FvH4_3g31470
TCP Family

TCP family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0010547
Physical Location & Seq
Forward (+)
25708077 .. 25708604
528 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g31470.t1

Sequence Viewer

Length: 528 bp
ATGGGAACAGTGCCAAACTTTTCAACCAAAGCATCCAGTAGTAGCAATCAACTCTTCCATGGTAAAGCTTCAACATCTGTTGGCCATGGAAAGGATGAAGGTGGTGAATGCGGTATACGCTTGCCAAAAAAATGTGTTGCTCGTCTTGTTCAACTCACTGATGAGCTTGGTTTCGATGACAATGGCCAAACAGTAGAGTGGCTCTTAAATACAGTTGAACCATCTATCGTCGCCGCCACGGGCAGAAGTGTGTCCTCCATTAATACGCCTTCAACTCAAGCTCCTGCGCCTTCAACTCAAGCTACTGAGGACATGGAGGAGAATGCGACTGTTAGTCTTGAAGACAAAGATTTGGTGAAGAAGAAGCGCGCTAATGCTGGCCAACCGCTGCCACTTCCGTATGACGATTTTATGAGGTTAGTTACAAACTATGATCTTGAATTTTCTGCCAATGATGTTGCTGTAGACGTTGGCATTCCTGCTCATGAAGAAAACAACAATCAAGATGGACAAGAAAGGCTAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

176

Amino Acids

18.75

Weight (kDa)

4.62

Isoelectric Point (pI)

33.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 39 - 110 4.3e-14 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 115, 465
AccII CGCG 1 cut(s) 369
AciI CCGC 3 cut(s) 111, 234, 386
AcoI YGGCCR 3 cut(s) 82, 184, 379
AcsI RAATTY 1 cut(s) 440
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 8 cut(s) 24, 72, 152, 218, 273, 294, 341, 440
AhdI GACNNNNNGTC 1 cut(s) 333
AluBI AGCT 4 cut(s) 68, 166, 281, 302
AluI AGCT 4 cut(s) 68, 166, 281, 302
AoxI GGCC 3 cut(s) 82, 184, 379
ApeKI GCWGC 1 cut(s) 388
ApoI RAATTY 1 cut(s) 440
AseI ATTAAT 1 cut(s) 261
AspLEI GCGC 3 cut(s) 289, 369, 371
AsuHPI GGTGA 2 cut(s) 116, 367
BalI TGGCCA 3 cut(s) 84, 186, 381
BbsI GAAGAC 1 cut(s) 348
BbvI GCAGC 1 cut(s) 375
BccI CCATC 2 cut(s) 229, 500
BfaI CTAG 1 cut(s) 521
BfmI CTRYAG 1 cut(s) 462
BisI GCNGC 2 cut(s) 234, 389
BlsI GCNGC 2 cut(s) 235, 390
BmeRI GACNNNNNGTC 1 cut(s) 333
BmsI GCATC 1 cut(s) 41
BpiI GAAGAC 1 cut(s) 348
BpuEI CTTGAG 2 cut(s) 261, 282
BsaJI CCNNGG 3 cut(s) 58, 85, 237
BsaXI ACNNNNNCTCC 2 cut(s) 265, 295
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 36
BseDI CCNNGG 3 cut(s) 58, 85, 237
BseGI GGATG 2 cut(s) 32, 100
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 297
BseNI ACTGG 1 cut(s) 36
BsePI GCGCGC 1 cut(s) 367
BseRI GAGGAG 1 cut(s) 332
BseXI GCAGC 1 cut(s) 375
Bsh1236I CGCG 1 cut(s) 369
BshFI GGCC 3 cut(s) 84, 186, 381
BslI CCNNNNNNNGG 1 cut(s) 91
BsmI GAATGC 3 cut(s) 113, 328, 474
BsnI GGCC 3 cut(s) 84, 186, 381
Bsp143I GATC 1 cut(s) 433
Bsp19I CCATGG 2 cut(s) 58, 85
BspACI CCGC 3 cut(s) 111, 234, 386
BspANI GGCC 3 cut(s) 84, 186, 381
BspCNI CTCAG 1 cut(s) 298
BspFNI CGCG 1 cut(s) 369
BspHI TCATGA 1 cut(s) 484
BsrI ACTGG 1 cut(s) 36
BssECI CCNNGG 3 cut(s) 58, 85, 237
BssHII GCGCGC 1 cut(s) 367
BssMI GATC 1 cut(s) 433
BssNAI GTATAC 1 cut(s) 116
BssT1I CCWWGG 2 cut(s) 58, 85
Bst1107I GTATAC 1 cut(s) 116
Bst4CI ACNGT 4 cut(s) 10, 193, 214, 331
Bst6I CTCTTC 1 cut(s) 59
BstC8I GCNNGC 3 cut(s) 122, 369, 379
BstDEI CTNAG 1 cut(s) 306
BstDSI CCRYGG 3 cut(s) 58, 85, 237
BstF5I GGATG 2 cut(s) 32, 100
BstFNI CGCG 1 cut(s) 369
BstHHI GCGC 3 cut(s) 289, 369, 371
BstKTI GATC 1 cut(s) 436
BstMBI GATC 1 cut(s) 433
BstMWI GCNNNNNNNGC 1 cut(s) 117
BstSFI CTRYAG 1 cut(s) 462
BstUI CGCG 1 cut(s) 369
BstV1I GCAGC 1 cut(s) 375
BstV2I GAAGAC 1 cut(s) 348
BstZ17I GTATAC 1 cut(s) 116
BsuRI GGCC 3 cut(s) 84, 186, 381
BtgI CCRYGG 3 cut(s) 58, 85, 237
BtsCI GGATG 2 cut(s) 32, 100
BtsIMutI CAGTG 2 cut(s) 15, 156
Cac8I GCNNGC 3 cut(s) 122, 369, 379
CciI TCATGA 1 cut(s) 484
CfoI GCGC 3 cut(s) 289, 369, 371
CviAII CATG 4 cut(s) 59, 86, 313, 485
CviJI RGCY 9 cut(s) 68, 84, 166, 186, 202, 281, 302, 381, 520
CviKI_1 RGCY 9 cut(s) 68, 84, 166, 186, 202, 281, 302, 381, 520
DdeI CTNAG 1 cut(s) 306
DpnI GATC 1 cut(s) 435
DpnII GATC 1 cut(s) 433
DriI GACNNNNNGTC 1 cut(s) 333
EaeI YGGCCR 3 cut(s) 82, 184, 379
Eam1104I CTCTTC 1 cut(s) 59
Eam1105I GACNNNNNGTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 59
Eco130I CCWWGG 2 cut(s) 58, 85
EcoT14I CCWWGG 2 cut(s) 58, 85
ErhI CCWWGG 2 cut(s) 58, 85
FaeI CATG 4 cut(s) 62, 89, 316, 488
FaiI YATR 8 cut(s) 60, 87, 116, 314, 402, 413, 432, 486
FatI CATG 4 cut(s) 58, 85, 312, 484
FblI GTMKAC 2 cut(s) 115, 465
Fnu4HI GCNGC 2 cut(s) 234, 389
FokI GGATG 2 cut(s) 19, 107
Fsp4HI GCNGC 2 cut(s) 234, 389
FspBI CTAG 1 cut(s) 521
GlaI GCGC 3 cut(s) 288, 368, 370
GluI GCNGC 2 cut(s) 234, 389
HaeIII GGCC 3 cut(s) 84, 186, 381
HhaI GCGC 3 cut(s) 289, 369, 371
Hin1II CATG 4 cut(s) 62, 89, 316, 488
Hin6I GCGC 3 cut(s) 287, 367, 369
HinP1I GCGC 3 cut(s) 287, 367, 369
HindIII AAGCTT 1 cut(s) 66
HphI GGTGA 2 cut(s) 116, 367
Hpy166II GTNNAC 2 cut(s) 116, 466
Hpy188III TCNNGA 4 cut(s) 338, 437, 485, 503
Hpy8I GTNNAC 2 cut(s) 116, 466
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 3 cut(s) 92, 279, 300
HpyCH4III ACNGT 4 cut(s) 10, 193, 214, 331
HpyCH4IV ACGT 1 cut(s) 468
HpyF10VI GCNNNNNNNGC 1 cut(s) 117
HpyF3I CTNAG 1 cut(s) 306
HpySE526I ACGT 1 cut(s) 468
Hsp92II CATG 4 cut(s) 62, 89, 316, 488
HspAI GCGC 3 cut(s) 287, 367, 369
Kzo9I GATC 1 cut(s) 433
LmnI GCTCC 1 cut(s) 286
LpnPI CCDG 4 cut(s) 49, 297, 363, 492
Lsp1109I GCAGC 1 cut(s) 375
LweI GCATC 1 cut(s) 41
MaeI CTAG 1 cut(s) 521
MaeII ACGT 1 cut(s) 468
MaeIII GTNAC 1 cut(s) 421
MalI GATC 1 cut(s) 435
MboI GATC 1 cut(s) 433
MboII GAAGA 5 cut(s) 46, 353, 370, 373, 500
MlsI TGGCCA 3 cut(s) 84, 186, 381
MluCI AATT 1 cut(s) 440
MluNI TGGCCA 3 cut(s) 84, 186, 381
MnlI CCTC 4 cut(s) 265, 301, 310, 408
Mox20I TGGCCA 3 cut(s) 84, 186, 381
MscI TGGCCA 3 cut(s) 84, 186, 381
MseI TTAA 2 cut(s) 206, 261
Msp20I TGGCCA 3 cut(s) 84, 186, 381
MspA1I CMGCKG 1 cut(s) 388
Mva1269I GAATGC 3 cut(s) 113, 328, 474
MvnI CGCG 1 cut(s) 369
MwoI GCNNNNNNNGC 1 cut(s) 117
NcoI CCATGG 2 cut(s) 58, 85
NdeII GATC 1 cut(s) 433
NlaIII CATG 4 cut(s) 62, 89, 316, 488
PagI TCATGA 1 cut(s) 484
PauI GCGCGC 1 cut(s) 367
PctI GAATGC 3 cut(s) 113, 328, 474
PkrI GCNGC 2 cut(s) 235, 390
PshBI ATTAAT 1 cut(s) 261
PteI GCGCGC 1 cut(s) 367
SaqAI TTAA 2 cut(s) 206, 261
SatI GCNGC 2 cut(s) 234, 389
Sau3AI GATC 1 cut(s) 433
SetI ASST 7 cut(s) 70, 103, 168, 283, 304, 419, 471
SfaNI GCATC 1 cut(s) 41
SfcI CTRYAG 1 cut(s) 462
SmlI CTYRAG 2 cut(s) 276, 297
SmoI CTYRAG 2 cut(s) 276, 297
Sse9I AATT 1 cut(s) 440
SsiI CCGC 3 cut(s) 111, 234, 386
SspMI CTAG 1 cut(s) 521
StyI CCWWGG 2 cut(s) 58, 85
TaaI ACNGT 4 cut(s) 10, 193, 214, 331
TaiI ACGT 1 cut(s) 471
TaqI TCGA 1 cut(s) 174
TasI AATT 1 cut(s) 440
TauI GCSGC 1 cut(s) 236
Tru1I TTAA 2 cut(s) 206, 261
Tru9I TTAA 2 cut(s) 206, 261
TscAI CASTG 2 cut(s) 15, 163
TseI GCWGC 1 cut(s) 388
TspDTI ATGAA 2 cut(s) 111, 501
TspGWI ACGGA 1 cut(s) 387
TspRI CASTG 2 cut(s) 15, 163
VspI ATTAAT 1 cut(s) 261
XapI RAATTY 1 cut(s) 440
XmiI GTMKAC 2 cut(s) 115, 465
XspI CTAG 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.