) 415
TasI AATT 1 cut(s) 335
Tru1I TTAA 2 cut(s) 291, 357
Tru9I TTAA 2 cut(s) 291, 357
TscAI CASTG 3 cut(s) 303, 324, 493
TseFI GTSAC 1 cut(s) 427
TseI GCWGC 4 cut(s) 328, 407, 458, 473
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 2 cut(s) 119, 399
TspRI CASTG 3 cut(s) 303, 324, 493
Van91I CCANNNNNTGG 1 cut(s) 95
XceI RCATGY 2 cut(s) 239, 255
XmiI GTMKAC 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.