Rroxscaffold_1G00022400
TCP Family

TCP family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0010547
Physical Location & Seq
Reverse (-)
27680231 .. 27681245
1015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00022400.1

Sequence Viewer

Length: 669 bp
ATGACCATCGCAGCCGTGTCTTTCTTCGCCGCGCCCAATAGTGTCCGCCTTGTTCCGTTTGGGTCGCCGCACACTCGCAGGGCATCAGTTGCCCTTAAGCCTGAACTCTTTATCACCAACCCCAAGCAAATTCTGGAGCACTCTTATGTGCTAATAATCTATTTGCTTACAATGGGAACAAATCCAAGTATCTCAACAAATGCCTCAAGTAGCAGAAATAAGGTCCTTGGCAAAGCTTCATCAGAAGACAACAATACAAAGGTTGATGGTCATGGCCGTCGTATTCGCCTGCCACCCATTTGTGCTGCTCGGATCTTTCAGCTTACTCGTGAGCTTGGTCACAAAACCGATGGCCAGACGATAGAGTGGCTCCTAAAACAAGCTGAACCATCTATTCTCGCTGTCACAGGTAACGGTGTCACTCCCAGTAACACTCTTTCGACTCTAGCTTCTGTGAATTTGCAGGCAGAAAAAGTCGTTAGTGAAGACAAAAATTTTGTGAGAAAGAAGTGCACTAAGGGTGGCCAACCGTTGCCACCACCCTATGACCATTACCTGAAGATCATTACAAAAAACTATGGTATCGAATTTTCTGTCAATGACGTCGCAATAGATGTGGGGATCGAAACTCAGGAAGAGTTCAAGGAGAAAGATGGAAAACAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

222

Amino Acids

24.37

Weight (kDa)

9.17

Isoelectric Point (pI)

43.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 81 - 165 1.8e-20 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 606
AccII CGCG 1 cut(s) 32
AciI CCGC 3 cut(s) 30, 46, 68
AclWI GGATC 2 cut(s) 320, 629
AcoI YGGCCR 3 cut(s) 274, 352, 523
AcsI RAATTY 4 cut(s) 129, 457, 493, 587
AcuI CTGAAG 1 cut(s) 578
AcyI GRCGYC 1 cut(s) 603
AflII CTTAAG 1 cut(s) 95
AgsI TTSAA 1 cut(s) 643
AluBI AGCT 5 cut(s) 236, 322, 334, 383, 449
AluI AGCT 5 cut(s) 236, 322, 334, 383, 449
Alw21I GWGCWC 2 cut(s) 141, 515
Alw44I GTGCAC 1 cut(s) 511
AlwI GGATC 2 cut(s) 320, 629
AoxI GGCC 3 cut(s) 274, 352, 523
ApaLI GTGCAC 1 cut(s) 511
ApeKI GCWGC 2 cut(s) 11, 305
ApoI RAATTY 4 cut(s) 129, 457, 493, 587
ArsI GACNNNNNNTTYG 4 cut(s) 479, 511, 579, 611
AspLEI GCGC 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 223
AsuHPI GGTGA 1 cut(s) 106
AvaII GGWCC 1 cut(s) 223
BaeGI GKGCMC 1 cut(s) 515
BaeI ACNNNNGTAYC 2 cut(s) 565, 598
BalI TGGCCA 2 cut(s) 354, 525
BauI CACGAG 1 cut(s) 327
BbsI GAAGAC 2 cut(s) 252, 492
Bbv12I GWGCWC 2 cut(s) 141, 515
BbvI GCAGC 2 cut(s) 23, 292
BccI CCATC 5 cut(s) 14, 260, 344, 397, 647
BceAI ACGGC 1 cut(s) 261
BfaI CTAG 1 cut(s) 446
BfrI CTTAAG 1 cut(s) 95
BisI GCNGC 4 cut(s) 12, 30, 68, 306
BlsI GCNGC 4 cut(s) 13, 31, 69, 307
Bme18I GGWCC 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 223
BmiI GGNNCC 1 cut(s) 371
BmrI ACTGGG 1 cut(s) 420
BmsI GCATC 1 cut(s) 92
BmuI ACTGGG 1 cut(s) 420
BpiI GAAGAC 2 cut(s) 252, 492
BpmI CTGGAG 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 190
BsaHI GRCGYC 1 cut(s) 603
BsaJI CCNNGG 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 426
BseDI CCNNGG 1 cut(s) 226
BseMII CTCAG 1 cut(s) 644
BseNI ACTGG 1 cut(s) 426
BseSI GKGCMC 1 cut(s) 515
BseXI GCAGC 2 cut(s) 23, 292
Bsh1236I CGCG 1 cut(s) 32
BshFI GGCC 3 cut(s) 276, 354, 525
BsiHKAI GWGCWC 2 cut(s) 141, 515
BsnI GGCC 3 cut(s) 276, 354, 525
Bsp1286I GDGCHC 2 cut(s) 141, 515
Bsp143I GATC 3 cut(s) 312, 561, 621
BspACI CCGC 3 cut(s) 30, 46, 68
BspANI GGCC 3 cut(s) 276, 354, 525
BspCNI CTCAG 1 cut(s) 643
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 1 cut(s) 371
BspPI GGATC 2 cut(s) 320, 629
BspTI CTTAAG 1 cut(s) 95
BsrI ACTGG 1 cut(s) 426
BssECI CCNNGG 1 cut(s) 226
BssMI GATC 3 cut(s) 312, 561, 621
BssNI GRCGYC 1 cut(s) 603
BssSI CACGAG 1 cut(s) 327
BssT1I CCWWGG 1 cut(s) 226
Bst2BI CACGAG 1 cut(s) 327
Bst4CI ACNGT 2 cut(s) 416, 531
Bst6I CTCTTC 1 cut(s) 630
BstACI GRCGYC 1 cut(s) 603
BstAFI CTTAAG 1 cut(s) 95
BstAPI GCANNNNNTGC 1 cut(s) 89
BstC8I GCNNGC 2 cut(s) 290, 465
BstDEI CTNAG 2 cut(s) 516, 630
BstFNI CGCG 1 cut(s) 32
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 3 cut(s) 315, 564, 624
BstMBI GATC 3 cut(s) 312, 561, 621
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstSLI GKGCMC 1 cut(s) 515
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 2 cut(s) 23, 292
BstV2I GAAGAC 2 cut(s) 252, 492
BstX2I RGATCY 1 cut(s) 312
BstYI RGATCY 1 cut(s) 312
BsuRI GGCC 3 cut(s) 276, 354, 525
Cac8I GCNNGC 2 cut(s) 290, 465
CfoI GCGC 1 cut(s) 34
Cfr13I GGNCC 1 cut(s) 223
CspCI CAANNNNNGTGG 2 cut(s) 597, 632
CviAII CATG 1 cut(s) 272
DdeI CTNAG 2 cut(s) 516, 630
DpnI GATC 3 cut(s) 314, 563, 623
DpnII GATC 3 cut(s) 312, 561, 621
EaeI YGGCCR 3 cut(s) 274, 352, 523
Eam1104I CTCTTC 1 cut(s) 630
EarI CTCTTC 1 cut(s) 630
EciI GGCGGA 1 cut(s) 35
Eco130I CCWWGG 1 cut(s) 226
Eco47I GGWCC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 578
EcoO109I RGGNCCY 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 226
ErhI CCWWGG 1 cut(s) 226
FaeI CATG 1 cut(s) 275
FaiI YATR 4 cut(s) 147, 273, 546, 579
FatI CATG 1 cut(s) 271
Fnu4HI GCNGC 4 cut(s) 12, 30, 68, 306
Fsp4HI GCNGC 4 cut(s) 12, 30, 68, 306
FspBI CTAG 1 cut(s) 446
GlaI GCGC 1 cut(s) 33
GluI GCNGC 4 cut(s) 12, 30, 68, 306
GsuI CTGGAG 1 cut(s) 155
HaeIII GGCC 3 cut(s) 276, 354, 525
HhaI GCGC 1 cut(s) 34
Hin1I GRCGYC 1 cut(s) 603
Hin1II CATG 1 cut(s) 275
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HindIII AAGCTT 1 cut(s) 234
HinfI GANTC 1 cut(s) 442
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 513
Hpy188I TCNGA 2 cut(s) 244, 312
Hpy188III TCNNGA 3 cut(s) 134, 329, 632
Hpy8I GTNNAC 1 cut(s) 513
Hpy99I CGWCG 2 cut(s) 282, 608
HpyCH4III ACNGT 2 cut(s) 416, 531
HpyCH4IV ACGT 1 cut(s) 603
HpyCH4V TGCA 2 cut(s) 463, 513
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 2 cut(s) 516, 630
HpySE526I ACGT 1 cut(s) 603
Hsp92I GRCGYC 1 cut(s) 603
Hsp92II CATG 1 cut(s) 275
HspAI GCGC 1 cut(s) 32
Kzo9I GATC 3 cut(s) 312, 561, 621
LmnI GCTCC 2 cut(s) 136, 375
Lsp1109I GCAGC 2 cut(s) 23, 292
LweI GCATC 1 cut(s) 92
MaeI CTAG 1 cut(s) 446
MaeII ACGT 1 cut(s) 603
MaeIII GTNAC 5 cut(s) 338, 403, 410, 418, 428
MalI GATC 3 cut(s) 314, 563, 623
MboI GATC 3 cut(s) 312, 561, 621
MboII GAAGA 5 cut(s) 16, 257, 497, 571, 647
MflI RGATCY 1 cut(s) 312
MhlI GDGCHC 2 cut(s) 141, 515
MlsI TGGCCA 2 cut(s) 354, 525
MluCI AATT 4 cut(s) 129, 457, 493, 587
MluNI TGGCCA 2 cut(s) 354, 525
MlyI GAGTC 1 cut(s) 436
MnlI CCTC 1 cut(s) 214
Mox20I TGGCCA 2 cut(s) 354, 525
MscI TGGCCA 2 cut(s) 354, 525
MseI TTAA 1 cut(s) 96
MslI CAYNNNNRTG 1 cut(s) 144
Msp20I TGGCCA 2 cut(s) 354, 525
MspCI CTTAAG 1 cut(s) 95
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 3 cut(s) 312, 561, 621
NlaIII CATG 1 cut(s) 275
NlaIV GGNNCC 1 cut(s) 371
NmuCI GTSAC 3 cut(s) 338, 403, 418
PkrI GCNGC 4 cut(s) 13, 31, 69, 307
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
PpuMI RGGWCCY 1 cut(s) 223
Psp5II RGGWCCY 1 cut(s) 223
PspN4I GGNNCC 1 cut(s) 371
PspPI GGNCC 1 cut(s) 223
PspPPI RGGWCCY 1 cut(s) 223
PsuI RGATCY 1 cut(s) 312
RseI CAYNNNNRTG 1 cut(s) 144
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 4 cut(s) 12, 30, 68, 306
Sau3AI GATC 3 cut(s) 312, 561, 621
Sau96I GGNCC 1 cut(s) 223
SchI GAGTC 1 cut(s) 436
SduI GDGCHC 2 cut(s) 141, 515
SfaNI GCATC 1 cut(s) 92
SinI GGWCC 1 cut(s) 223
SmiMI CAYNNNNRTG 1 cut(s) 144
SmlI CTYRAG 2 cut(s) 95, 205
SmoI CTYRAG 2 cut(s) 95, 205
Sse9I AATT 4 cut(s) 129, 457, 493, 587
SsiI CCGC 3 cut(s) 30, 46, 68
SspMI CTAG 1 cut(s) 446
StyI CCWWGG 1 cut(s) 226
TaaI ACNGT 2 cut(s) 416, 531
TaiI ACGT 1 cut(s) 606
TaqI TCGA 3 cut(s) 440, 585, 624
TasI AATT 4 cut(s) 129, 457, 493, 587
TauI GCSGC 2 cut(s) 32, 70
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TseFI GTSAC 3 cut(s) 338, 403, 418
TseI GCWGC 2 cut(s) 11, 305
Tsp45I GTSAC 3 cut(s) 338, 403, 418
TspDTI ATGAA 1 cut(s) 228
TspGWI ACGGA 1 cut(s) 45
Vha464I CTTAAG 1 cut(s) 95
VneI GTGCAC 1 cut(s) 511
VpaK11BI GGWCC 1 cut(s) 223
XapI RAATTY 4 cut(s) 129, 457, 493, 587
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
XspI CTAG 1 cut(s) 446
ZraI GACGTC 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.