Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000367.1

Orthogroup ID

OG0010547

Physical Location & Seq

Genomic Coordinates Forward (+)

120789 .. 121484

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000367.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atgagtgtgaatgacatggcatgccacctaaaattgaggccacaaatcattttccttttgtatcgtggctggaaggtaacatgggcaataaaaggaggcagcttacaagaacaagttgcccttaagcctcaactctttatcaccaaccccaaacaatttctggagcactcgtatgtgctaataatctatttgcttacaatgggaacaaatccaagtatctcaacaaatgcctcaagtagcataagtaaggtccttggcaaagattcatcagaagacaacaatacaaaggttgacggtcgtggccgtcgtattcgcctaccacccatttgtgctgctcggatctttcagcttactcatgagcttggtcacaaaaccgatggccagacgatagagtggctcctaaaacaagctgaaccatctattctcgctgtcacaggtaacggtgtcactcccagtaacactctttcgactctagcttctgtgaatttgcaggtagaaaaagtcgttagtgaagacaaaaattttgtgagaaagaagtgcactacgggtggccaaccgttgccaccaccctatgaccattacctgaagatcattacaaaaaactatggtatcgaattttctgtcaatgacgtcgcaatagatgtggggatcgaaactcaggaagagttcaaggagaaagatggaaaacaagattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

231

Amino Acids

25.72

Weight (kDa)

8.66

Isoelectric Point (pI)

40.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g31470 FvH4_3g31480
rosa_laevigata	RLG00000035198 RLG00000035199
rosa_multiflora	Rmu_sc0000367.1_g000023 Rmu_sc0000367.1_g000029 Rmu_sc0000367.1_g000031 Rmu_sc0000367.1_g000032 Rmu_sc0000367.1_g000033
rosa_roxburghii	Rroxscaffold_1G00022400 Rroxscaffold_1G00022420
rosa_rugosa	Rorug05G0312200
rosa_samantha	Rh5AG380200 Rh5BG391200 Rh5BG391300 Rh5CG415100 Rh5CG415200 Rh5DG405900 Rh5DG406000
rosa_wichuraiana	Rw5G035780 Rw5G035790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	633
Acc36I	ACCTGC	1 cut(s)	481
AclWI	GGATC	2 cut(s)	347, 656
AcoI	YGGCCR	3 cut(s)	301, 379, 550
AcsI	RAATTY	3 cut(s)	484, 520, 614
AcuI	CTGAAG	1 cut(s)	605
AcyI	GRCGYC	1 cut(s)	630
AflII	CTTAAG	1 cut(s)	122
AgsI	TTSAA	1 cut(s)	670
AluBI	AGCT	5 cut(s)	102, 349, 361, 410, 476
AluI	AGCT	5 cut(s)	102, 349, 361, 410, 476
Alw21I	GWGCWC	2 cut(s)	168, 542
Alw44I	GTGCAC	1 cut(s)	538
AlwI	GGATC	2 cut(s)	347, 656
AoxI	GGCC	4 cut(s)	38, 301, 379, 550
ApaLI	GTGCAC	1 cut(s)	538
ApeKI	GCWGC	2 cut(s)	99, 332
ApoI	RAATTY	3 cut(s)	484, 520, 614
ArsI	GACNNNNNNTTYG	4 cut(s)	506, 538, 606, 638
AspS9I	GGNCC	1 cut(s)	250
AsuHPI	GGTGA	1 cut(s)	133
AvaII	GGWCC	1 cut(s)	250
BaeGI	GKGCMC	1 cut(s)	542
BaeI	ACNNNNGTAYC	2 cut(s)	592, 625
BalI	TGGCCA	2 cut(s)	381, 552
BbsI	GAAGAC	2 cut(s)	279, 519
Bbv12I	GWGCWC	2 cut(s)	168, 542
BbvI	GCAGC	2 cut(s)	111, 319
BccI	CCATC	3 cut(s)	371, 424, 674
BceAI	ACGGC	1 cut(s)	288
BfaI	CTAG	1 cut(s)	473
BfrI	CTTAAG	1 cut(s)	122
BfuAI	ACCTGC	1 cut(s)	481
BisI	GCNGC	2 cut(s)	100, 333
BlsI	GCNGC	2 cut(s)	101, 334
Bme18I	GGWCC	1 cut(s)	250
BmgT120I	GGNCC	1 cut(s)	250
BmiI	GGNNCC	1 cut(s)	398
BmrI	ACTGGG	1 cut(s)	447
BmuI	ACTGGG	1 cut(s)	447
BpiI	GAAGAC	2 cut(s)	279, 519
BpmI	CTGGAG	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	217
BsaHI	GRCGYC	1 cut(s)	630
BsaJI	CCNNGG	1 cut(s)	253
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bse1I	ACTGG	1 cut(s)	453
BseDI	CCNNGG	1 cut(s)	253
BseMII	CTCAG	1 cut(s)	671
BseNI	ACTGG	1 cut(s)	453
BseSI	GKGCMC	1 cut(s)	542
BseXI	GCAGC	2 cut(s)	111, 319
Bsh1285I	CGRYCG	1 cut(s)	298
BshFI	GGCC	4 cut(s)	40, 303, 381, 552
BsiEI	CGRYCG	1 cut(s)	298
BsiHKAI	GWGCWC	2 cut(s)	168, 542
BsnI	GGCC	4 cut(s)	40, 303, 381, 552
Bsp1286I	GDGCHC	2 cut(s)	168, 542
Bsp143I	GATC	3 cut(s)	339, 588, 648
BspANI	GGCC	4 cut(s)	40, 303, 381, 552
BspCNI	CTCAG	1 cut(s)	670
BspHI	TCATGA	1 cut(s)	355
BspLI	GGNNCC	1 cut(s)	398
BspMI	ACCTGC	1 cut(s)	481
BspPI	GGATC	2 cut(s)	347, 656
BspTI	CTTAAG	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	453
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	3 cut(s)	339, 588, 648
BssNI	GRCGYC	1 cut(s)	630
BssT1I	CCWWGG	1 cut(s)	253
Bst4CI	ACNGT	3 cut(s)	296, 443, 558
Bst6I	CTCTTC	1 cut(s)	657
BstACI	GRCGYC	1 cut(s)	630
BstAFI	CTTAAG	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	22
BstDEI	CTNAG	1 cut(s)	657
BstKTI	GATC	3 cut(s)	342, 591, 651
BstMBI	GATC	3 cut(s)	339, 588, 648
BstMCI	CGRYCG	1 cut(s)	298
BstNSI	RCATGY	1 cut(s)	24
BstSLI	GKGCMC	1 cut(s)	542
BstV1I	GCAGC	2 cut(s)	111, 319
BstV2I	GAAGAC	2 cut(s)	279, 519
BstX2I	RGATCY	1 cut(s)	339
BstYI	RGATCY	1 cut(s)	339
BsuRI	GGCC	4 cut(s)	40, 303, 381, 552
BveI	ACCTGC	1 cut(s)	481
Cac8I	GCNNGC	1 cut(s)	22
CciI	TCATGA	1 cut(s)	355
Cfr13I	GGNCC	1 cut(s)	250
CspCI	CAANNNNNGTGG	2 cut(s)	624, 659
CviAII	CATG	4 cut(s)	16, 21, 81, 356
DdeI	CTNAG	1 cut(s)	657
DpnI	GATC	3 cut(s)	341, 590, 650
DpnII	GATC	3 cut(s)	339, 588, 648
EaeI	YGGCCR	3 cut(s)	301, 379, 550
Eam1104I	CTCTTC	1 cut(s)	657
EarI	CTCTTC	1 cut(s)	657
Eco130I	CCWWGG	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	605
EcoO109I	RGGNCCY	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	4 cut(s)	19, 24, 84, 359
FaiI	YATR	8 cut(s)	17, 22, 82, 174, 242, 357, 573, 606
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FatI	CATG	4 cut(s)	15, 20, 80, 355
Fnu4HI	GCNGC	2 cut(s)	100, 333
Fsp4HI	GCNGC	2 cut(s)	100, 333
FspBI	CTAG	1 cut(s)	473
GluI	GCNGC	2 cut(s)	100, 333
GsuI	CTGGAG	1 cut(s)	182
HaeIII	GGCC	4 cut(s)	40, 303, 381, 552
Hin1I	GRCGYC	1 cut(s)	630
Hin1II	CATG	4 cut(s)	19, 24, 84, 359
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	2 cut(s)	263, 469
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	2 cut(s)	292, 540
Hpy188I	TCNGA	2 cut(s)	271, 339
Hpy188III	TCNNGA	3 cut(s)	161, 356, 659
Hpy8I	GTNNAC	2 cut(s)	292, 540
Hpy99I	CGWCG	2 cut(s)	309, 635
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	3 cut(s)	296, 443, 558
HpyCH4IV	ACGT	1 cut(s)	630
HpyCH4V	TGCA	2 cut(s)	490, 540
HpyF3I	CTNAG	1 cut(s)	657
HpySE526I	ACGT	1 cut(s)	630
Hsp92I	GRCGYC	1 cut(s)	630
Hsp92II	CATG	4 cut(s)	19, 24, 84, 359
Kzo9I	GATC	3 cut(s)	339, 588, 648
LmnI	GCTCC	2 cut(s)	163, 402
LpnPI	CCDG	8 cut(s)	55, 146, 395, 420, 466, 476, 596, 644
Lsp1109I	GCAGC	2 cut(s)	111, 319
MaeI	CTAG	1 cut(s)	473
MaeII	ACGT	1 cut(s)	630
MaeIII	GTNAC	6 cut(s)	76, 365, 430, 437, 445, 455
MalI	GATC	3 cut(s)	341, 590, 650
MboI	GATC	3 cut(s)	339, 588, 648
MboII	GAAGA	4 cut(s)	284, 524, 598, 674
MflI	RGATCY	1 cut(s)	339
MhlI	GDGCHC	2 cut(s)	168, 542
MlsI	TGGCCA	2 cut(s)	381, 552
MluCI	AATT	5 cut(s)	32, 155, 484, 520, 614
MluNI	TGGCCA	2 cut(s)	381, 552
MlyI	GAGTC	1 cut(s)	463
MnlI	CCTC	4 cut(s)	30, 89, 138, 241
Mox20I	TGGCCA	2 cut(s)	381, 552
MscI	TGGCCA	2 cut(s)	381, 552
MseI	TTAA	1 cut(s)	123
MslI	CAYNNNNRTG	1 cut(s)	171
Msp20I	TGGCCA	2 cut(s)	381, 552
MspCI	CTTAAG	1 cut(s)	122
NdeII	GATC	3 cut(s)	339, 588, 648
NlaIII	CATG	4 cut(s)	19, 24, 84, 359
NlaIV	GGNNCC	1 cut(s)	398
NmuCI	GTSAC	3 cut(s)	365, 430, 445
NspI	RCATGY	1 cut(s)	24
PaeI	GCATGC	1 cut(s)	24
PagI	TCATGA	1 cut(s)	355
PcsI	WCGNNNNNNNCGW	1 cut(s)	304
PfeI	GAWTC	1 cut(s)	263
PkrI	GCNGC	2 cut(s)	101, 334
PleI	GAGTC	1 cut(s)	463
PpsI	GAGTC	1 cut(s)	463
PpuMI	RGGWCCY	1 cut(s)	250
Psp5II	RGGWCCY	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	398
PspPI	GGNCC	1 cut(s)	250
PspPPI	RGGWCCY	1 cut(s)	250
PsuI	RGATCY	1 cut(s)	339
RseI	CAYNNNNRTG	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	2 cut(s)	100, 333
Sau3AI	GATC	3 cut(s)	339, 588, 648
Sau96I	GGNCC	1 cut(s)	250
SchI	GAGTC	1 cut(s)	463
SduI	GDGCHC	2 cut(s)	168, 542
SinI	GGWCC	1 cut(s)	250
SmiMI	CAYNNNNRTG	1 cut(s)	171
SmlI	CTYRAG	2 cut(s)	122, 232
SmoI	CTYRAG	2 cut(s)	122, 232
SphI	GCATGC	1 cut(s)	24
Sse9I	AATT	5 cut(s)	32, 155, 484, 520, 614
SspMI	CTAG	1 cut(s)	473
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	3 cut(s)	296, 443, 558
TaiI	ACGT	1 cut(s)	633
TaqI	TCGA	3 cut(s)	467, 612, 651
TasI	AATT	5 cut(s)	32, 155, 484, 520, 614
TfiI	GAWTC	1 cut(s)	263
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TseFI	GTSAC	3 cut(s)	365, 430, 445
TseI	GCWGC	2 cut(s)	99, 332
Tsp45I	GTSAC	3 cut(s)	365, 430, 445
TspDTI	ATGAA	1 cut(s)	255
Vha464I	CTTAAG	1 cut(s)	122
VneI	GTGCAC	1 cut(s)	538
VpaK11BI	GGWCC	1 cut(s)	250
XapI	RAATTY	3 cut(s)	484, 520, 614
XceI	RCATGY	1 cut(s)	24
XcmI	CCANNNNNNNNNTGG	1 cut(s)	157
XspI	CTAG	1 cut(s)	473
ZraI	GACGTC	1 cut(s)	631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.