Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010547

Physical Location & Seq

Genomic Coordinates Reverse (-)

36879718 .. 36884746

Gene Structure 5029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0312200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2433 bp

ATGAAGGTTCATGAAACGAGGTCACACTCTCATTCAAACCCTGAAGAGGAGAAGAAAGTAATGACGCGGAAGCAGAAGGCTGAGAACAAGGCACATGATGGAGAGCAACCTCCAAAGAAGCCTAAGGCTGATGATCACAATGGCCATGCAAATGGTAAAGCTTTACCTGCTGAGTTTGAGGAACTGTATTCTGCTGTCAAAGAGCATTTGTCAACTGAACAAATGAGAGAAATCTTGGAAGCTAATGATCAAGACTCTTCTGGCTCAGATGCTGCTGTTCTCAGAAAATGCCAAGATCTGCTATTCTATGGGCCATTAGATAGTTGTCGTATTTGCAATGGTAAATTAGAGTTCAATGGTATACGCTATTCTTGCACCGGAACTTATAGCGAGTGGGCTTCTTGTACTTTCAACACGAGGGATCCACCAAGGAAGCAGGAAGCGATCAAGTTACCTGAGAGTCTTGAGAAGTCTCCTGCTTCAGATTTGCTAAAGAAATATCAGGACCCAAGTCGCCGGCCCAAGAGGGATTTAAGCACCCCTGATAAGCCCTTCACTGGGATGTTAATTTCTCTAATGGGCCGTCTTACTAGATCACATCAATACTGGAGACAGGAAGTAGATAAACATGGAGGAAAGGTTGCCAACCATGTGATTGGTGTGACATGCCTAATTGTGTCTCCTGCGGAACGAGAACGAGGTGGCACAAATAAACTGGCTGAAGCAATGGAGAGAGGGATACCTGTAGTAAGTGAACAGTGGCTGATTGATAGCATAGAAAAACAAGAACCCCAGCCTCTCGAAGCATATGAAATTGCTAGTGATCTTGCTCCTGATGGCAGAGGAATCCCATGGGACAAAATGGATCCCAGTGAAGAGGCAATTGAGTCACTTTCAGCAGAACTCAAGCTTTATGGGAAGAGAGCTGTCTACAAAGATACAAAACTGCAGGAGCAAGGCGGAAAAATCTTCGAGAGGGATGGGATATTGTACAACTGTGCCTTCTCACGTTGTGATCTAGGACGAAAACTGAACGATTATTCCATCTTGCAACTGATTATGGTGCCAGAGAACAGCCTGAACTTGTACTACAAGAAAGGCAGAGTTGGGGATGACCCCAATGCGGAGGAAAGGCTTGAAGAATGGAAGAATGTGGATGATGCTGTGAAAGAGTTTGTTAGAATATTTGAGGAAGTAACCGGAAACGAGTTTGAACCATGGGAAAGAGAGAAGAAGATCCAGAAGAAGCCATTTAAGTTTTACCCAATAGACATGGACGATGGAGTTGAAGTAAGACATGGAGGACTTGGTCTTCGACAGCTGGGAGTTGCTGCTACACATTGCAAACTTCAGCCCGAGGTTGCGAATTTTATGAAGGTCTTATGCAGTCAGGAGATTTACAAATATGCTCTGATGGAGATGGGATTGGATGCCCCAGACTTGCCAATGGGGATGCTTACCGATGTCCACCTAAAAAAATGTGAGGATGTTCTTCAAGAGTTTGTGGAGAAACTGAAGTCAATGAAGGAATCAGGGCCAGAGTCTGAGGCTGTTTGGTCGGACTTTAGCCAAAGATGGTTTACCCTGCTGCACTCTACTAGGCCTTTCATATTCAGGAACTTCCAGGAAGTTGCAGATCATGCTGCTGCTGCACTGGAGACTGTTCGGGACATAACTCTGTCCTCACATCTTATTGGAGACATGAGTGGAGCTACCATTGATGATCCCTTGTCCGATAGATGTAGCAAATTGGGATGCTCAATCTCCCCACTTGATAAGGAATCTGATGATTACAAAATGATTCTGAAGTACCTGGACAAGACTTATGAACCTGTCAAAGTTGGAGATATTGAATACGGGGTGTCTGTGGAGAACATATTCGTTGTTGAATCAAATGCCTGTCCATCTTTGGATGAAATAAAGAAGTTGCCTAACAAATTTCTCCTATGGTGTGGGACACGGAGCTCAAATCTGATGAGGCACTTGAATAAGGGTTTCTTGCCAGCAATATGCTCTCTCCCTGTCCCAGGCTATATGTTTGGGAAAGCAATTGTTTGCTCTGATACTGCCGCAGAGGCTGCAAGTTATGGTTATACTGCTGTGGACAGACCAGAGGGTTTCTTAGTTTTGGCTGTGGCTTCTCTAGGTGATGAGATTATTGAGTTGAAAAACCCACCAGAGGACACAAAATATTTAGAGGACAAGAAAGTTGGAGTGAAGGGCATAGGGAAAAAGAAGACTGATGAATCGGAGCACTTTGTATGGCATGATGATATCAAAGTTCCTTGTGGACGATTAGTGCCTTCAGATAATAAAGACAGCATTGTCGAGTATAACGAGTATGCTGTCTATGATCCCAAGCAGACATGCATAAGGTTCTTGGTGGGTGTGAAGTATGAAGAGAAGGATGCTGTCATGGACACCGAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043433 GO:0044092 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

TCP

Protein Analysis

810

Amino Acids

91.56

Weight (kDa)

5.32

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PADR1_N	PF21728	58 - 104	5.9e-13	PADR1, N-terminal helical domain
Zn_ribbon_PADR1	PF08063	106 - 145	7.9e-14	PADR1 domain, zinc ribbon fold
BRCT	PF00533	181 - 259	1.9e-07	BRCA1 C Terminus (BRCT) domain
BRCT_2	PF16589	185 - 271	1.5e-06	BRCT domain
WGR	PF05406	331 - 409	3.3e-07	WGR domain
PARP_reg	PF02877	448 - 579	7e-24	Poly(ADP-ribose) polymerase, regulatory domain
PARP	PF00644	595 - 798	8.1e-52	Poly(ADP-ribose) polymerase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g31470 FvH4_3g31480
rosa_laevigata	RLG00000035198 RLG00000035199
rosa_multiflora	Rmu_sc0000367.1_g000023 Rmu_sc0000367.1_g000029 Rmu_sc0000367.1_g000031 Rmu_sc0000367.1_g000032 Rmu_sc0000367.1_g000033
rosa_roxburghii	Rroxscaffold_1G00022400 Rroxscaffold_1G00022420
rosa_rugosa	Rorug05G0312200
rosa_samantha	Rh5AG380200 Rh5BG391200 Rh5BG391300 Rh5CG415100 Rh5CG415200 Rh5DG405900 Rh5DG406000
rosa_wichuraiana	Rw5G035780 Rw5G035790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2324
Acc36I	ACCTGC	1 cut(s)	175
AccB1I	GGYRCC	1 cut(s)	1063
AccI	GTMKAC	2 cut(s)	361, 930
AccII	CGCG	1 cut(s)	67
AciI	CCGC	5 cut(s)	67, 686, 960, 1124, 2070
AclWI	GGATC	7 cut(s)	416, 429, 860, 873, 1231, 1718, 2348
AcoI	YGGCCR	1 cut(s)	142
AcsI	RAATTY	2 cut(s)	1366, 1937
AcuI	CTGAAG	7 cut(s)	63, 465, 741, 1334, 1535, 1826, 2289
AdeI	CACNNNGTG	1 cut(s)	1013
AfaI	GTAC	4 cut(s)	406, 992, 1088, 1811
AfiI	CCNNNNNNNGG	6 cut(s)	46, 557, 558, 1123, 2027, 2179
AjnI	CCWGG	3 cut(s)	1623, 1812, 2026
AloI	GAACNNNNNNTCC	2 cut(s)	1025, 1057
AluBI	AGCT	7 cut(s)	161, 242, 910, 926, 1321, 1712, 1965
AluI	AGCT	7 cut(s)	161, 242, 910, 926, 1321, 1712, 1965
Alw21I	GWGCWC	2 cut(s)	1967, 2256
Alw26I	GTCTC	5 cut(s)	477, 604, 684, 1652, 1692
AlwI	GGATC	7 cut(s)	416, 429, 860, 873, 1231, 1718, 2348
AlwNI	CAGNNNCTG	4 cut(s)	272, 763, 1544, 2078
Ama87I	CYCGRG	1 cut(s)	1355
AoxI	GGCC	6 cut(s)	142, 311, 518, 580, 1535, 1601
ApeKI	GCWGC	7 cut(s)	272, 1331, 1588, 1643, 1646, 1649, 2078
ApoI	RAATTY	2 cut(s)	1366, 1937
ArsI	GACNNNNNNTTYG	2 cut(s)	1296, 1328
Asp700I	GAANNNNTTC	1 cut(s)	1877
AspS9I	GGNCC	5 cut(s)	311, 505, 519, 580, 1535
AsuHPI	GGTGA	1 cut(s)	2159
AvaI	CYCGRG	1 cut(s)	1355
AvaII	GGWCC	1 cut(s)	505
AxyI	CCTNAGG	1 cut(s)	123
BalI	TGGCCA	1 cut(s)	144
BamHI	GGATCC	2 cut(s)	421, 865
BanI	GGYRCC	1 cut(s)	1063
BanII	GRGCYC	1 cut(s)	1967
BauI	CACGAG	1 cut(s)	415
BbsI	GAAGAC	2 cut(s)	1304, 2243
Bbv12I	GWGCWC	2 cut(s)	1967, 2256
BbvI	GCAGC	7 cut(s)	259, 1318, 1575, 1630, 1633, 1636, 2065
BccI	CCATC	9 cut(s)	92, 830, 974, 1052, 1274, 1408, 1414, 1569, 1912
BceAI	ACGGC	1 cut(s)	567
BciT130I	CCWGG	3 cut(s)	1625, 1814, 2028
BciVI	GTATCC	1 cut(s)	732
BclI	TGATCA	2 cut(s)	133, 247
BcoDI	GTCTC	5 cut(s)	477, 604, 684, 1652, 1692
BfaI	CTAG	5 cut(s)	591, 819, 1019, 1599, 2144
BfmI	CTRYAG	2 cut(s)	744, 947
BfuAI	ACCTGC	1 cut(s)	175
BfuI	GTATCC	1 cut(s)	732
BglI	GCCNNNNNGGC	1 cut(s)	2075
BglII	AGATCT	1 cut(s)	295
BisI	GCNGC	8 cut(s)	273, 1332, 1589, 1644, 1647, 1650, 2070, 2079
BlsI	GCNGC	8 cut(s)	274, 1333, 1590, 1645, 1648, 1651, 2071, 2080
Bme1390I	CCNGG	3 cut(s)	1625, 1814, 2028
Bme18I	GGWCC	1 cut(s)	505
BmeT110I	CYCGRG	1 cut(s)	1355
BmgT120I	GGNCC	5 cut(s)	311, 505, 519, 580, 1535
BmiI	GGNNCC	4 cut(s)	423, 507, 867, 1065
BmrFI	CCNGG	3 cut(s)	1625, 1814, 2028
BmrI	ACTGGG	2 cut(s)	567, 864
BmsI	GCATC	6 cut(s)	259, 1150, 1420, 1443, 1745, 2398
BmuI	ACTGGG	2 cut(s)	567, 864
BoxI	GACNNNNGTC	1 cut(s)	510
BpiI	GAAGAC	2 cut(s)	1304, 2243
BpmI	CTGGAG	2 cut(s)	628, 1676
BpuEI	CTTGAG	2 cut(s)	485, 890
BsaJI	CCNNGG	6 cut(s)	428, 851, 1217, 1356, 2026, 2424
BsaWI	WCCGGW	2 cut(s)	377, 1199
BsaXI	ACNNNNNCTCC	4 cut(s)	624, 654, 1275, 1305
Bsc4I	CCNNNNNNNGG	6 cut(s)	46, 557, 558, 1123, 2027, 2179
Bse118I	RCCGGY	1 cut(s)	516
Bse1I	ACTGG	5 cut(s)	562, 611, 720, 870, 1659
Bse21I	CCTNAGG	1 cut(s)	123
Bse3DI	GCAATG	3 cut(s)	343, 732, 1339
BseBI	CCWGG	3 cut(s)	1625, 1814, 2028
BseDI	CCNNGG	6 cut(s)	428, 851, 1217, 1356, 2026, 2424
BseLI	CCNNNNNNNGG	6 cut(s)	46, 557, 558, 1123, 2027, 2179
BseMI	GCAATG	3 cut(s)	343, 732, 1339
BseMII	CTCAG	6 cut(s)	72, 162, 279, 295, 447, 1536
BseNI	ACTGG	5 cut(s)	562, 611, 720, 870, 1659
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	7 cut(s)	259, 1318, 1575, 1630, 1633, 1636, 2065
BseYI	CCCAGC	2 cut(s)	792, 1321
BsgI	GTGCAG	2 cut(s)	1574, 1635
Bsh1236I	CGCG	1 cut(s)	67
BshFI	GGCC	6 cut(s)	144, 313, 520, 582, 1537, 1603
BshNI	GGYRCC	1 cut(s)	1063
BsiHKAI	GWGCWC	2 cut(s)	1967, 2256
BsiHKCI	CYCGRG	1 cut(s)	1355
BsiSI	CCGG	3 cut(s)	378, 517, 1200
BslFI	GGGAC	4 cut(s)	869, 1682, 1969, 2009
BslI	CCNNNNNNNGG	6 cut(s)	46, 557, 558, 1123, 2027, 2179
BsmAI	GTCTC	5 cut(s)	477, 604, 684, 1652, 1692
BsmFI	GGGAC	4 cut(s)	869, 1682, 1969, 2009
BsnI	GGCC	6 cut(s)	144, 313, 520, 582, 1537, 1603
BsoBI	CYCGRG	1 cut(s)	1355
Bsp1286I	GDGCHC	2 cut(s)	1967, 2256
Bsp1407I	TGTACA	1 cut(s)	990
Bsp19I	CCATGG	2 cut(s)	851, 1217
BspACI	CCGC	5 cut(s)	67, 686, 960, 1124, 2070
BspANI	GGCC	6 cut(s)	144, 313, 520, 582, 1537, 1603
BspCNI	CTCAG	6 cut(s)	73, 163, 278, 294, 448, 1537
BspFNI	CGCG	1 cut(s)	67
BspHI	TCATGA	1 cut(s)	10
BspLI	GGNNCC	4 cut(s)	423, 507, 867, 1065
BspMAI	CTGCAG	1 cut(s)	951
BspMI	ACCTGC	1 cut(s)	175
BspPI	GGATC	7 cut(s)	416, 429, 860, 873, 1231, 1718, 2348
BspT107I	GGYRCC	1 cut(s)	1063
BsrDI	GCAATG	3 cut(s)	343, 732, 1339
BsrFI	RCCGGY	1 cut(s)	516
BsrGI	TGTACA	1 cut(s)	990
BsrI	ACTGG	5 cut(s)	562, 611, 720, 870, 1659
BssAI	RCCGGY	1 cut(s)	516
BssECI	CCNNGG	6 cut(s)	428, 851, 1217, 1356, 2026, 2424
BssNAI	GTATAC	1 cut(s)	362
BssSI	CACGAG	1 cut(s)	415
BssT1I	CCWWGG	3 cut(s)	428, 851, 1217
Bst1107I	GTATAC	1 cut(s)	362
Bst2BI	CACGAG	1 cut(s)	415
Bst2UI	CCWGG	3 cut(s)	1625, 1814, 2028
Bst4CI	ACNGT	4 cut(s)	186, 759, 998, 1663
Bst6I	CTCTTC	5 cut(s)	39, 262, 870, 914, 2394
BstAPI	GCANNNNNTGC	2 cut(s)	1640, 2078
BstAUI	TGTACA	1 cut(s)	990
BstC8I	GCNNGC	2 cut(s)	518, 2004
BstDEI	CTNAG	8 cut(s)	81, 123, 171, 265, 281, 456, 1545, 2122
BstDSI	CCRYGG	2 cut(s)	851, 1217
BstENI	CCTNNNNNAGG	1 cut(s)	2025
BstFNI	CGCG	1 cut(s)	67
BstMAI	GTCTC	5 cut(s)	477, 604, 684, 1652, 1692
BstMWI	GCNNNNNNNGC	6 cut(s)	167, 372, 1640, 1649, 2075, 2078
BstNI	CCWGG	3 cut(s)	1625, 1814, 2028
BstNSI	RCATGY	2 cut(s)	669, 2370
BstPAI	GACNNNNGTC	1 cut(s)	510
BstSCI	CCNGG	3 cut(s)	1623, 1812, 2026
BstSFI	CTRYAG	2 cut(s)	744, 947
BstUI	CGCG	1 cut(s)	67
BstV1I	GCAGC	7 cut(s)	259, 1318, 1575, 1630, 1633, 1636, 2065
BstV2I	GAAGAC	2 cut(s)	1304, 2243
BstX2I	RGATCY	4 cut(s)	295, 421, 865, 1236
BstXI	CCANNNNNNTGG	2 cut(s)	152, 656
BstYI	RGATCY	4 cut(s)	295, 421, 865, 1236
BstZ17I	GTATAC	1 cut(s)	362
Bsu36I	CCTNAGG	1 cut(s)	123
BsuI	GTATCC	1 cut(s)	732
BsuRI	GGCC	6 cut(s)	144, 313, 520, 582, 1537, 1603
BtgI	CCRYGG	2 cut(s)	851, 1217
BtsIMutI	CAGTG	4 cut(s)	555, 764, 877, 1652
BveI	ACCTGC	1 cut(s)	175
Cac8I	GCNNGC	2 cut(s)	518, 2004
CaiI	CAGNNNCTG	4 cut(s)	272, 763, 1544, 2078
CciI	TCATGA	1 cut(s)	10
Cfr10I	RCCGGY	1 cut(s)	516
Cfr13I	GGNCC	5 cut(s)	311, 505, 519, 580, 1535
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	4 cut(s)	405, 991, 1087, 1810
CviQI	GTAC	4 cut(s)	405, 991, 1087, 1810
DdeI	CTNAG	8 cut(s)	81, 123, 171, 265, 281, 456, 1545, 2122
DraIII	CACNNNGTG	1 cut(s)	1013
DrdI	GACNNNNNNGTC	1 cut(s)	2324
DseDI	GACNNNNNNGTC	1 cut(s)	2324
EaeI	YGGCCR	1 cut(s)	142
Eam1104I	CTCTTC	5 cut(s)	39, 262, 870, 914, 2394
EarI	CTCTTC	5 cut(s)	39, 262, 870, 914, 2394
EciI	GGCGGA	1 cut(s)	975
Ecl136II	GAGCTC	1 cut(s)	1965
Eco130I	CCWWGG	3 cut(s)	428, 851, 1217
Eco147I	AGGCCT	1 cut(s)	1603
Eco24I	GRGCYC	1 cut(s)	1967
Eco32I	GATATC	1 cut(s)	2275
Eco47I	GGWCC	1 cut(s)	505
Eco53kI	GAGCTC	1 cut(s)	1965
Eco57I	CTGAAG	7 cut(s)	63, 465, 741, 1334, 1535, 1826, 2289
Eco81I	CCTNAGG	1 cut(s)	123
Eco88I	CYCGRG	1 cut(s)	1355
EcoICRI	GAGCTC	1 cut(s)	1965
EcoNI	CCTNNNNNAGG	1 cut(s)	2025
EcoO109I	RGGNCCY	1 cut(s)	505
EcoRII	CCWGG	3 cut(s)	1623, 1812, 2026
EcoRV	GATATC	1 cut(s)	2275
EcoT14I	CCWWGG	3 cut(s)	428, 851, 1217
EcoT22I	ATGCAT	1 cut(s)	2372
EcoT38I	GRGCYC	1 cut(s)	1967
ErhI	CCWWGG	3 cut(s)	428, 851, 1217
FalI	AAGNNNNNCTT	2 cut(s)	1982, 2014
FaqI	GGGAC	4 cut(s)	869, 1682, 1969, 2009
FauNDI	CATATG	1 cut(s)	808
FbaI	TGATCA	2 cut(s)	133, 247
FblI	GTMKAC	2 cut(s)	361, 930
Fnu4HI	GCNGC	8 cut(s)	273, 1332, 1589, 1644, 1647, 1650, 2070, 2079
FriOI	GRGCYC	1 cut(s)	1967
Fsp4HI	GCNGC	8 cut(s)	273, 1332, 1589, 1644, 1647, 1650, 2070, 2079
FspBI	CTAG	5 cut(s)	591, 819, 1019, 1599, 2144
GluI	GCNGC	8 cut(s)	273, 1332, 1589, 1644, 1647, 1650, 2070, 2079
GsaI	CCCAGC	2 cut(s)	796, 1325
GsuI	CTGGAG	2 cut(s)	628, 1676
HaeIII	GGCC	6 cut(s)	144, 313, 520, 582, 1537, 1603
HapII	CCGG	3 cut(s)	378, 517, 1200
HgaI	GACGC	1 cut(s)	73
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HindIII	AAGCTT	2 cut(s)	159, 908
HpaII	CCGG	3 cut(s)	378, 517, 1200
HphI	GGTGA	1 cut(s)	2159
Hpy166II	GTNNAC	8 cut(s)	213, 362, 755, 931, 1468, 1581, 2104, 2291
Hpy8I	GTNNAC	8 cut(s)	213, 362, 755, 931, 1468, 1581, 2104, 2291
HpyAV	CCTTC	8 cut(s)	70, 562, 1012, 1369, 1519, 2212, 2313, 2398
HpyCH4III	ACNGT	4 cut(s)	186, 759, 998, 1663
HpyCH4IV	ACGT	1 cut(s)	1009
HpyF10VI	GCNNNNNNNGC	6 cut(s)	167, 372, 1640, 1649, 2075, 2078
HpyF3I	CTNAG	8 cut(s)	81, 123, 171, 265, 281, 456, 1545, 2122
HpySE526I	ACGT	1 cut(s)	1009
KroI	GCCGGC	1 cut(s)	516
KroNI	GCCGGC	1 cut(s)	518
Ksp22I	TGATCA	2 cut(s)	133, 247
LmnI	GCTCC	5 cut(s)	835, 952, 1709, 1962, 2251
Lsp1109I	GCAGC	7 cut(s)	259, 1318, 1575, 1630, 1633, 1636, 2065
LweI	GCATC	6 cut(s)	259, 1150, 1420, 1443, 1745, 2398
MaeI	CTAG	5 cut(s)	591, 819, 1019, 1599, 2144
MaeII	ACGT	1 cut(s)	1009
MaeIII	GTNAC	5 cut(s)	21, 450, 661, 888, 1195
MfeI	CAATTG	2 cut(s)	882, 2049
MflI	RGATCY	4 cut(s)	295, 421, 865, 1236
MhlI	GDGCHC	2 cut(s)	1967, 2256
MlsI	TGGCCA	1 cut(s)	144
MluCI	AATT	9 cut(s)	344, 567, 672, 813, 882, 1366, 1748, 1937, 2049
MluNI	TGGCCA	1 cut(s)	144
MlyI	GAGTC	4 cut(s)	248, 469, 896, 1550
MmeI	TCCRAC	3 cut(s)	1539, 1822, 2191
Mox20I	TGGCCA	1 cut(s)	144
Mph1103I	ATGCAT	1 cut(s)	2372
MroNI	GCCGGC	1 cut(s)	516
MroXI	GAANNNNTTC	1 cut(s)	1877
MscI	TGGCCA	1 cut(s)	144
MseI	TTAA	3 cut(s)	533, 566, 1254
MslI	CAYNNNNRTG	2 cut(s)	150, 560
Msp20I	TGGCCA	1 cut(s)	144
MspA1I	CMGCKG	1 cut(s)	1321
MspI	CCGG	3 cut(s)	378, 517, 1200
MspR9I	CCNGG	3 cut(s)	1625, 1814, 2028
MunI	CAATTG	2 cut(s)	882, 2049
MvaI	CCWGG	3 cut(s)	1625, 1814, 2028
MvnI	CGCG	1 cut(s)	67
MwoI	GCNNNNNNNGC	6 cut(s)	167, 372, 1640, 1649, 2075, 2078
NaeI	GCCGGC	1 cut(s)	518
NcoI	CCATGG	2 cut(s)	851, 1217
NdeI	CATATG	1 cut(s)	808
NgoMIV	GCCGGC	1 cut(s)	516
NlaIV	GGNNCC	4 cut(s)	423, 507, 867, 1065
NmuCI	GTSAC	3 cut(s)	21, 661, 888
NsiI	ATGCAT	1 cut(s)	2372
NspI	RCATGY	2 cut(s)	669, 2370
PagI	TCATGA	1 cut(s)	10
PceI	AGGCCT	1 cut(s)	1603
PcsI	WCGNNNNNNNCGW	1 cut(s)	2334
PdiI	GCCGGC	1 cut(s)	518
PdmI	GAANNNNTTC	1 cut(s)	1877
PfeI	GAWTC	6 cut(s)	846, 1529, 1781, 1801, 1889, 2246
PflFI	GACNNNGTC	1 cut(s)	1308
PfoI	TCCNGGA	1 cut(s)	1623
PkrI	GCNGC	8 cut(s)	274, 1333, 1590, 1645, 1648, 1651, 2071, 2080
PleI	GAGTC	4 cut(s)	248, 468, 895, 1549
PpsI	GAGTC	4 cut(s)	248, 468, 895, 1549
PpuMI	RGGWCCY	1 cut(s)	505
PshAI	GACNNNNGTC	1 cut(s)	510
Psp124BI	GAGCTC	1 cut(s)	1967
Psp5II	RGGWCCY	1 cut(s)	505
Psp6I	CCWGG	3 cut(s)	1623, 1812, 2026
PspFI	CCCAGC	2 cut(s)	792, 1321
PspGI	CCWGG	3 cut(s)	1623, 1812, 2026
PspN4I	GGNNCC	4 cut(s)	423, 507, 867, 1065
PspPI	GGNCC	5 cut(s)	311, 505, 519, 580, 1535
PspPPI	RGGWCCY	1 cut(s)	505
PsrI	GAACNNNNNNTAC	2 cut(s)	1073, 1105
PstI	CTGCAG	1 cut(s)	951
PstNI	CAGNNNCTG	4 cut(s)	272, 763, 1544, 2078
PsuI	RGATCY	4 cut(s)	295, 421, 865, 1236
PsyI	GACNNNGTC	1 cut(s)	1308
PvuII	CAGCTG	1 cut(s)	1321
RsaI	GTAC	4 cut(s)	406, 992, 1088, 1811
RsaNI	GTAC	4 cut(s)	405, 991, 1087, 1810
RseI	CAYNNNNRTG	2 cut(s)	150, 560
SacI	GAGCTC	1 cut(s)	1967
SaqAI	TTAA	3 cut(s)	533, 566, 1254
SatI	GCNGC	8 cut(s)	273, 1332, 1589, 1644, 1647, 1650, 2070, 2079
Sau96I	GGNCC	5 cut(s)	311, 505, 519, 580, 1535
SchI	GAGTC	4 cut(s)	248, 469, 896, 1550
ScrFI	CCNGG	3 cut(s)	1625, 1814, 2028
SduI	GDGCHC	2 cut(s)	1967, 2256
SfaNI	GCATC	6 cut(s)	259, 1150, 1420, 1443, 1745, 2398
SfcI	CTRYAG	2 cut(s)	744, 947
SinI	GGWCC	1 cut(s)	505
SmiMI	CAYNNNNRTG	2 cut(s)	150, 560
SmlI	CTYRAG	2 cut(s)	464, 905
SmoI	CTYRAG	2 cut(s)	464, 905
Sse9I	AATT	9 cut(s)	344, 567, 672, 813, 882, 1366, 1748, 1937, 2049
SseBI	AGGCCT	1 cut(s)	1603
SsiI	CCGC	5 cut(s)	67, 686, 960, 1124, 2070
SspI	AATATT	2 cut(s)	1185, 2192
SspMI	CTAG	5 cut(s)	591, 819, 1019, 1599, 2144
SstI	GAGCTC	1 cut(s)	1967
StuI	AGGCCT	1 cut(s)	1603
StyD4I	CCNGG	3 cut(s)	1623, 1812, 2026
StyI	CCWWGG	3 cut(s)	428, 851, 1217
TaaI	ACNGT	4 cut(s)	186, 759, 998, 1663
TaiI	ACGT	1 cut(s)	1012
TaqI	TCGA	4 cut(s)	801, 972, 1315, 2328
TasI	AATT	9 cut(s)	344, 567, 672, 813, 882, 1366, 1748, 1937, 2049
TatI	WGTACW	3 cut(s)	404, 990, 1086
TauI	GCSGC	1 cut(s)	2072
TfiI	GAWTC	6 cut(s)	846, 1529, 1781, 1801, 1889, 2246
Tru1I	TTAA	3 cut(s)	533, 566, 1254
Tru9I	TTAA	3 cut(s)	533, 566, 1254
TscAI	CASTG	4 cut(s)	562, 764, 877, 1659
TseFI	GTSAC	3 cut(s)	21, 661, 888
TseI	GCWGC	7 cut(s)	272, 1331, 1588, 1643, 1646, 1649, 2078
Tsp45I	GTSAC	3 cut(s)	21, 661, 888
TspGWI	ACGGA	1 cut(s)	1975
TspRI	CASTG	4 cut(s)	562, 764, 877, 1659
Tth111I	GACNNNGTC	1 cut(s)	1308
VpaK11BI	GGWCC	1 cut(s)	505
XagI	CCTNNNNNAGG	1 cut(s)	2025
XapI	RAATTY	2 cut(s)	1366, 1937
XceI	RCATGY	2 cut(s)	669, 2370
XmiI	GTMKAC	2 cut(s)	361, 930
XmnI	GAANNNNTTC	1 cut(s)	1877
XspI	CTAG	5 cut(s)	591, 819, 1019, 1599, 2144
Zsp2I	ATGCAT	1 cut(s)	2372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.