Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0010547

Physical Location & Seq

Genomic Coordinates Forward (+)

62573889 .. 62590817

Gene Structure 16929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG391300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGACCATCACAGCCGTGTCGTTCTTCGCCGCGCCCAACAGCGTCCGCCTTGTTCCGTTTGGGTCGCCGCACACTCGCAGGGCATCAGTAGAAAAAGTCGTTAGTGAAGACAAAAATTTTGTGAGAAAGAAGTGCACTAAGGGTGGCCAACCGTTGCCACCACCCTATGACCATTACCTGAAGATCATTACAAAAAACTATGGTATCGAATTTTCTGTCAATGACGTCGCAATAGATGTGGGGATCGAAACTCAGGAAGAGTTCAAGGAGAAAGATGGAAAACAACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

96

Amino Acids

10.78

Weight (kDa)

8.73

Isoelectric Point (pI)

53.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g31470 FvH4_3g31480
rosa_laevigata	RLG00000035198 RLG00000035199
rosa_multiflora	Rmu_sc0000367.1_g000023 Rmu_sc0000367.1_g000029 Rmu_sc0000367.1_g000031 Rmu_sc0000367.1_g000032 Rmu_sc0000367.1_g000033
rosa_roxburghii	Rroxscaffold_1G00022400 Rroxscaffold_1G00022420
rosa_rugosa	Rorug05G0312200
rosa_samantha	Rh5AG380200 Rh5BG391200 Rh5BG391300 Rh5CG415100 Rh5CG415200 Rh5DG405900 Rh5DG406000
rosa_wichuraiana	Rw5G035780 Rw5G035790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	228
AccII	CGCG	1 cut(s)	32
AciI	CCGC	3 cut(s)	30, 46, 68
AclWI	GGATC	1 cut(s)	251
AcoI	YGGCCR	1 cut(s)	145
AcsI	RAATTY	2 cut(s)	115, 209
AcuI	CTGAAG	1 cut(s)	200
AcyI	GRCGYC	1 cut(s)	225
AgsI	TTSAA	1 cut(s)	265
AleI	CACNNNNGTG	1 cut(s)	14
Alw21I	GWGCWC	1 cut(s)	137
Alw44I	GTGCAC	1 cut(s)	133
AlwI	GGATC	1 cut(s)	251
AoxI	GGCC	1 cut(s)	145
ApaLI	GTGCAC	1 cut(s)	133
ApoI	RAATTY	2 cut(s)	115, 209
ArsI	GACNNNNNNTTYG	4 cut(s)	101, 133, 201, 233
AspLEI	GCGC	1 cut(s)	34
BaeGI	GKGCMC	1 cut(s)	137
BaeI	ACNNNNGTAYC	2 cut(s)	187, 220
BalI	TGGCCA	1 cut(s)	147
BbsI	GAAGAC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	137
BccI	CCATC	2 cut(s)	14, 269
BisI	GCNGC	2 cut(s)	30, 68
BlsI	GCNGC	2 cut(s)	31, 69
BmsI	GCATC	1 cut(s)	92
BpiI	GAAGAC	1 cut(s)	114
BsaHI	GRCGYC	1 cut(s)	225
BseMII	CTCAG	1 cut(s)	266
BseSI	GKGCMC	1 cut(s)	137
Bsh1236I	CGCG	1 cut(s)	32
BshFI	GGCC	1 cut(s)	147
BsiHKAI	GWGCWC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	137
Bsp143I	GATC	2 cut(s)	183, 243
BspACI	CCGC	3 cut(s)	30, 46, 68
BspANI	GGCC	1 cut(s)	147
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	1 cut(s)	32
BspPI	GGATC	1 cut(s)	251
BssMI	GATC	2 cut(s)	183, 243
BssNI	GRCGYC	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	153
Bst6I	CTCTTC	1 cut(s)	252
BstACI	GRCGYC	1 cut(s)	225
BstDEI	CTNAG	2 cut(s)	138, 252
BstFNI	CGCG	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	2 cut(s)	186, 246
BstMBI	GATC	2 cut(s)	183, 243
BstSLI	GKGCMC	1 cut(s)	137
BstUI	CGCG	1 cut(s)	32
BstV2I	GAAGAC	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	147
CfoI	GCGC	1 cut(s)	34
CseI	GACGC	1 cut(s)	31
CspCI	CAANNNNNGTGG	2 cut(s)	219, 254
CviJI	RGCY	2 cut(s)	14, 147
CviKI_1	RGCY	2 cut(s)	14, 147
DdeI	CTNAG	2 cut(s)	138, 252
DpnI	GATC	2 cut(s)	185, 245
DpnII	GATC	2 cut(s)	183, 243
EaeI	YGGCCR	1 cut(s)	145
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
EciI	GGCGGA	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	200
FaiI	YATR	2 cut(s)	168, 201
Fnu4HI	GCNGC	2 cut(s)	30, 68
Fsp4HI	GCNGC	2 cut(s)	30, 68
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	2 cut(s)	30, 68
HaeIII	GGCC	1 cut(s)	147
HgaI	GACGC	1 cut(s)	31
HhaI	GCGC	1 cut(s)	34
Hin1I	GRCGYC	1 cut(s)	225
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188III	TCNNGA	1 cut(s)	254
Hpy8I	GTNNAC	1 cut(s)	135
Hpy99I	CGWCG	1 cut(s)	230
HpyCH4III	ACNGT	1 cut(s)	153
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	1 cut(s)	135
HpyF3I	CTNAG	2 cut(s)	138, 252
HpySE526I	ACGT	1 cut(s)	225
Hsp92I	GRCGYC	1 cut(s)	225
HspAI	GCGC	1 cut(s)	32
Kzo9I	GATC	2 cut(s)	183, 243
LpnPI	CCDG	3 cut(s)	64, 191, 239
LweI	GCATC	1 cut(s)	92
MaeII	ACGT	1 cut(s)	225
MalI	GATC	2 cut(s)	185, 245
MboI	GATC	2 cut(s)	183, 243
MboII	GAAGA	4 cut(s)	16, 119, 193, 269
MhlI	GDGCHC	1 cut(s)	137
MlsI	TGGCCA	1 cut(s)	147
MluCI	AATT	2 cut(s)	115, 209
MluNI	TGGCCA	1 cut(s)	147
Mox20I	TGGCCA	1 cut(s)	147
MscI	TGGCCA	1 cut(s)	147
MslI	CAYNNNNRTG	1 cut(s)	14
Msp20I	TGGCCA	1 cut(s)	147
MvnI	CGCG	1 cut(s)	32
NdeII	GATC	2 cut(s)	183, 243
OliI	CACNNNNGTG	1 cut(s)	14
PkrI	GCNGC	2 cut(s)	31, 69
RseI	CAYNNNNRTG	1 cut(s)	14
SatI	GCNGC	2 cut(s)	30, 68
Sau3AI	GATC	2 cut(s)	183, 243
SduI	GDGCHC	1 cut(s)	137
SetI	ASST	2 cut(s)	180, 228
SfaNI	GCATC	1 cut(s)	92
SgeI	CNNG	8 cut(s)	28, 43, 62, 87, 91, 190, 266, 277
SmiMI	CAYNNNNRTG	1 cut(s)	14
Sse9I	AATT	2 cut(s)	115, 209
SsiI	CCGC	3 cut(s)	30, 46, 68
TaaI	ACNGT	1 cut(s)	153
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	2 cut(s)	207, 246
TasI	AATT	2 cut(s)	115, 209
TauI	GCSGC	2 cut(s)	32, 70
TspGWI	ACGGA	1 cut(s)	45
VneI	GTGCAC	1 cut(s)	133
XapI	RAATTY	2 cut(s)	115, 209
ZraI	GACGTC	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.