Rh5AG360100

Transcriptional activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0008252
Physical Location & Seq
Reverse (-)
60608860 .. 60611237
2378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG360100.1

Sequence Viewer

Length: 546 bp
ATGGCAACGCCGAAACAGTTATGGGAGCAGCAGCAATTGCAGATGCAGCGTGTCAAGAACTCCGGTGCCATTGTTAGTTACAATGGGAGTCCGGTTGATGACAAGGAAGAAGAGATGTCAAGGTCTGCATTGGCTATTTTTCGTGTCAAGGAGGAAGAGATTGAGAGGAAGAAGATGGAGGTGAGAGACAAGGTTCAAGCTCAGCTGGGACGAGCTGAAGAAGCAAGTAGGCGCTTAGCTGAGATTCGTGAAGAGCTTGAAGCACTGACAGATCCAATGAGAAAGGAAGTTGCAAATATTCGGAAGAGAATAGATATAGTTAACAAAGATTTAAAGCCGCTGGGACAGAGCTGCCAGAGGAAGGAAAAGGAATACAAGGAAGCAGTTGAGGCTTTGAATGAGAAGAACAGAGAGAAAGCTCAACTACTTTCCAGATTGATGGAGGTAAATTACTTAATTTTTGGAAAGAGCTTCATAATATTGAAATACTCAAATCTTGTTCAGGTGATCTCTAAACTGTTGTATGTTCCTTACTTAATTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04115 map04115
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

181

Amino Acids

21.2

Weight (kDa)

9.19

Isoelectric Point (pI)

52.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 21 - 149 1.3e-60 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 65
AciI CCGC 1 cut(s) 338
AclWI GGATC 1 cut(s) 266
AcuI CTGAAG 1 cut(s) 237
AfiI CCNNNNNNNGG 1 cut(s) 361
AgsI TTSAA 4 cut(s) 197, 260, 397, 484
AluBI AGCT 8 cut(s) 200, 205, 215, 239, 256, 351, 419, 471
AluI AGCT 8 cut(s) 200, 205, 215, 239, 256, 351, 419, 471
Alw26I GTCTC 1 cut(s) 180
AlwI GGATC 1 cut(s) 266
ApeKI GCWGC 4 cut(s) 28, 31, 46, 351
AspLEI GCGC 1 cut(s) 234
AsuHPI GGTGA 2 cut(s) 193, 517
BanI GGYRCC 1 cut(s) 65
BbvI GCAGC 4 cut(s) 40, 43, 58, 338
BccI CCATC 2 cut(s) 169, 433
BcoDI GTCTC 1 cut(s) 180
BfoI RGCGCY 1 cut(s) 235
BisI GCNGC 5 cut(s) 29, 32, 47, 338, 352
BlpI GCTNAGC 2 cut(s) 201, 235
BlsI GCNGC 5 cut(s) 30, 33, 48, 339, 353
BmiI GGNNCC 1 cut(s) 67
BmsI GCATC 1 cut(s) 33
Bpu1102I GCTNAGC 2 cut(s) 201, 235
BsaWI WCCGGW 2 cut(s) 62, 91
Bsc4I CCNNNNNNNGG 1 cut(s) 361
BseLI CCNNNNNNNGG 1 cut(s) 361
BseMII CTCAG 2 cut(s) 215, 231
BseXI GCAGC 4 cut(s) 40, 43, 58, 338
BseYI CCCAGC 2 cut(s) 205, 340
BshNI GGYRCC 1 cut(s) 65
BsiSI CCGG 2 cut(s) 63, 92
BslFI GGGAC 2 cut(s) 222, 357
BslI CCNNNNNNNGG 1 cut(s) 361
BsmAI GTCTC 1 cut(s) 180
BsmFI GGGAC 2 cut(s) 222, 357
Bsp143I GATC 2 cut(s) 271, 507
Bsp1720I GCTNAGC 2 cut(s) 201, 235
BspACI CCGC 1 cut(s) 338
BspCNI CTCAG 2 cut(s) 214, 232
BspLI GGNNCC 1 cut(s) 67
BspPI GGATC 1 cut(s) 266
BspQI GCTCTTC 1 cut(s) 246
BspT107I GGYRCC 1 cut(s) 65
BssMI GATC 2 cut(s) 271, 507
Bst4CI ACNGT 2 cut(s) 18, 519
Bst6I CTCTTC 4 cut(s) 105, 150, 246, 299
BstAPI GCANNNNNTGC 1 cut(s) 37
BstDEI CTNAG 3 cut(s) 201, 235, 240
BstH2I RGCGCY 1 cut(s) 235
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 2 cut(s) 274, 510
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 2 cut(s) 271, 507
BstMWI GCNNNNNNNGC 4 cut(s) 37, 46, 221, 389
BstV1I GCAGC 4 cut(s) 40, 43, 58, 338
BstX2I RGATCY 1 cut(s) 271
BstXI CCANNNNNNTGG 1 cut(s) 439
BstYI RGATCY 1 cut(s) 271
BtsIMutI CAGTG 1 cut(s) 263
CfoI GCGC 1 cut(s) 234
DdeI CTNAG 3 cut(s) 201, 235, 240
DpnI GATC 2 cut(s) 273, 509
DpnII GATC 2 cut(s) 271, 507
DraI TTTAAA 1 cut(s) 333
Eam1104I CTCTTC 4 cut(s) 105, 150, 246, 299
EarI CTCTTC 4 cut(s) 105, 150, 246, 299
Eco57I CTGAAG 1 cut(s) 237
FaiI YATR 4 cut(s) 22, 317, 476, 525
FaqI GGGAC 2 cut(s) 222, 357
Fnu4HI GCNGC 5 cut(s) 29, 32, 47, 338, 352
Fsp4HI GCNGC 5 cut(s) 29, 32, 47, 338, 352
GlaI GCGC 1 cut(s) 233
GluI GCNGC 5 cut(s) 29, 32, 47, 338, 352
GsaI CCCAGC 2 cut(s) 209, 344
HaeII RGCGCY 1 cut(s) 235
HapII CCGG 2 cut(s) 63, 92
HhaI GCGC 1 cut(s) 234
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 2 cut(s) 88, 244
HpaI GTTAAC 1 cut(s) 322
HpaII CCGG 2 cut(s) 63, 92
HphI GGTGA 2 cut(s) 193, 517
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 1 cut(s) 303
Hpy188III TCNNGA 3 cut(s) 55, 248, 432
Hpy8I GTNNAC 1 cut(s) 322
HpyAV CCTTC 1 cut(s) 355
HpyCH4III ACNGT 2 cut(s) 18, 519
HpyCH4V TGCA 4 cut(s) 40, 46, 128, 293
HpyF10VI GCNNNNNNNGC 4 cut(s) 37, 46, 221, 389
HpyF3I CTNAG 3 cut(s) 201, 235, 240
HspAI GCGC 1 cut(s) 232
KspAI GTTAAC 1 cut(s) 322
Kzo9I GATC 2 cut(s) 271, 507
LguI GCTCTTC 1 cut(s) 246
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 7 cut(s) 76, 105, 191, 326, 368, 445, 488
Lsp1109I GCAGC 4 cut(s) 40, 43, 58, 338
LweI GCATC 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 77
MalI GATC 2 cut(s) 273, 509
MboI GATC 2 cut(s) 271, 507
MboII GAAGA 9 cut(s) 119, 122, 167, 181, 184, 230, 263, 316, 415
MfeI CAATTG 1 cut(s) 35
MflI RGATCY 1 cut(s) 271
MluCI AATT 4 cut(s) 35, 448, 456, 537
MlyI GAGTC 1 cut(s) 97
MnlI CCTC 6 cut(s) 145, 159, 172, 351, 382, 436
MseI TTAA 4 cut(s) 321, 332, 455, 536
MspA1I CMGCKG 2 cut(s) 205, 340
MspI CCGG 2 cut(s) 63, 92
MunI CAATTG 1 cut(s) 35
MwoI GCNNNNNNNGC 4 cut(s) 37, 46, 221, 389
NdeII GATC 2 cut(s) 271, 507
NlaIV GGNNCC 1 cut(s) 67
PciSI GCTCTTC 1 cut(s) 246
PfeI GAWTC 1 cut(s) 244
PkrI GCNGC 5 cut(s) 30, 33, 48, 339, 353
PleI GAGTC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 96
PspFI CCCAGC 2 cut(s) 205, 340
PspN4I GGNNCC 1 cut(s) 67
PsuI RGATCY 1 cut(s) 271
PvuII CAGCTG 1 cut(s) 205
SapI GCTCTTC 1 cut(s) 246
SaqAI TTAA 4 cut(s) 321, 332, 455, 536
SatI GCNGC 5 cut(s) 29, 32, 47, 338, 352
Sau3AI GATC 2 cut(s) 271, 507
SchI GAGTC 1 cut(s) 97
SfaNI GCATC 1 cut(s) 33
Sse9I AATT 4 cut(s) 35, 448, 456, 537
SsiI CCGC 1 cut(s) 338
SspI AATATT 2 cut(s) 298, 480
TaaI ACNGT 2 cut(s) 18, 519
TasI AATT 4 cut(s) 35, 448, 456, 537
TauI GCSGC 1 cut(s) 340
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 4 cut(s) 321, 332, 455, 536
Tru9I TTAA 4 cut(s) 321, 332, 455, 536
TscAI CASTG 1 cut(s) 270
TseI GCWGC 4 cut(s) 28, 31, 46, 351
TspDTI ATGAA 1 cut(s) 463
TspRI CASTG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.