FvH4_3g31480
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0010547
Physical Location & Seq
Forward (+)
25730584 .. 25731278
695 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g31480.t1

Sequence Viewer

Length: 480 bp
ATGGGAACAAATCCATGGAATGCCTCAAGAAGCAGAAATAAGGTCCTTGGCAAAGCTTCATCAGAAGACAACAACACAAAGGTTGATGGTCATGGCCACCGTACTCGCCTACCACCCACTTGTGCTGCTTGGATCTTTCAGTTTACTCGTGAGCTTGGTCACAAAACCGATGGCCAGACCATAGAGTGGCTCTTAAAACAAGCTGAACCATCTATTCTTGTTGTCACAGGTAACAGTGTCACTCCCAGCAACACTTCTTCAACTCTAGTTTCTGTGAATATGCAGGCAGGAAATGTCGTTAGTGAAGACAAGAATTCTCTGAGGAAGAAGTGCACTAAGGGCGGCGGCCAACCGATGCCACCTCCCTATGACCATTACCTGAAGATCATTACAAAAAACTATAGTATTGAATTTTCTGTCAATGATGTCGCAATAGATGTGGGGATCGAAGCACAACGTGAAGATGAAAGACAAGATTAG

Protein Analysis

160

Amino Acids

17.55

Weight (kDa)

7.8

Isoelectric Point (pI)

48.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 22 - 109 8.5e-17 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 186
AciI CCGC 2 cut(s) 342, 345
AclWI GGATC 2 cut(s) 140, 452
AcoI YGGCCR 3 cut(s) 94, 172, 346
AcsI RAATTY 2 cut(s) 313, 410
AcuI CTGAAG 1 cut(s) 401
AdeI CACNNNGTG 1 cut(s) 458
AfaI GTAC 1 cut(s) 103
AfiI CCNNNNNNNGG 1 cut(s) 186
AgsI TTSAA 2 cut(s) 261, 410
AluBI AGCT 3 cut(s) 56, 154, 203
AluI AGCT 3 cut(s) 56, 154, 203
Alw21I GWGCWC 1 cut(s) 335
Alw44I GTGCAC 1 cut(s) 331
AlwI GGATC 2 cut(s) 140, 452
AoxI GGCC 3 cut(s) 94, 172, 346
ApaLI GTGCAC 1 cut(s) 331
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 2 cut(s) 313, 410
AspS9I GGNCC 1 cut(s) 43
AvaII GGWCC 1 cut(s) 43
BaeGI GKGCMC 1 cut(s) 335
BalI TGGCCA 2 cut(s) 96, 174
BauI CACGAG 1 cut(s) 147
BbsI GAAGAC 2 cut(s) 72, 312
Bbv12I GWGCWC 1 cut(s) 335
BbvI GCAGC 1 cut(s) 112
BccI CCATC 3 cut(s) 80, 164, 217
BfaI CTAG 1 cut(s) 266
BfmI CTRYAG 1 cut(s) 400
BisI GCNGC 3 cut(s) 126, 343, 346
BlsI GCNGC 3 cut(s) 127, 344, 347
Bme18I GGWCC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 43
BmsI GCATC 1 cut(s) 345
BpiI GAAGAC 2 cut(s) 72, 312
BpuEI CTTGAG 1 cut(s) 10
BsaJI CCNNGG 2 cut(s) 14, 46
Bsc4I CCNNNNNNNGG 1 cut(s) 186
BseDI CCNNGG 2 cut(s) 14, 46
BseLI CCNNNNNNNGG 1 cut(s) 186
BseMII CTCAG 1 cut(s) 311
BseSI GKGCMC 1 cut(s) 335
BseXI GCAGC 1 cut(s) 112
BseYI CCCAGC 1 cut(s) 245
BshFI GGCC 3 cut(s) 96, 174, 348
BsiHKAI GWGCWC 1 cut(s) 335
BslI CCNNNNNNNGG 1 cut(s) 186
BsmI GAATGC 1 cut(s) 25
BsnI GGCC 3 cut(s) 96, 174, 348
Bsp1286I GDGCHC 1 cut(s) 335
Bsp143I GATC 3 cut(s) 132, 384, 444
Bsp19I CCATGG 1 cut(s) 14
BspACI CCGC 2 cut(s) 342, 345
BspANI GGCC 3 cut(s) 96, 174, 348
BspCNI CTCAG 1 cut(s) 312
BspPI GGATC 2 cut(s) 140, 452
BssECI CCNNGG 2 cut(s) 14, 46
BssMI GATC 3 cut(s) 132, 384, 444
BssSI CACGAG 1 cut(s) 147
BssT1I CCWWGG 2 cut(s) 14, 46
Bst2BI CACGAG 1 cut(s) 147
Bst4CI ACNGT 2 cut(s) 101, 236
BstC8I GCNNGC 1 cut(s) 285
BstDEI CTNAG 2 cut(s) 320, 336
BstDSI CCRYGG 1 cut(s) 14
BstKTI GATC 3 cut(s) 135, 387, 447
BstMBI GATC 3 cut(s) 132, 384, 444
BstMWI GCNNNNNNNGC 1 cut(s) 339
BstSFI CTRYAG 1 cut(s) 400
BstSLI GKGCMC 1 cut(s) 335
BstV1I GCAGC 1 cut(s) 112
BstV2I GAAGAC 2 cut(s) 72, 312
BstX2I RGATCY 1 cut(s) 132
BstYI RGATCY 1 cut(s) 132
BsuRI GGCC 3 cut(s) 96, 174, 348
BtgI CCRYGG 1 cut(s) 14
BtsIMutI CAGTG 1 cut(s) 241
Cac8I GCNNGC 1 cut(s) 285
Cfr13I GGNCC 1 cut(s) 43
Csp6I GTAC 1 cut(s) 102
CspCI CAANNNNNGTGG 2 cut(s) 420, 455
CviAII CATG 2 cut(s) 15, 92
CviJI RGCY 7 cut(s) 56, 96, 154, 174, 190, 203, 348
CviKI_1 RGCY 7 cut(s) 56, 96, 154, 174, 190, 203, 348
CviQI GTAC 1 cut(s) 102
DdeI CTNAG 2 cut(s) 320, 336
DpnI GATC 3 cut(s) 134, 386, 446
DpnII GATC 3 cut(s) 132, 384, 444
DraIII CACNNNGTG 1 cut(s) 458
EaeI YGGCCR 3 cut(s) 94, 172, 346
Eco130I CCWWGG 2 cut(s) 14, 46
Eco47I GGWCC 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 401
EcoO109I RGGNCCY 1 cut(s) 43
EcoRI GAATTC 1 cut(s) 313
EcoT14I CCWWGG 2 cut(s) 14, 46
ErhI CCWWGG 2 cut(s) 14, 46
FaeI CATG 2 cut(s) 18, 95
FaiI YATR 6 cut(s) 16, 93, 182, 281, 369, 402
FatI CATG 2 cut(s) 14, 91
Fnu4HI GCNGC 3 cut(s) 126, 343, 346
Fsp4HI GCNGC 3 cut(s) 126, 343, 346
FspBI CTAG 1 cut(s) 266
GluI GCNGC 3 cut(s) 126, 343, 346
GsaI CCCAGC 1 cut(s) 249
HaeIII GGCC 3 cut(s) 96, 174, 348
Hin1II CATG 2 cut(s) 18, 95
HindIII AAGCTT 1 cut(s) 54
Hpy166II GTNNAC 2 cut(s) 144, 333
Hpy188I TCNGA 2 cut(s) 64, 321
Hpy188III TCNNGA 2 cut(s) 27, 149
Hpy8I GTNNAC 2 cut(s) 144, 333
HpyCH4III ACNGT 2 cut(s) 101, 236
HpyCH4IV ACGT 1 cut(s) 457
HpyCH4V TGCA 2 cut(s) 283, 333
HpyF10VI GCNNNNNNNGC 1 cut(s) 339
HpyF3I CTNAG 2 cut(s) 320, 336
HpySE526I ACGT 1 cut(s) 457
Hsp92II CATG 2 cut(s) 18, 95
Kzo9I GATC 3 cut(s) 132, 384, 444
LpnPI CCDG 6 cut(s) 188, 213, 259, 269, 273, 392
Lsp1109I GCAGC 1 cut(s) 112
LweI GCATC 1 cut(s) 345
MaeI CTAG 1 cut(s) 266
MaeII ACGT 1 cut(s) 457
MaeIII GTNAC 4 cut(s) 158, 223, 230, 238
MalI GATC 3 cut(s) 134, 386, 446
MboI GATC 3 cut(s) 132, 384, 444
MboII GAAGA 6 cut(s) 77, 249, 317, 337, 394, 473
MflI RGATCY 1 cut(s) 132
MhlI GDGCHC 1 cut(s) 335
MlsI TGGCCA 2 cut(s) 96, 174
MluCI AATT 2 cut(s) 313, 410
MluNI TGGCCA 2 cut(s) 96, 174
MnlI CCTC 3 cut(s) 34, 315, 372
Mox20I TGGCCA 2 cut(s) 96, 174
MscI TGGCCA 2 cut(s) 96, 174
MseI TTAA 1 cut(s) 194
Msp20I TGGCCA 2 cut(s) 96, 174
Mva1269I GAATGC 1 cut(s) 25
MwoI GCNNNNNNNGC 1 cut(s) 339
NcoI CCATGG 1 cut(s) 14
NdeII GATC 3 cut(s) 132, 384, 444
NlaIII CATG 2 cut(s) 18, 95
NmuCI GTSAC 3 cut(s) 158, 223, 238
PctI GAATGC 1 cut(s) 25
PflMI CCANNNNNTGG 1 cut(s) 186
PkrI GCNGC 3 cut(s) 127, 344, 347
PpuMI RGGWCCY 1 cut(s) 43
Psp5II RGGWCCY 1 cut(s) 43
PspFI CCCAGC 1 cut(s) 245
PspPI GGNCC 1 cut(s) 43
PspPPI RGGWCCY 1 cut(s) 43
PsuI RGATCY 1 cut(s) 132
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
SaqAI TTAA 1 cut(s) 194
SatI GCNGC 3 cut(s) 126, 343, 346
Sau3AI GATC 3 cut(s) 132, 384, 444
Sau96I GGNCC 1 cut(s) 43
SduI GDGCHC 1 cut(s) 335
SetI ASST 9 cut(s) 45, 58, 84, 156, 205, 232, 364, 381, 460
SfaNI GCATC 1 cut(s) 345
SfcI CTRYAG 1 cut(s) 400
SinI GGWCC 1 cut(s) 43
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
Sse9I AATT 2 cut(s) 313, 410
SsiI CCGC 2 cut(s) 342, 345
SspMI CTAG 1 cut(s) 266
StyI CCWWGG 2 cut(s) 14, 46
TaaI ACNGT 2 cut(s) 101, 236
TaiI ACGT 1 cut(s) 460
TaqI TCGA 1 cut(s) 447
TasI AATT 2 cut(s) 313, 410
TauI GCSGC 2 cut(s) 345, 348
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TscAI CASTG 1 cut(s) 241
TseFI GTSAC 3 cut(s) 158, 223, 238
TseI GCWGC 1 cut(s) 125
Tsp45I GTSAC 3 cut(s) 158, 223, 238
TspDTI ATGAA 2 cut(s) 48, 480
TspRI CASTG 1 cut(s) 241
Van91I CCANNNNNTGG 1 cut(s) 186
VneI GTGCAC 1 cut(s) 331
VpaK11BI GGWCC 1 cut(s) 43
XapI RAATTY 2 cut(s) 313, 410
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.