Rroxscaffold_1G00022420
TCP Family

TCP family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0010547
Physical Location & Seq
Reverse (-)
27691535 .. 27692044
510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00022420.1

Sequence Viewer

Length: 510 bp
ATGGGAATAGAATCAAACTTTTCAACCAATGCCTCAAGCAGTAGAAATCAAGTCCTCCTTGGCAAAGGTTCAACAACAGATGGCCACACAAAGGTTGAAGGTGGTGAATGCGGTATTATCTTGCCAAAGTCATGTGTTGCTCGTATAGCTCAACTCACTCGTGATCTTGGTCACAATACCAATGGTCAAACAGTAGAGTGGCTCTTACAACAAGCTGAACCATTTATTATCGCTGCCACTGGGAAAAAGGTCTCCCCGATTAATACGCCTTCAACTCTAGTTGCTGTGGATTTGGAGGAGAATGCTGTTAGTCTTGAAGACAAAGATTTGGTTAAGAAGAAGCGCACTATAAGTGACCAACCGCTGCTACCTGCTTATGACTATTATTTGAGGTTGGTTACACAAAACTATGAAATTGCTGACTTTTCTGCCAATGATGTTGCAATAGATGTAGGGATCCAAACTCAGGAAGAAACCAAGAATCAGGATGGGGAAGAAAGACTAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

169

Amino Acids

18.45

Weight (kDa)

4.74

Isoelectric Point (pI)

37.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 24 - 108 8.8e-13 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 379
AciI CCGC 2 cut(s) 111, 362
AclWI GGATC 2 cut(s) 451, 464
AcoI YGGCCR 1 cut(s) 82
AfiI CCNNNNNNNGG 2 cut(s) 91, 466
AgsI TTSAA 5 cut(s) 24, 72, 98, 273, 317
AluBI AGCT 2 cut(s) 149, 215
AluI AGCT 2 cut(s) 149, 215
Alw26I GTCTC 1 cut(s) 256
AlwI GGATC 2 cut(s) 451, 464
AoxI GGCC 1 cut(s) 82
ApeKI GCWGC 2 cut(s) 233, 364
AseI ATTAAT 1 cut(s) 261
AspLEI GCGC 1 cut(s) 345
AsuHPI GGTGA 1 cut(s) 116
BalI TGGCCA 1 cut(s) 84
BamHI GGATCC 1 cut(s) 456
BauI CACGAG 1 cut(s) 159
BbsI GAAGAC 1 cut(s) 324
BbvI GCAGC 2 cut(s) 220, 351
BccI CCATC 2 cut(s) 74, 482
BcoDI GTCTC 1 cut(s) 256
BfaI CTAG 2 cut(s) 278, 503
BfuAI ACCTGC 1 cut(s) 379
BisI GCNGC 2 cut(s) 234, 365
BlsI GCNGC 2 cut(s) 235, 366
BmiI GGNNCC 1 cut(s) 458
BmrI ACTGGG 1 cut(s) 249
BmuI ACTGGG 1 cut(s) 249
BpiI GAAGAC 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 19
BsaI GGTCTC 1 cut(s) 256
BsaJI CCNNGG 1 cut(s) 58
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 466
Bse1I ACTGG 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 58
BseGI GGATG 1 cut(s) 493
BseLI CCNNNNNNNGG 2 cut(s) 91, 466
BseMII CTCAG 1 cut(s) 479
BseNI ACTGG 1 cut(s) 244
BseRI GAGGAG 1 cut(s) 311
BseXI GCAGC 2 cut(s) 220, 351
BshFI GGCC 1 cut(s) 84
BslI CCNNNNNNNGG 2 cut(s) 91, 466
BsmAI GTCTC 1 cut(s) 256
BsmI GAATGC 2 cut(s) 113, 307
BsnI GGCC 1 cut(s) 84
Bso31I GGTCTC 1 cut(s) 256
Bsp143I GATC 2 cut(s) 163, 456
BspACI CCGC 2 cut(s) 111, 362
BspANI GGCC 1 cut(s) 84
BspCNI CTCAG 1 cut(s) 478
BspLI GGNNCC 1 cut(s) 458
BspMI ACCTGC 1 cut(s) 379
BspPI GGATC 2 cut(s) 451, 464
BspTNI GGTCTC 1 cut(s) 256
BsrI ACTGG 1 cut(s) 244
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 2 cut(s) 163, 456
BssSI CACGAG 1 cut(s) 159
BssT1I CCWWGG 1 cut(s) 58
Bst2BI CACGAG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 193
BstDEI CTNAG 1 cut(s) 465
BstF5I GGATG 1 cut(s) 493
BstHHI GCGC 1 cut(s) 345
BstKTI GATC 2 cut(s) 166, 459
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 2 cut(s) 163, 456
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstV1I GCAGC 2 cut(s) 220, 351
BstV2I GAAGAC 1 cut(s) 324
BstX2I RGATCY 1 cut(s) 456
BstYI RGATCY 1 cut(s) 456
BsuRI GGCC 1 cut(s) 84
BtsCI GGATG 1 cut(s) 493
BtsIMutI CAGTG 1 cut(s) 237
BveI ACCTGC 1 cut(s) 379
CfoI GCGC 1 cut(s) 345
CviAII CATG 1 cut(s) 132
CviJI RGCY 4 cut(s) 84, 149, 202, 215
CviKI_1 RGCY 4 cut(s) 84, 149, 202, 215
DdeI CTNAG 1 cut(s) 465
DpnI GATC 2 cut(s) 165, 458
DpnII GATC 2 cut(s) 163, 456
EaeI YGGCCR 1 cut(s) 82
Eco130I CCWWGG 1 cut(s) 58
Eco31I GGTCTC 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 1 cut(s) 135
FaiI YATR 5 cut(s) 133, 146, 350, 378, 411
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FatI CATG 1 cut(s) 131
Fnu4HI GCNGC 2 cut(s) 234, 365
FokI GGATG 1 cut(s) 500
Fsp4HI GCNGC 2 cut(s) 234, 365
FspBI CTAG 2 cut(s) 278, 503
GlaI GCGC 1 cut(s) 344
GluI GCNGC 2 cut(s) 234, 365
HaeIII GGCC 1 cut(s) 84
HhaI GCGC 1 cut(s) 345
Hin1II CATG 1 cut(s) 135
Hin6I GCGC 1 cut(s) 343
HinP1I GCGC 1 cut(s) 343
HinfI GANTC 2 cut(s) 11, 481
HphI GGTGA 1 cut(s) 116
Hpy188III TCNNGA 4 cut(s) 161, 314, 467, 485
HpyAV CCTTC 2 cut(s) 92, 279
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4V TGCA 1 cut(s) 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 1 cut(s) 465
Hsp92II CATG 1 cut(s) 135
HspAI GCGC 1 cut(s) 343
Kzo9I GATC 2 cut(s) 163, 456
LpnPI CCDG 4 cut(s) 225, 384, 452, 470
Lsp1109I GCAGC 2 cut(s) 220, 351
MaeI CTAG 2 cut(s) 278, 503
MaeIII GTNAC 3 cut(s) 170, 353, 397
MalI GATC 2 cut(s) 165, 458
MboI GATC 2 cut(s) 163, 456
MboII GAAGA 4 cut(s) 329, 349, 482, 506
MflI RGATCY 1 cut(s) 456
MlsI TGGCCA 1 cut(s) 84
MluCI AATT 1 cut(s) 414
MluNI TGGCCA 1 cut(s) 84
MnlI CCTC 4 cut(s) 43, 65, 289, 384
Mox20I TGGCCA 1 cut(s) 84
MscI TGGCCA 1 cut(s) 84
MseI TTAA 2 cut(s) 261, 333
Msp20I TGGCCA 1 cut(s) 84
MspA1I CMGCKG 1 cut(s) 364
Mva1269I GAATGC 2 cut(s) 113, 307
MwoI GCNNNNNNNGC 1 cut(s) 146
NdeII GATC 2 cut(s) 163, 456
NlaIII CATG 1 cut(s) 135
NlaIV GGNNCC 1 cut(s) 458
NmuCI GTSAC 2 cut(s) 170, 353
PctI GAATGC 2 cut(s) 113, 307
PfeI GAWTC 2 cut(s) 11, 481
PkrI GCNGC 2 cut(s) 235, 366
PshBI ATTAAT 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 458
PsuI RGATCY 1 cut(s) 456
SaqAI TTAA 2 cut(s) 261, 333
SatI GCNGC 2 cut(s) 234, 365
Sau3AI GATC 2 cut(s) 163, 456
SetI ASST 8 cut(s) 70, 96, 103, 151, 217, 252, 373, 395
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
Sse9I AATT 1 cut(s) 414
SsiI CCGC 2 cut(s) 111, 362
SspMI CTAG 2 cut(s) 278, 503
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 1 cut(s) 193
TasI AATT 1 cut(s) 414
TfiI GAWTC 2 cut(s) 11, 481
Tru1I TTAA 2 cut(s) 261, 333
Tru9I TTAA 2 cut(s) 261, 333
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 2 cut(s) 170, 353
TseI GCWGC 2 cut(s) 233, 364
Tsp45I GTSAC 2 cut(s) 170, 353
TspDTI ATGAA 1 cut(s) 426
TspRI CASTG 1 cut(s) 244
VspI ATTAAT 1 cut(s) 261
XspI CTAG 2 cut(s) 278, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.