Rroxscaffold_1G00025480

Transcriptional activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0008252
Physical Location & Seq
Forward (+)
31974132 .. 31975731
1600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00025480.1

Sequence Viewer

Length: 519 bp
ATGGCAACGCCGAAACAGTTATGGGAGCAGCAGCAATTGCAGATGCAGCGTGTCAAGAACTCTGGTGCCATTGTTACTTACAATGGGAGTCCGGTTGATGACAAGGAAGAAGAGATGTCAAGGTCTGCATTGGCTATTTTTCGTGTCAAGGAGGAAGAGATTGAGAGGAAGAAGATGGAGGTGAGAGACAAGGTTCAAGCTCAGCTGGGACGAGCTGAAGAAGCAAGTAGGCGCTTAGCTGAGATTCGCGAAGAGCTTGAAGCACTGACAGATCCAATGAGAAAGGAAGTTGCAAATATTCGGAAGAGAATAGATATAGTTAACAAAGATTTAAAGCCGCTGGGACAGAGCTGCCAGAGGAAGGAAAAGGAATACAAGGAAGCAGTTGAGGCTTTGAACGAGAAGAACAGAGAGAAAGCTCAACTACTTTCCAGATTGATGGAGCTTGTGGGTGAAAGTGAGAACATGAGGATGAAGAAGCTGGAGGAGCTGAACAAACATGTTGAAACTCTGCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04115 map04115
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

172

Amino Acids

20.19

Weight (kDa)

8.57

Isoelectric Point (pI)

59.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 20 - 170 1e-71 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 65
AccII CGCG 1 cut(s) 249
AciI CCGC 1 cut(s) 338
AclWI GGATC 1 cut(s) 266
AcuI CTGAAG 1 cut(s) 237
AfiI CCNNNNNNNGG 1 cut(s) 361
AflIII ACRYGT 1 cut(s) 499
AgsI TTSAA 4 cut(s) 197, 260, 397, 506
Alw26I GTCTC 1 cut(s) 180
AlwI GGATC 1 cut(s) 266
ApeKI GCWGC 4 cut(s) 28, 31, 46, 351
AspLEI GCGC 1 cut(s) 234
AsuHPI GGTGA 2 cut(s) 193, 464
BanI GGYRCC 1 cut(s) 65
BbvI GCAGC 4 cut(s) 40, 43, 58, 338
BccI CCATC 2 cut(s) 169, 433
BcoDI GTCTC 1 cut(s) 180
BfoI RGCGCY 1 cut(s) 235
BisI GCNGC 5 cut(s) 29, 32, 47, 338, 352
BlpI GCTNAGC 2 cut(s) 201, 235
BlsI GCNGC 5 cut(s) 30, 33, 48, 339, 353
BmiI GGNNCC 1 cut(s) 67
BmsI GCATC 1 cut(s) 33
BpmI CTGGAG 1 cut(s) 503
Bpu1102I GCTNAGC 2 cut(s) 201, 235
BsaWI WCCGGW 1 cut(s) 91
Bsc4I CCNNNNNNNGG 1 cut(s) 361
BseGI GGATG 1 cut(s) 477
BseLI CCNNNNNNNGG 1 cut(s) 361
BseMII CTCAG 2 cut(s) 215, 231
BseRI GAGGAG 1 cut(s) 500
BseXI GCAGC 4 cut(s) 40, 43, 58, 338
BseYI CCCAGC 2 cut(s) 205, 340
Bsh1236I CGCG 1 cut(s) 249
BshNI GGYRCC 1 cut(s) 65
BsiSI CCGG 1 cut(s) 92
BslFI GGGAC 2 cut(s) 222, 357
BslI CCNNNNNNNGG 1 cut(s) 361
BsmAI GTCTC 1 cut(s) 180
BsmFI GGGAC 2 cut(s) 222, 357
Bsp143I GATC 1 cut(s) 271
Bsp1720I GCTNAGC 2 cut(s) 201, 235
Bsp68I TCGCGA 1 cut(s) 249
BspACI CCGC 1 cut(s) 338
BspCNI CTCAG 2 cut(s) 214, 232
BspFNI CGCG 1 cut(s) 249
BspLI GGNNCC 1 cut(s) 67
BspPI GGATC 1 cut(s) 266
BspQI GCTCTTC 1 cut(s) 246
BspT107I GGYRCC 1 cut(s) 65
BssMI GATC 1 cut(s) 271
Bst4CI ACNGT 1 cut(s) 18
Bst6I CTCTTC 4 cut(s) 105, 150, 246, 299
BstAPI GCANNNNNTGC 1 cut(s) 37
BstDEI CTNAG 3 cut(s) 201, 235, 240
BstF5I GGATG 1 cut(s) 477
BstFNI CGCG 1 cut(s) 249
BstH2I RGCGCY 1 cut(s) 235
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 1 cut(s) 274
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 1 cut(s) 271
BstMWI GCNNNNNNNGC 5 cut(s) 37, 46, 221, 389, 487
BstNSI RCATGY 1 cut(s) 503
BstUI CGCG 1 cut(s) 249
BstV1I GCAGC 4 cut(s) 40, 43, 58, 338
BstX2I RGATCY 1 cut(s) 271
BstXI CCANNNNNNTGG 1 cut(s) 439
BstYI RGATCY 1 cut(s) 271
BtsCI GGATG 1 cut(s) 477
BtsIMutI CAGTG 1 cut(s) 263
BtuMI TCGCGA 1 cut(s) 249
CfoI GCGC 1 cut(s) 234
CviAII CATG 2 cut(s) 466, 500
DdeI CTNAG 3 cut(s) 201, 235, 240
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
DraI TTTAAA 1 cut(s) 333
Eam1104I CTCTTC 4 cut(s) 105, 150, 246, 299
EarI CTCTTC 4 cut(s) 105, 150, 246, 299
Eco57I CTGAAG 1 cut(s) 237
FaeI CATG 2 cut(s) 469, 503
FaiI YATR 4 cut(s) 22, 317, 467, 501
FaqI GGGAC 2 cut(s) 222, 357
FatI CATG 2 cut(s) 465, 499
Fnu4HI GCNGC 5 cut(s) 29, 32, 47, 338, 352
FokI GGATG 1 cut(s) 484
Fsp4HI GCNGC 5 cut(s) 29, 32, 47, 338, 352
GlaI GCGC 1 cut(s) 233
GluI GCNGC 5 cut(s) 29, 32, 47, 338, 352
GsaI CCCAGC 2 cut(s) 209, 344
GsuI CTGGAG 1 cut(s) 503
HaeII RGCGCY 1 cut(s) 235
HapII CCGG 1 cut(s) 92
HhaI GCGC 1 cut(s) 234
Hin1II CATG 2 cut(s) 469, 503
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 2 cut(s) 88, 244
HpaI GTTAAC 1 cut(s) 322
HpaII CCGG 1 cut(s) 92
HphI GGTGA 2 cut(s) 193, 464
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 1 cut(s) 303
Hpy188III TCNNGA 3 cut(s) 55, 248, 432
Hpy8I GTNNAC 1 cut(s) 322
HpyAV CCTTC 1 cut(s) 355
HpyCH4III ACNGT 1 cut(s) 18
HpyCH4V TGCA 4 cut(s) 40, 46, 128, 293
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 46, 221, 389, 487
HpyF3I CTNAG 3 cut(s) 201, 235, 240
Hsp92II CATG 2 cut(s) 469, 503
HspAI GCGC 1 cut(s) 232
KspAI GTTAAC 1 cut(s) 322
Kzo9I GATC 1 cut(s) 271
LguI GCTCTTC 1 cut(s) 246
LmnI GCTCC 3 cut(s) 25, 442, 487
LpnPI CCDG 7 cut(s) 48, 105, 191, 326, 368, 445, 467
Lsp1109I GCAGC 4 cut(s) 40, 43, 58, 338
LweI GCATC 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 73
MalI GATC 1 cut(s) 273
MboI GATC 1 cut(s) 271
MfeI CAATTG 1 cut(s) 35
MflI RGATCY 1 cut(s) 271
MluCI AATT 1 cut(s) 35
MlyI GAGTC 1 cut(s) 97
MnlI CCTC 7 cut(s) 145, 159, 172, 351, 382, 462, 478
MseI TTAA 3 cut(s) 321, 332, 517
MslI CAYNNNNRTG 1 cut(s) 470
MspA1I CMGCKG 2 cut(s) 205, 340
MspI CCGG 1 cut(s) 92
MunI CAATTG 1 cut(s) 35
MvnI CGCG 1 cut(s) 249
MwoI GCNNNNNNNGC 5 cut(s) 37, 46, 221, 389, 487
NdeII GATC 1 cut(s) 271
NlaIII CATG 2 cut(s) 469, 503
NlaIV GGNNCC 1 cut(s) 67
NruI TCGCGA 1 cut(s) 249
NspI RCATGY 1 cut(s) 503
PciI ACATGT 1 cut(s) 499
PciSI GCTCTTC 1 cut(s) 246
PfeI GAWTC 1 cut(s) 244
PkrI GCNGC 5 cut(s) 30, 33, 48, 339, 353
PleI GAGTC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 96
PscI ACATGT 1 cut(s) 499
PspFI CCCAGC 2 cut(s) 205, 340
PspN4I GGNNCC 1 cut(s) 67
PsuI RGATCY 1 cut(s) 271
PvuII CAGCTG 1 cut(s) 205
RruI TCGCGA 1 cut(s) 249
RseI CAYNNNNRTG 1 cut(s) 470
SapI GCTCTTC 1 cut(s) 246
SaqAI TTAA 3 cut(s) 321, 332, 517
SatI GCNGC 5 cut(s) 29, 32, 47, 338, 352
Sau3AI GATC 1 cut(s) 271
SchI GAGTC 1 cut(s) 97
SfaNI GCATC 1 cut(s) 33
SmiMI CAYNNNNRTG 1 cut(s) 470
Sse9I AATT 1 cut(s) 35
SsiI CCGC 1 cut(s) 338
SspI AATATT 1 cut(s) 298
TaaI ACNGT 1 cut(s) 18
TasI AATT 1 cut(s) 35
TauI GCSGC 1 cut(s) 340
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 3 cut(s) 321, 332, 517
Tru9I TTAA 3 cut(s) 321, 332, 517
TscAI CASTG 1 cut(s) 270
TseI GCWGC 4 cut(s) 28, 31, 46, 351
TspDTI ATGAA 1 cut(s) 488
TspRI CASTG 1 cut(s) 270
XceI RCATGY 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.