FvH4_3g31620

Kiwellin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012598
Physical Location & Seq
Reverse (-)
25903859 .. 25904364
506 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g31620.t1

Sequence Viewer

Length: 306 bp
ATGTTTGATGCTTTGAATTGGTTTTCTAGAGCTGCAATGAGGGAGAGGATTGTGGCACTTTCTACTAAGTGGTTTGGTAATAGATCGAGATGTGGGAAGATGATAAGAATCACAACAAGTAGTAATGGGAAGACTACGACTGCGAAAGTGGTGGACGAATGTGATTCACGTGCTGGGTGTGATAAGGAGCATGCAGGTCAACCGCCGTGTAGGAATAATATCGTGGATGGGTCTACTGCTGTGTGGAAGGCTTTGGGACTTGATCAAGATGAAGGTGTTCTTCCGGTGACTTTGTCCATGGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.05

Weight (kDa)

8.84

Isoelectric Point (pI)

38.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 15 - 99 2e-32 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 185
AccI GTMKAC 1 cut(s) 233
AciI CCGC 1 cut(s) 203
AcvI CACGTG 1 cut(s) 170
AgsI TTSAA 1 cut(s) 16
AluBI AGCT 1 cut(s) 32
AluI AGCT 1 cut(s) 32
ApeKI GCWGC 1 cut(s) 32
Asp700I GAANNNNTTC 1 cut(s) 276
AsuHPI GGTGA 1 cut(s) 298
BbrPI CACGTG 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 137
BbvI GCAGC 1 cut(s) 19
BccI CCATC 1 cut(s) 221
BceAI ACGGC 1 cut(s) 190
BclI TGATCA 1 cut(s) 262
BfaI CTAG 1 cut(s) 27
BfuAI ACCTGC 1 cut(s) 185
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
BpiI GAAGAC 1 cut(s) 137
BsaAI YACGTR 1 cut(s) 170
BsaBI GATNNNNATC 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 297
BsaWI WCCGGW 1 cut(s) 283
Bse3DI GCAATG 1 cut(s) 42
Bse8I GATNNNNATC 1 cut(s) 107
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 1 cut(s) 232
BseJI GATNNNNATC 1 cut(s) 107
BseMI GCAATG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 19
BseYI CCCAGC 1 cut(s) 173
BsiSI CCGG 1 cut(s) 284
BslFI GGGAC 1 cut(s) 270
BsmFI GGGAC 1 cut(s) 270
Bsp143I GATC 2 cut(s) 83, 262
Bsp19I CCATGG 1 cut(s) 297
BspACI CCGC 1 cut(s) 203
BspMI ACCTGC 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 2 cut(s) 83, 262
BssT1I CCWWGG 1 cut(s) 297
BstBAI YACGTR 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 1 cut(s) 66
BstDSI CCRYGG 1 cut(s) 297
BstF5I GGATG 1 cut(s) 232
BstKTI GATC 2 cut(s) 86, 265
BstMBI GATC 2 cut(s) 83, 262
BstNSI RCATGY 1 cut(s) 194
BstV1I GCAGC 1 cut(s) 19
BstV2I GAAGAC 1 cut(s) 137
BtgI CCRYGG 1 cut(s) 297
BtsCI GGATG 1 cut(s) 232
BveI ACCTGC 1 cut(s) 185
Cac8I GCNNGC 1 cut(s) 192
CviAII CATG 2 cut(s) 191, 298
CviJI RGCY 2 cut(s) 32, 251
CviKI_1 RGCY 2 cut(s) 32, 251
DdeI CTNAG 1 cut(s) 66
DpnI GATC 2 cut(s) 85, 264
DpnII GATC 2 cut(s) 83, 262
Eco130I CCWWGG 1 cut(s) 297
Eco72I CACGTG 1 cut(s) 170
EcoT14I CCWWGG 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 2 cut(s) 194, 301
FaiI YATR 2 cut(s) 192, 299
FalI AAGNNNNNCTT 2 cut(s) 264, 296
FaqI GGGAC 1 cut(s) 270
FatI CATG 2 cut(s) 190, 297
FbaI TGATCA 1 cut(s) 262
FblI GTMKAC 1 cut(s) 233
Fnu4HI GCNGC 1 cut(s) 33
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 1 cut(s) 33
FspBI CTAG 1 cut(s) 27
GluI GCNGC 1 cut(s) 33
GsaI CCCAGC 1 cut(s) 177
HapII CCGG 1 cut(s) 284
Hin1II CATG 2 cut(s) 194, 301
HincII GTYRAC 1 cut(s) 200
HindII GTYRAC 1 cut(s) 200
HinfI GANTC 2 cut(s) 108, 164
HpaII CCGG 1 cut(s) 284
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 3 cut(s) 154, 200, 234
Hpy188III TCNNGA 3 cut(s) 27, 87, 266
Hpy8I GTNNAC 3 cut(s) 154, 200, 234
HpyAV CCTTC 2 cut(s) 241, 266
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 2 cut(s) 35, 194
HpyF3I CTNAG 1 cut(s) 66
HpySE526I ACGT 1 cut(s) 169
Hsp92II CATG 2 cut(s) 194, 301
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 2 cut(s) 83, 262
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 3 cut(s) 159, 180, 297
Lsp1109I GCAGC 1 cut(s) 19
MaeI CTAG 1 cut(s) 27
MaeII ACGT 1 cut(s) 169
MaeIII GTNAC 1 cut(s) 286
MalI GATC 2 cut(s) 85, 264
MboI GATC 2 cut(s) 83, 262
MboII GAAGA 3 cut(s) 109, 142, 272
MluCI AATT 1 cut(s) 16
MnlI CCTC 2 cut(s) 33, 39
MroXI GAANNNNTTC 1 cut(s) 276
MspI CCGG 1 cut(s) 284
NcoI CCATGG 1 cut(s) 297
NdeII GATC 2 cut(s) 83, 262
NlaIII CATG 2 cut(s) 194, 301
NmuCI GTSAC 1 cut(s) 286
NspI RCATGY 1 cut(s) 194
PaeI GCATGC 1 cut(s) 194
PdmI GAANNNNTTC 1 cut(s) 276
PfeI GAWTC 2 cut(s) 108, 164
PflFI GACNNNGTC 1 cut(s) 292
PkrI GCNGC 1 cut(s) 34
PmaCI CACGTG 1 cut(s) 170
PmlI CACGTG 1 cut(s) 170
Ppu21I YACGTR 1 cut(s) 170
PspCI CACGTG 1 cut(s) 170
PspFI CCCAGC 1 cut(s) 173
PsyI GACNNNGTC 1 cut(s) 292
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 2 cut(s) 83, 262
SetI ASST 4 cut(s) 34, 172, 199, 277
SphI GCATGC 1 cut(s) 194
Sse9I AATT 1 cut(s) 16
SsiI CCGC 1 cut(s) 203
SspMI CTAG 1 cut(s) 27
StyI CCWWGG 1 cut(s) 297
TaiI ACGT 1 cut(s) 172
TaqI TCGA 1 cut(s) 86
TasI AATT 1 cut(s) 16
TfiI GAWTC 2 cut(s) 108, 164
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 1 cut(s) 32
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 1 cut(s) 285
Tth111I GACNNNGTC 1 cut(s) 292
XbaI TCTAGA 1 cut(s) 26
XceI RCATGY 1 cut(s) 194
XmiI GTMKAC 1 cut(s) 233
XmnI GAANNNNTTC 1 cut(s) 276
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.