RLG00000035198
TCP Family

TCP family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0010547
Physical Location & Seq
Forward (+)
62699720 .. 62700969
1250 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035198

Sequence Viewer

Length: 558 bp
ATGGGAATAGAATCAAACTTTTCAACCAATGCCTCAAGCAGTAGAAATCAAGTCCTCCATGGCAAAGCTTCAACAACAGATGGCCACACAAAGGTTGAAGGTGGTGAATGCGGTATTATCTTGCCAAAGTCATGTGTTGCTCGTATCGCTCAACTCACTCATGATCTTGGTCACAGTACCAATGGTCAAACAATAGAGTGGCTCTTACAACAAGCTGAACCATTCATTATCGCTGCCACTGGGAAAAATGTCTCCCTGATAAATACGCCTTCAACTCTAGTTACTGTGGATTTGGAGGAGAATGCTGTTAGTCTTGAAGACAAAGATTTGGTTAAGAAGAAGCGCACTATAGGTGACCAACTGCTGCTACCGGCTTATGACTATTATTTGAGGTTGGTCACACAAAACTATGAAATTGCTGACTTTTCTGCCAATGATGTTGCAATAGATGTAGGGATCCAAACTCAAGAAGAAACCAAGAATCAAGATGGGGAAGAAAGACGTACTAGAATAGGTGGTAAGGGAGAGGAAGAGAGAAAATGTTCAAGAAGGCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

186

Amino Acids

20.39

Weight (kDa)

5.44

Isoelectric Point (pI)

46.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 24 - 145 2.2e-12 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 111
AclWI GGATC 2 cut(s) 451, 464
AcoI YGGCCR 1 cut(s) 82
AfaI GTAC 2 cut(s) 178, 505
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 6 cut(s) 24, 72, 98, 273, 317, 546
AluBI AGCT 2 cut(s) 68, 215
AluI AGCT 2 cut(s) 68, 215
Alw26I GTCTC 1 cut(s) 256
AlwI GGATC 2 cut(s) 451, 464
AoxI GGCC 1 cut(s) 82
ApeKI GCWGC 2 cut(s) 233, 364
Asp700I GAANNNNTTC 1 cut(s) 541
AspLEI GCGC 1 cut(s) 345
AsuHPI GGTGA 2 cut(s) 116, 365
BalI TGGCCA 1 cut(s) 84
BamHI GGATCC 1 cut(s) 456
BbsI GAAGAC 1 cut(s) 324
BbvI GCAGC 2 cut(s) 220, 351
BccI CCATC 2 cut(s) 74, 482
BcoDI GTCTC 1 cut(s) 256
BfaI CTAG 2 cut(s) 278, 507
BfmI CTRYAG 1 cut(s) 348
BisI GCNGC 2 cut(s) 234, 365
BlsI GCNGC 2 cut(s) 235, 366
BmiI GGNNCC 1 cut(s) 458
BmrI ACTGGG 1 cut(s) 249
BmuI ACTGGG 1 cut(s) 249
BpiI GAAGAC 1 cut(s) 324
BpuEI CTTGAG 2 cut(s) 19, 450
BsaJI CCNNGG 1 cut(s) 58
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse118I RCCGGY 1 cut(s) 370
Bse1I ACTGG 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 91
BseNI ACTGG 1 cut(s) 244
BseRI GAGGAG 1 cut(s) 311
BseXI GCAGC 2 cut(s) 220, 351
BshFI GGCC 1 cut(s) 84
BsiSI CCGG 1 cut(s) 371
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 1 cut(s) 256
BsmI GAATGC 2 cut(s) 113, 307
BsnI GGCC 1 cut(s) 84
Bsp143I GATC 2 cut(s) 163, 456
Bsp19I CCATGG 1 cut(s) 58
BspACI CCGC 1 cut(s) 111
BspANI GGCC 1 cut(s) 84
BspHI TCATGA 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 458
BspPI GGATC 2 cut(s) 451, 464
BsrFI RCCGGY 1 cut(s) 370
BsrI ACTGG 1 cut(s) 244
BssAI RCCGGY 1 cut(s) 370
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 2 cut(s) 163, 456
BssT1I CCWWGG 1 cut(s) 58
Bst4CI ACNGT 2 cut(s) 176, 286
Bst6I CTCTTC 1 cut(s) 525
BstDSI CCRYGG 1 cut(s) 58
BstEII GGTNACC 1 cut(s) 353
BstHHI GCGC 1 cut(s) 345
BstKTI GATC 2 cut(s) 166, 459
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 2 cut(s) 163, 456
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstPI GGTNACC 1 cut(s) 353
BstSFI CTRYAG 1 cut(s) 348
BstV1I GCAGC 2 cut(s) 220, 351
BstV2I GAAGAC 1 cut(s) 324
BstX2I RGATCY 1 cut(s) 456
BstYI RGATCY 1 cut(s) 456
BsuRI GGCC 1 cut(s) 84
BtgI CCRYGG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 237
CciI TCATGA 1 cut(s) 160
CfoI GCGC 1 cut(s) 345
Cfr10I RCCGGY 1 cut(s) 370
Csp6I GTAC 2 cut(s) 177, 504
CviAII CATG 3 cut(s) 59, 132, 161
CviJI RGCY 5 cut(s) 68, 84, 202, 215, 374
CviKI_1 RGCY 5 cut(s) 68, 84, 202, 215, 374
CviQI GTAC 2 cut(s) 177, 504
DpnI GATC 2 cut(s) 165, 458
DpnII GATC 2 cut(s) 163, 456
EaeI YGGCCR 1 cut(s) 82
Eam1104I CTCTTC 1 cut(s) 525
EarI CTCTTC 1 cut(s) 525
Eco130I CCWWGG 1 cut(s) 58
Eco91I GGTNACC 1 cut(s) 353
EcoO65I GGTNACC 1 cut(s) 353
EcoT14I CCWWGG 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 3 cut(s) 62, 135, 164
FaiI YATR 6 cut(s) 60, 133, 162, 350, 378, 411
FatI CATG 3 cut(s) 58, 131, 160
Fnu4HI GCNGC 2 cut(s) 234, 365
Fsp4HI GCNGC 2 cut(s) 234, 365
FspBI CTAG 2 cut(s) 278, 507
GlaI GCGC 1 cut(s) 344
GluI GCNGC 2 cut(s) 234, 365
HaeIII GGCC 1 cut(s) 84
HapII CCGG 1 cut(s) 371
HhaI GCGC 1 cut(s) 345
Hin1II CATG 3 cut(s) 62, 135, 164
Hin6I GCGC 1 cut(s) 343
HinP1I GCGC 1 cut(s) 343
HindIII AAGCTT 1 cut(s) 66
HinfI GANTC 2 cut(s) 11, 481
HpaII CCGG 1 cut(s) 371
HphI GGTGA 2 cut(s) 116, 365
Hpy188III TCNNGA 5 cut(s) 161, 314, 467, 485, 546
HpyAV CCTTC 3 cut(s) 92, 279, 543
HpyCH4III ACNGT 2 cut(s) 176, 286
HpyCH4IV ACGT 1 cut(s) 502
HpyCH4V TGCA 1 cut(s) 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpySE526I ACGT 1 cut(s) 502
Hsp92II CATG 3 cut(s) 62, 135, 164
HspAI GCGC 1 cut(s) 343
Kzo9I GATC 2 cut(s) 163, 456
LpnPI CCDG 3 cut(s) 225, 269, 384
Lsp1109I GCAGC 2 cut(s) 220, 351
MaeI CTAG 2 cut(s) 278, 507
MaeII ACGT 1 cut(s) 502
MaeIII GTNAC 4 cut(s) 170, 280, 353, 397
MalI GATC 2 cut(s) 165, 458
MboI GATC 2 cut(s) 163, 456
MboII GAAGA 5 cut(s) 329, 349, 482, 506, 542
MflI RGATCY 1 cut(s) 456
MlsI TGGCCA 1 cut(s) 84
MluCI AATT 1 cut(s) 414
MluNI TGGCCA 1 cut(s) 84
MnlI CCTC 5 cut(s) 43, 65, 289, 384, 520
Mox20I TGGCCA 1 cut(s) 84
MroXI GAANNNNTTC 1 cut(s) 541
MscI TGGCCA 1 cut(s) 84
MseI TTAA 2 cut(s) 333, 556
Msp20I TGGCCA 1 cut(s) 84
MspI CCGG 1 cut(s) 371
Mva1269I GAATGC 2 cut(s) 113, 307
MwoI GCNNNNNNNGC 1 cut(s) 146
NcoI CCATGG 1 cut(s) 58
NdeII GATC 2 cut(s) 163, 456
NlaIII CATG 3 cut(s) 62, 135, 164
NlaIV GGNNCC 1 cut(s) 458
NmuCI GTSAC 3 cut(s) 170, 353, 397
PagI TCATGA 1 cut(s) 160
PctI GAATGC 2 cut(s) 113, 307
PdmI GAANNNNTTC 1 cut(s) 541
PfeI GAWTC 2 cut(s) 11, 481
PkrI GCNGC 2 cut(s) 235, 366
PspEI GGTNACC 1 cut(s) 353
PspN4I GGNNCC 1 cut(s) 458
PsuI RGATCY 1 cut(s) 456
RsaI GTAC 2 cut(s) 178, 505
RsaNI GTAC 2 cut(s) 177, 504
SaqAI TTAA 2 cut(s) 333, 556
SatI GCNGC 2 cut(s) 234, 365
Sau3AI GATC 2 cut(s) 163, 456
SetI ASST 8 cut(s) 70, 96, 103, 217, 355, 395, 505, 517
SfcI CTRYAG 1 cut(s) 348
SmlI CTYRAG 2 cut(s) 34, 465
SmoI CTYRAG 2 cut(s) 34, 465
Sse9I AATT 1 cut(s) 414
SsiI CCGC 1 cut(s) 111
SspMI CTAG 2 cut(s) 278, 507
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 2 cut(s) 176, 286
TaiI ACGT 1 cut(s) 505
TasI AATT 1 cut(s) 414
TfiI GAWTC 2 cut(s) 11, 481
Tru1I TTAA 2 cut(s) 333, 556
Tru9I TTAA 2 cut(s) 333, 556
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 3 cut(s) 170, 353, 397
TseI GCWGC 2 cut(s) 233, 364
Tsp45I GTSAC 3 cut(s) 170, 353, 397
TspDTI ATGAA 2 cut(s) 214, 426
TspRI CASTG 1 cut(s) 244
XmnI GAANNNNTTC 1 cut(s) 541
XspI CTAG 2 cut(s) 278, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.