RLG00000035199
TCP Family

TCP family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0010547
Physical Location & Seq
Forward (+)
62715514 .. 62716011
498 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035199

Sequence Viewer

Length: 498 bp
ATGGGAACAAATCCAAGTATCTCAACAAATGCCTCAAGTAGCAGAAATAAGGTCCTTGGCAAAGCTTTATCAGAAGACAACAATACAAAAGTAGATGGTCGTGGCCGTCGTATTCGCCTACCACCCATTTGTGCTGCTCGGATCTTTCAGCTTACTCGTGAGCTTGGTCACAAAACCGATGGCCAGACGATAGAGTGGCTCCTAAAACAAGCTGAACCATCTATTCTCGCTGTCACAGGTAACGGTGTCACTCCCAGTAACACTCTTTCGACTCTAGCTTCTGTGAATTTGCAGGCAGAAAAAGTCGTTAGTGAAGACAAAAATTTTGTGAGAAAGAAGTGCACTAAGGGTGCCCAACCGTTGCCACCACCCTATGACCATTACCTGAAGATCATTACAAAAAACTATGGTATCGAATTTTCTGTCAATGACGTCGCAATAGATGTGGGGATCGAAACTCAGGAAGGGTTCAAAGAGAAAGGTGGAAAACAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

166

Amino Acids

17.98

Weight (kDa)

9.25

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 26 - 111 5.7e-22 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 435
AccB1I GGYRCC 1 cut(s) 350
AclWI GGATC 2 cut(s) 149, 458
AcoI YGGCCR 2 cut(s) 103, 181
AcsI RAATTY 3 cut(s) 286, 322, 416
AcuI CTGAAG 1 cut(s) 407
AcyI GRCGYC 1 cut(s) 432
AgsI TTSAA 1 cut(s) 472
AluBI AGCT 5 cut(s) 65, 151, 163, 212, 278
AluI AGCT 5 cut(s) 65, 151, 163, 212, 278
Alw21I GWGCWC 1 cut(s) 344
Alw44I GTGCAC 1 cut(s) 340
AlwI GGATC 2 cut(s) 149, 458
AoxI GGCC 2 cut(s) 103, 181
ApaLI GTGCAC 1 cut(s) 340
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 3 cut(s) 286, 322, 416
ArsI GACNNNNNNTTYG 4 cut(s) 308, 340, 408, 440
AspS9I GGNCC 1 cut(s) 52
AvaII GGWCC 1 cut(s) 52
BaeGI GKGCMC 2 cut(s) 344, 355
BaeI ACNNNNGTAYC 2 cut(s) 394, 427
BalI TGGCCA 1 cut(s) 183
BanI GGYRCC 1 cut(s) 350
BauI CACGAG 1 cut(s) 156
BbsI GAAGAC 2 cut(s) 81, 321
Bbv12I GWGCWC 1 cut(s) 344
BbvI GCAGC 1 cut(s) 121
BccI CCATC 3 cut(s) 89, 173, 226
BceAI ACGGC 1 cut(s) 90
BfaI CTAG 1 cut(s) 275
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 2 cut(s) 200, 352
BmrI ACTGGG 1 cut(s) 249
BmuI ACTGGG 1 cut(s) 249
BpiI GAAGAC 2 cut(s) 81, 321
BpuEI CTTGAG 1 cut(s) 19
BsaHI GRCGYC 1 cut(s) 432
BsaJI CCNNGG 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 55
BseMII CTCAG 1 cut(s) 473
BseNI ACTGG 1 cut(s) 255
BseSI GKGCMC 2 cut(s) 344, 355
BseXI GCAGC 1 cut(s) 121
BshFI GGCC 2 cut(s) 105, 183
BshNI GGYRCC 1 cut(s) 350
BsiHKAI GWGCWC 1 cut(s) 344
BsnI GGCC 2 cut(s) 105, 183
Bsp1286I GDGCHC 2 cut(s) 344, 355
Bsp143I GATC 3 cut(s) 141, 390, 450
BspANI GGCC 2 cut(s) 105, 183
BspCNI CTCAG 1 cut(s) 472
BspLI GGNNCC 2 cut(s) 200, 352
BspPI GGATC 2 cut(s) 149, 458
BspT107I GGYRCC 1 cut(s) 350
BsrI ACTGG 1 cut(s) 255
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 3 cut(s) 141, 390, 450
BssNI GRCGYC 1 cut(s) 432
BssSI CACGAG 1 cut(s) 156
BssT1I CCWWGG 1 cut(s) 55
Bst2BI CACGAG 1 cut(s) 156
Bst4CI ACNGT 2 cut(s) 245, 360
BstACI GRCGYC 1 cut(s) 432
BstC8I GCNNGC 1 cut(s) 294
BstDEI CTNAG 2 cut(s) 345, 459
BstKTI GATC 3 cut(s) 144, 393, 453
BstMBI GATC 3 cut(s) 141, 390, 450
BstSLI GKGCMC 2 cut(s) 344, 355
BstV1I GCAGC 1 cut(s) 121
BstV2I GAAGAC 2 cut(s) 81, 321
BstX2I RGATCY 1 cut(s) 141
BstYI RGATCY 1 cut(s) 141
BsuRI GGCC 2 cut(s) 105, 183
Cac8I GCNNGC 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 52
CspCI CAANNNNNGTGG 2 cut(s) 426, 461
CviJI RGCY 8 cut(s) 65, 105, 151, 163, 183, 199, 212, 278
CviKI_1 RGCY 8 cut(s) 65, 105, 151, 163, 183, 199, 212, 278
DdeI CTNAG 2 cut(s) 345, 459
DpnI GATC 3 cut(s) 143, 392, 452
DpnII GATC 3 cut(s) 141, 390, 450
EaeI YGGCCR 2 cut(s) 103, 181
Eco130I CCWWGG 1 cut(s) 55
Eco47I GGWCC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 407
EcoO109I RGGNCCY 1 cut(s) 52
EcoT14I CCWWGG 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 55
FaiI YATR 2 cut(s) 375, 408
Fnu4HI GCNGC 1 cut(s) 135
Fsp4HI GCNGC 1 cut(s) 135
FspBI CTAG 1 cut(s) 275
GluI GCNGC 1 cut(s) 135
HaeIII GGCC 2 cut(s) 105, 183
Hin1I GRCGYC 1 cut(s) 432
HindIII AAGCTT 1 cut(s) 63
HinfI GANTC 1 cut(s) 271
Hpy166II GTNNAC 1 cut(s) 342
Hpy188I TCNGA 2 cut(s) 73, 141
Hpy188III TCNNGA 2 cut(s) 158, 461
Hpy8I GTNNAC 1 cut(s) 342
Hpy99I CGWCG 2 cut(s) 111, 437
HpyAV CCTTC 1 cut(s) 458
HpyCH4III ACNGT 2 cut(s) 245, 360
HpyCH4IV ACGT 1 cut(s) 432
HpyCH4V TGCA 2 cut(s) 292, 342
HpyF3I CTNAG 2 cut(s) 345, 459
HpySE526I ACGT 1 cut(s) 432
Hsp92I GRCGYC 1 cut(s) 432
Kzo9I GATC 3 cut(s) 141, 390, 450
LmnI GCTCC 1 cut(s) 204
LpnPI CCDG 6 cut(s) 197, 222, 268, 278, 398, 446
Lsp1109I GCAGC 1 cut(s) 121
MaeI CTAG 1 cut(s) 275
MaeII ACGT 1 cut(s) 432
MaeIII GTNAC 5 cut(s) 167, 232, 239, 247, 257
MalI GATC 3 cut(s) 143, 392, 452
MboI GATC 3 cut(s) 141, 390, 450
MboII GAAGA 3 cut(s) 86, 326, 400
MflI RGATCY 1 cut(s) 141
MhlI GDGCHC 2 cut(s) 344, 355
MlsI TGGCCA 1 cut(s) 183
MluCI AATT 3 cut(s) 286, 322, 416
MluNI TGGCCA 1 cut(s) 183
MlyI GAGTC 1 cut(s) 265
MnlI CCTC 1 cut(s) 43
Mox20I TGGCCA 1 cut(s) 183
MscI TGGCCA 1 cut(s) 183
Msp20I TGGCCA 1 cut(s) 183
NdeII GATC 3 cut(s) 141, 390, 450
NlaIV GGNNCC 2 cut(s) 200, 352
NmuCI GTSAC 3 cut(s) 167, 232, 247
PcsI WCGNNNNNNNCGW 1 cut(s) 106
PkrI GCNGC 1 cut(s) 136
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
PpuMI RGGWCCY 1 cut(s) 52
Psp5II RGGWCCY 1 cut(s) 52
PspN4I GGNNCC 2 cut(s) 200, 352
PspPI GGNCC 1 cut(s) 52
PspPPI RGGWCCY 1 cut(s) 52
PsuI RGATCY 1 cut(s) 141
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 3 cut(s) 141, 390, 450
Sau96I GGNCC 1 cut(s) 52
SchI GAGTC 1 cut(s) 265
SduI GDGCHC 2 cut(s) 344, 355
SinI GGWCC 1 cut(s) 52
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
Sse9I AATT 3 cut(s) 286, 322, 416
SspMI CTAG 1 cut(s) 275
StyI CCWWGG 1 cut(s) 55
TaaI ACNGT 2 cut(s) 245, 360
TaiI ACGT 1 cut(s) 435
TaqI TCGA 3 cut(s) 269, 414, 453
TasI AATT 3 cut(s) 286, 322, 416
TseFI GTSAC 3 cut(s) 167, 232, 247
TseI GCWGC 1 cut(s) 134
Tsp45I GTSAC 3 cut(s) 167, 232, 247
VneI GTGCAC 1 cut(s) 340
VpaK11BI GGWCC 1 cut(s) 52
XapI RAATTY 3 cut(s) 286, 322, 416
XspI CTAG 1 cut(s) 275
ZraI GACGTC 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.