Rmu_sc0000367.1_g000033
TCP Family

TCP family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000367.1
OG0010547
Physical Location & Seq
Forward (+)
136420 .. 136764
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000367.1_g000033.1.cds

Sequence Viewer

Length: 345 bp
atgaaaaattttctgagtgttaccgatggccagacgatagagtggctcctaaaacaagctgaaccatctattctcgctgtcacaggtaacggtgtcactcccagtaacactctttcgactctagcttctgtgaatttgcaggtagaaaaagtcgttagtgaagacaaaaattttgtgagaaagaagtgcactacgggtggccaaccgttgccaccaccctatgaccattacctgaagatcattacaaaaaactatggtatcgaattttctgtcaatgacgtcgcaatagatgtggggatcgaaactcaggaagagttcaaggagaaagatggaaaacaagattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

114

Amino Acids

12.6

Weight (kDa)

4.97

Isoelectric Point (pI)

42.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 282
Acc36I ACCTGC 1 cut(s) 130
AclWI GGATC 1 cut(s) 305
AcoI YGGCCR 2 cut(s) 28, 199
AcsI RAATTY 4 cut(s) 7, 133, 169, 263
AcuI CTGAAG 1 cut(s) 254
AcyI GRCGYC 1 cut(s) 279
AgsI TTSAA 1 cut(s) 319
AluBI AGCT 2 cut(s) 59, 125
AluI AGCT 2 cut(s) 59, 125
Alw21I GWGCWC 1 cut(s) 191
Alw44I GTGCAC 1 cut(s) 187
AlwI GGATC 1 cut(s) 305
AoxI GGCC 2 cut(s) 28, 199
ApaLI GTGCAC 1 cut(s) 187
ApoI RAATTY 4 cut(s) 7, 133, 169, 263
ArsI GACNNNNNNTTYG 4 cut(s) 155, 187, 255, 287
BaeGI GKGCMC 1 cut(s) 191
BaeI ACNNNNGTAYC 2 cut(s) 241, 274
BalI TGGCCA 2 cut(s) 30, 201
BbsI GAAGAC 1 cut(s) 168
Bbv12I GWGCWC 1 cut(s) 191
BccI CCATC 3 cut(s) 20, 73, 323
BfaI CTAG 1 cut(s) 122
BfuAI ACCTGC 1 cut(s) 130
BmiI GGNNCC 1 cut(s) 47
BmrI ACTGGG 1 cut(s) 96
BmuI ACTGGG 1 cut(s) 96
BpiI GAAGAC 1 cut(s) 168
BsaHI GRCGYC 1 cut(s) 279
Bse1I ACTGG 1 cut(s) 102
BseMII CTCAG 2 cut(s) 5, 320
BseNI ACTGG 1 cut(s) 102
BseSI GKGCMC 1 cut(s) 191
BshFI GGCC 2 cut(s) 30, 201
BsiHKAI GWGCWC 1 cut(s) 191
BsnI GGCC 2 cut(s) 30, 201
Bsp1286I GDGCHC 1 cut(s) 191
Bsp143I GATC 2 cut(s) 237, 297
BspANI GGCC 2 cut(s) 30, 201
BspCNI CTCAG 2 cut(s) 6, 319
BspLI GGNNCC 1 cut(s) 47
BspMI ACCTGC 1 cut(s) 130
BspPI GGATC 1 cut(s) 305
BsrI ACTGG 1 cut(s) 102
BssMI GATC 2 cut(s) 237, 297
BssNI GRCGYC 1 cut(s) 279
Bst4CI ACNGT 2 cut(s) 92, 207
Bst6I CTCTTC 1 cut(s) 306
BstACI GRCGYC 1 cut(s) 279
BstDEI CTNAG 2 cut(s) 14, 306
BstKTI GATC 2 cut(s) 240, 300
BstMBI GATC 2 cut(s) 237, 297
BstSLI GKGCMC 1 cut(s) 191
BstV2I GAAGAC 1 cut(s) 168
BsuRI GGCC 2 cut(s) 30, 201
BveI ACCTGC 1 cut(s) 130
CspCI CAANNNNNGTGG 2 cut(s) 273, 308
CviJI RGCY 5 cut(s) 30, 46, 59, 125, 201
CviKI_1 RGCY 5 cut(s) 30, 46, 59, 125, 201
DdeI CTNAG 2 cut(s) 14, 306
DpnI GATC 2 cut(s) 239, 299
DpnII GATC 2 cut(s) 237, 297
EaeI YGGCCR 2 cut(s) 28, 199
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Eco57I CTGAAG 1 cut(s) 254
FaiI YATR 2 cut(s) 222, 255
FspBI CTAG 1 cut(s) 122
HaeIII GGCC 2 cut(s) 30, 201
Hin1I GRCGYC 1 cut(s) 279
HinfI GANTC 1 cut(s) 118
Hpy166II GTNNAC 1 cut(s) 189
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 1 cut(s) 308
Hpy8I GTNNAC 1 cut(s) 189
Hpy99I CGWCG 1 cut(s) 284
HpyCH4III ACNGT 2 cut(s) 92, 207
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 2 cut(s) 139, 189
HpyF3I CTNAG 2 cut(s) 14, 306
HpySE526I ACGT 1 cut(s) 279
Hsp92I GRCGYC 1 cut(s) 279
Kzo9I GATC 2 cut(s) 237, 297
LmnI GCTCC 1 cut(s) 51
LpnPI CCDG 6 cut(s) 44, 69, 115, 125, 245, 293
MaeI CTAG 1 cut(s) 122
MaeII ACGT 1 cut(s) 279
MaeIII GTNAC 5 cut(s) 19, 79, 86, 94, 104
MalI GATC 2 cut(s) 239, 299
MboI GATC 2 cut(s) 237, 297
MboII GAAGA 3 cut(s) 173, 247, 323
MhlI GDGCHC 1 cut(s) 191
MlsI TGGCCA 2 cut(s) 30, 201
MluCI AATT 4 cut(s) 7, 133, 169, 263
MluNI TGGCCA 2 cut(s) 30, 201
MlyI GAGTC 1 cut(s) 112
Mox20I TGGCCA 2 cut(s) 30, 201
MscI TGGCCA 2 cut(s) 30, 201
Msp20I TGGCCA 2 cut(s) 30, 201
NdeII GATC 2 cut(s) 237, 297
NlaIV GGNNCC 1 cut(s) 47
NmuCI GTSAC 2 cut(s) 79, 94
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 47
Sau3AI GATC 2 cut(s) 237, 297
SchI GAGTC 1 cut(s) 112
SduI GDGCHC 1 cut(s) 191
SetI ASST 6 cut(s) 61, 88, 127, 144, 234, 282
Sse9I AATT 4 cut(s) 7, 133, 169, 263
SspMI CTAG 1 cut(s) 122
TaaI ACNGT 2 cut(s) 92, 207
TaiI ACGT 1 cut(s) 282
TaqI TCGA 3 cut(s) 116, 261, 300
TasI AATT 4 cut(s) 7, 133, 169, 263
TseFI GTSAC 2 cut(s) 79, 94
Tsp45I GTSAC 2 cut(s) 79, 94
TspDTI ATGAA 1 cut(s) 17
VneI GTGCAC 1 cut(s) 187
XapI RAATTY 4 cut(s) 7, 133, 169, 263
XspI CTAG 1 cut(s) 122
ZraI GACGTC 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.