Rw5G035790
TCP Family

TCP family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0010547
Physical Location & Seq
Forward (+)
62236248 .. 62236745
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G035790.1

Sequence Viewer

Length: 498 bp
ATGGGAACAAATCCAAGTATCTCAACAAATGCCTCAAGTAGCATAAGTAAGGTCCTTGGCAAAGATTCATCAGAAGACAACAATACAAAGGTTGACGGTCGTGGCCGTCGTATTCGCCTACCACCCATTTGTGCTGCTCGGATCTTTCAGCTTACTCGTGAGCTTGGTCACAAAACCGATGGCCAGACGATAGAGTGGCTCCTAAAACAAGCTGAACCATCTATTCTCGCTGTCACAGGTAACGGTGTCACTCCCAGTAACACTCTTTCGACTCTTGCTTCTGTGAATTTGCAGGTAGAAAAAGTCGTTAGTGAAGACAAAAATTTTGTGAGAAAGAAGTGCACTACGGGTGGCCAACCGTTGCCACCACCCTATGACCATTACCTGAAGATCATTACAAAAAACTATGGTATCGAATTTTCTGTCAATGACGTCGCAATAGATGTGGGGATCGAAACTCAGGAAGAGTTCAAGGAGAAAGATGGAAAACAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

165

Amino Acids

18.04

Weight (kDa)

6.74

Isoelectric Point (pI)

42.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 25 - 107 6.5e-22 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 435
Acc36I ACCTGC 1 cut(s) 283
AclWI GGATC 2 cut(s) 149, 458
AcoI YGGCCR 3 cut(s) 103, 181, 352
AcsI RAATTY 3 cut(s) 286, 322, 416
AcuI CTGAAG 1 cut(s) 407
AcyI GRCGYC 1 cut(s) 432
AgsI TTSAA 1 cut(s) 472
AluBI AGCT 3 cut(s) 151, 163, 212
AluI AGCT 3 cut(s) 151, 163, 212
Alw21I GWGCWC 1 cut(s) 344
Alw44I GTGCAC 1 cut(s) 340
AlwI GGATC 2 cut(s) 149, 458
AoxI GGCC 3 cut(s) 103, 181, 352
ApaLI GTGCAC 1 cut(s) 340
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 3 cut(s) 286, 322, 416
ArsI GACNNNNNNTTYG 4 cut(s) 308, 340, 408, 440
AspS9I GGNCC 1 cut(s) 52
AvaII GGWCC 1 cut(s) 52
BaeGI GKGCMC 1 cut(s) 344
BaeI ACNNNNGTAYC 2 cut(s) 394, 427
BalI TGGCCA 2 cut(s) 183, 354
BauI CACGAG 1 cut(s) 156
BbsI GAAGAC 2 cut(s) 81, 321
Bbv12I GWGCWC 1 cut(s) 344
BbvI GCAGC 1 cut(s) 121
BccI CCATC 3 cut(s) 173, 226, 476
BceAI ACGGC 1 cut(s) 90
BfuAI ACCTGC 1 cut(s) 283
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 200
BmrI ACTGGG 1 cut(s) 249
BmuI ACTGGG 1 cut(s) 249
BpiI GAAGAC 2 cut(s) 81, 321
BpuEI CTTGAG 1 cut(s) 19
BsaHI GRCGYC 1 cut(s) 432
BsaJI CCNNGG 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 55
BseMII CTCAG 1 cut(s) 473
BseNI ACTGG 1 cut(s) 255
BseSI GKGCMC 1 cut(s) 344
BseXI GCAGC 1 cut(s) 121
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 3 cut(s) 105, 183, 354
BsiEI CGRYCG 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 344
BsnI GGCC 3 cut(s) 105, 183, 354
Bsp1286I GDGCHC 1 cut(s) 344
Bsp143I GATC 3 cut(s) 141, 390, 450
BspANI GGCC 3 cut(s) 105, 183, 354
BspCNI CTCAG 1 cut(s) 472
BspLI GGNNCC 1 cut(s) 200
BspMI ACCTGC 1 cut(s) 283
BspPI GGATC 2 cut(s) 149, 458
BsrI ACTGG 1 cut(s) 255
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 3 cut(s) 141, 390, 450
BssNI GRCGYC 1 cut(s) 432
BssSI CACGAG 1 cut(s) 156
BssT1I CCWWGG 1 cut(s) 55
Bst2BI CACGAG 1 cut(s) 156
Bst4CI ACNGT 3 cut(s) 98, 245, 360
Bst6I CTCTTC 1 cut(s) 459
BstACI GRCGYC 1 cut(s) 432
BstDEI CTNAG 1 cut(s) 459
BstKTI GATC 3 cut(s) 144, 393, 453
BstMBI GATC 3 cut(s) 141, 390, 450
BstMCI CGRYCG 1 cut(s) 100
BstSLI GKGCMC 1 cut(s) 344
BstV1I GCAGC 1 cut(s) 121
BstV2I GAAGAC 2 cut(s) 81, 321
BstX2I RGATCY 1 cut(s) 141
BstYI RGATCY 1 cut(s) 141
BsuRI GGCC 3 cut(s) 105, 183, 354
BveI ACCTGC 1 cut(s) 283
Cfr13I GGNCC 1 cut(s) 52
CspCI CAANNNNNGTGG 2 cut(s) 426, 461
CviJI RGCY 7 cut(s) 105, 151, 163, 183, 199, 212, 354
CviKI_1 RGCY 7 cut(s) 105, 151, 163, 183, 199, 212, 354
DdeI CTNAG 1 cut(s) 459
DpnI GATC 3 cut(s) 143, 392, 452
DpnII GATC 3 cut(s) 141, 390, 450
EaeI YGGCCR 3 cut(s) 103, 181, 352
Eam1104I CTCTTC 1 cut(s) 459
EarI CTCTTC 1 cut(s) 459
Eco130I CCWWGG 1 cut(s) 55
Eco47I GGWCC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 407
EcoO109I RGGNCCY 1 cut(s) 52
EcoT14I CCWWGG 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 55
FaiI YATR 3 cut(s) 44, 375, 408
Fnu4HI GCNGC 1 cut(s) 135
Fsp4HI GCNGC 1 cut(s) 135
GluI GCNGC 1 cut(s) 135
HaeIII GGCC 3 cut(s) 105, 183, 354
Hin1I GRCGYC 1 cut(s) 432
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HinfI GANTC 2 cut(s) 65, 271
Hpy166II GTNNAC 2 cut(s) 94, 342
Hpy188I TCNGA 2 cut(s) 73, 141
Hpy188III TCNNGA 2 cut(s) 158, 461
Hpy8I GTNNAC 2 cut(s) 94, 342
Hpy99I CGWCG 2 cut(s) 111, 437
HpyCH4III ACNGT 3 cut(s) 98, 245, 360
HpyCH4IV ACGT 1 cut(s) 432
HpyCH4V TGCA 2 cut(s) 292, 342
HpyF3I CTNAG 1 cut(s) 459
HpySE526I ACGT 1 cut(s) 432
Hsp92I GRCGYC 1 cut(s) 432
Kzo9I GATC 3 cut(s) 141, 390, 450
LmnI GCTCC 1 cut(s) 204
LpnPI CCDG 6 cut(s) 197, 222, 268, 278, 398, 446
Lsp1109I GCAGC 1 cut(s) 121
MaeII ACGT 1 cut(s) 432
MaeIII GTNAC 5 cut(s) 167, 232, 239, 247, 257
MalI GATC 3 cut(s) 143, 392, 452
MboI GATC 3 cut(s) 141, 390, 450
MboII GAAGA 4 cut(s) 86, 326, 400, 476
MflI RGATCY 1 cut(s) 141
MhlI GDGCHC 1 cut(s) 344
MlsI TGGCCA 2 cut(s) 183, 354
MluCI AATT 3 cut(s) 286, 322, 416
MluNI TGGCCA 2 cut(s) 183, 354
MlyI GAGTC 1 cut(s) 265
MnlI CCTC 1 cut(s) 43
Mox20I TGGCCA 2 cut(s) 183, 354
MscI TGGCCA 2 cut(s) 183, 354
Msp20I TGGCCA 2 cut(s) 183, 354
NdeII GATC 3 cut(s) 141, 390, 450
NlaIV GGNNCC 1 cut(s) 200
NmuCI GTSAC 3 cut(s) 167, 232, 247
PcsI WCGNNNNNNNCGW 1 cut(s) 106
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 136
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
PpuMI RGGWCCY 1 cut(s) 52
Psp5II RGGWCCY 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 200
PspPI GGNCC 1 cut(s) 52
PspPPI RGGWCCY 1 cut(s) 52
PsuI RGATCY 1 cut(s) 141
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 3 cut(s) 141, 390, 450
Sau96I GGNCC 1 cut(s) 52
SchI GAGTC 1 cut(s) 265
SduI GDGCHC 1 cut(s) 344
SetI ASST 9 cut(s) 54, 93, 153, 165, 214, 241, 297, 387, 435
SinI GGWCC 1 cut(s) 52
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
Sse9I AATT 3 cut(s) 286, 322, 416
StyI CCWWGG 1 cut(s) 55
TaaI ACNGT 3 cut(s) 98, 245, 360
TaiI ACGT 1 cut(s) 435
TaqI TCGA 3 cut(s) 269, 414, 453
TasI AATT 3 cut(s) 286, 322, 416
TfiI GAWTC 1 cut(s) 65
TseFI GTSAC 3 cut(s) 167, 232, 247
TseI GCWGC 1 cut(s) 134
Tsp45I GTSAC 3 cut(s) 167, 232, 247
TspDTI ATGAA 1 cut(s) 57
VneI GTGCAC 1 cut(s) 340
VpaK11BI GGWCC 1 cut(s) 52
XapI RAATTY 3 cut(s) 286, 322, 416
ZraI GACGTC 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.