Rh5CG415100
TCP Family

TCP family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0010547
Physical Location & Seq
Forward (+)
56337786 .. 56338295
510 bp
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UTR
Exon/CDS
Intron
Rh5CG415100.1

Sequence Viewer

Length: 510 bp
ATGGGAATAGAATCAAACTTTTCAACCAATGCCTCAAGCAGTAGAAATCAAGTCCTCCATGGCAAAGCTTTAACAACAGATGGCCACACAAAGGTTGAAGGTGGTGAATGCTGTATTATCTTGCCGAAGTCATGTGTTGCTTGTATCGCTCAACTCACTCGTGATCTTGGTCACAATACCAATGGTCAAACAATAGAGTGGCTCTTACAACAAGCTGAACCATTTATTATCGCTGCCACTGCGAAACATGTCTCCCCGATTAATACGCCTTCAACTCTAGTTGCTGTGGATTTGGAGGAGAATGCTGTTAGTCTTGAAGACAAAGATTTGGTTAAGAAGAAGCGCACTATAGGTGACCAACCGATGCTACCTGCTTATGACTATTATTTGAGGTTGGTTACACAAAACTATGAAATTGCTGACTTTTCTGCCAATGATGTTGTAATAGATGTAGGGATCCAAACTCAGGAAGAAACCCAGAATCAGGATGGGGAAGAAAGATTAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

169

Amino Acids

18.56

Weight (kDa)

4.65

Isoelectric Point (pI)

43.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 25 - 106 5.4e-11 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 379
AclWI GGATC 2 cut(s) 451, 464
AcoI YGGCCR 1 cut(s) 82
AfiI CCNNNNNNNGG 3 cut(s) 91, 466, 484
AflIII ACRYGT 1 cut(s) 247
AgsI TTSAA 4 cut(s) 24, 98, 273, 317
AluBI AGCT 2 cut(s) 68, 215
AluI AGCT 2 cut(s) 68, 215
Alw26I GTCTC 1 cut(s) 256
AlwI GGATC 2 cut(s) 451, 464
AoxI GGCC 1 cut(s) 82
ApeKI GCWGC 1 cut(s) 233
AseI ATTAAT 1 cut(s) 261
AspLEI GCGC 1 cut(s) 345
AsuHPI GGTGA 2 cut(s) 116, 365
BalI TGGCCA 1 cut(s) 84
BamHI GGATCC 1 cut(s) 456
BauI CACGAG 1 cut(s) 159
BbsI GAAGAC 1 cut(s) 324
BbvI GCAGC 1 cut(s) 220
BccI CCATC 2 cut(s) 74, 482
BcoDI GTCTC 1 cut(s) 256
BfaI CTAG 1 cut(s) 278
BfmI CTRYAG 1 cut(s) 348
BfuAI ACCTGC 1 cut(s) 379
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
BmiI GGNNCC 1 cut(s) 458
BmsI GCATC 1 cut(s) 354
BpiI GAAGAC 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 19
BsaJI CCNNGG 1 cut(s) 58
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 466, 484
BseDI CCNNGG 1 cut(s) 58
BseGI GGATG 1 cut(s) 493
BseLI CCNNNNNNNGG 3 cut(s) 91, 466, 484
BseMII CTCAG 1 cut(s) 479
BseRI GAGGAG 1 cut(s) 311
BseXI GCAGC 1 cut(s) 220
BshFI GGCC 1 cut(s) 84
BslI CCNNNNNNNGG 3 cut(s) 91, 466, 484
BsmAI GTCTC 1 cut(s) 256
BsmI GAATGC 2 cut(s) 113, 307
BsnI GGCC 1 cut(s) 84
Bsp143I GATC 2 cut(s) 163, 456
Bsp19I CCATGG 1 cut(s) 58
BspANI GGCC 1 cut(s) 84
BspCNI CTCAG 1 cut(s) 478
BspLI GGNNCC 1 cut(s) 458
BspMI ACCTGC 1 cut(s) 379
BspPI GGATC 2 cut(s) 451, 464
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 2 cut(s) 163, 456
BssSI CACGAG 1 cut(s) 159
BssT1I CCWWGG 1 cut(s) 58
Bst2BI CACGAG 1 cut(s) 159
BstDEI CTNAG 1 cut(s) 465
BstDSI CCRYGG 1 cut(s) 58
BstEII GGTNACC 1 cut(s) 353
BstF5I GGATG 1 cut(s) 493
BstHHI GCGC 1 cut(s) 345
BstKTI GATC 2 cut(s) 166, 459
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 2 cut(s) 163, 456
BstMWI GCNNNNNNNGC 2 cut(s) 146, 239
BstNSI RCATGY 1 cut(s) 251
BstPI GGTNACC 1 cut(s) 353
BstSFI CTRYAG 1 cut(s) 348
BstV1I GCAGC 1 cut(s) 220
BstV2I GAAGAC 1 cut(s) 324
BstX2I RGATCY 1 cut(s) 456
BstYI RGATCY 1 cut(s) 456
BsuRI GGCC 1 cut(s) 84
BtgI CCRYGG 1 cut(s) 58
BtsCI GGATG 1 cut(s) 493
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 1 cut(s) 237
BveI ACCTGC 1 cut(s) 379
CfoI GCGC 1 cut(s) 345
CviAII CATG 3 cut(s) 59, 132, 248
CviJI RGCY 4 cut(s) 68, 84, 202, 215
CviKI_1 RGCY 4 cut(s) 68, 84, 202, 215
DdeI CTNAG 1 cut(s) 465
DpnI GATC 2 cut(s) 165, 458
DpnII GATC 2 cut(s) 163, 456
EaeI YGGCCR 1 cut(s) 82
Eco130I CCWWGG 1 cut(s) 58
Eco91I GGTNACC 1 cut(s) 353
EcoO65I GGTNACC 1 cut(s) 353
EcoT14I CCWWGG 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 3 cut(s) 62, 135, 251
FaiI YATR 6 cut(s) 60, 133, 249, 350, 378, 411
FatI CATG 3 cut(s) 58, 131, 247
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 1 cut(s) 500
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 1 cut(s) 278
GlaI GCGC 1 cut(s) 344
GluI GCNGC 1 cut(s) 234
HaeIII GGCC 1 cut(s) 84
HhaI GCGC 1 cut(s) 345
Hin1II CATG 3 cut(s) 62, 135, 251
Hin6I GCGC 1 cut(s) 343
HinP1I GCGC 1 cut(s) 343
HindIII AAGCTT 1 cut(s) 66
HinfI GANTC 2 cut(s) 11, 481
HphI GGTGA 2 cut(s) 116, 365
Hpy188III TCNNGA 4 cut(s) 161, 314, 467, 485
HpyAV CCTTC 2 cut(s) 92, 279
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 239
HpyF3I CTNAG 1 cut(s) 465
Hsp92II CATG 3 cut(s) 62, 135, 251
HspAI GCGC 1 cut(s) 343
Kzo9I GATC 2 cut(s) 163, 456
LpnPI CCDG 4 cut(s) 384, 452, 470, 491
Lsp1109I GCAGC 1 cut(s) 220
LweI GCATC 1 cut(s) 354
MaeI CTAG 1 cut(s) 278
MaeIII GTNAC 3 cut(s) 170, 353, 397
MalI GATC 2 cut(s) 165, 458
MboI GATC 2 cut(s) 163, 456
MboII GAAGA 4 cut(s) 329, 349, 482, 506
MflI RGATCY 1 cut(s) 456
MlsI TGGCCA 1 cut(s) 84
MluCI AATT 1 cut(s) 414
MluNI TGGCCA 1 cut(s) 84
MnlI CCTC 4 cut(s) 43, 65, 289, 384
Mox20I TGGCCA 1 cut(s) 84
MscI TGGCCA 1 cut(s) 84
MseI TTAA 3 cut(s) 71, 261, 333
Msp20I TGGCCA 1 cut(s) 84
Mva1269I GAATGC 2 cut(s) 113, 307
MwoI GCNNNNNNNGC 2 cut(s) 146, 239
NcoI CCATGG 1 cut(s) 58
NdeII GATC 2 cut(s) 163, 456
NlaIII CATG 3 cut(s) 62, 135, 251
NlaIV GGNNCC 1 cut(s) 458
NmuCI GTSAC 2 cut(s) 170, 353
NspI RCATGY 1 cut(s) 251
PciI ACATGT 1 cut(s) 247
PctI GAATGC 2 cut(s) 113, 307
PfeI GAWTC 2 cut(s) 11, 481
PkrI GCNGC 1 cut(s) 235
PscI ACATGT 1 cut(s) 247
PshBI ATTAAT 1 cut(s) 261
PspEI GGTNACC 1 cut(s) 353
PspN4I GGNNCC 1 cut(s) 458
PsuI RGATCY 1 cut(s) 456
SaqAI TTAA 3 cut(s) 71, 261, 333
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 2 cut(s) 163, 456
SetI ASST 7 cut(s) 70, 96, 103, 217, 355, 373, 395
SfaNI GCATC 1 cut(s) 354
SfcI CTRYAG 1 cut(s) 348
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
Sse9I AATT 1 cut(s) 414
SspMI CTAG 1 cut(s) 278
StyI CCWWGG 1 cut(s) 58
TasI AATT 1 cut(s) 414
TfiI GAWTC 2 cut(s) 11, 481
Tru1I TTAA 3 cut(s) 71, 261, 333
Tru9I TTAA 3 cut(s) 71, 261, 333
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 2 cut(s) 170, 353
TseI GCWGC 1 cut(s) 233
Tsp45I GTSAC 2 cut(s) 170, 353
TspDTI ATGAA 1 cut(s) 426
TspRI CASTG 1 cut(s) 244
VspI ATTAAT 1 cut(s) 261
XceI RCATGY 1 cut(s) 251
XcmI CCANNNNNNNNNTGG 1 cut(s) 485
XspI CTAG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.