FvH4_4g25200

Kiwellin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0012598
Physical Location & Seq
Forward (+)
27055142 .. 27055908
767 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g25200.t1

Sequence Viewer

Length: 510 bp
ATGGCAAGTTTTAAGTTGTTGGTTTCTCTATCCCTCGTCTTGGCTATCACCTCCCTTCCACTCCCATCAAGTGCGCAAACTTGTAATCCCTCCGGAACTCTGGTTTGCAAGGGAAAGTCGTACCCTAAATATACATGCTCGCCGCCTGTAACAGCAAAAACCGAAGCCTTGCTCACACTCAACGATTTCAGCGAAGGCGGTGACGGGGGAGGACCGTCATATTGTGACGGAAAATACCATTCAAACAGTGAGAAGGTTGTGGCACTTTCCACCGGGTGGTTTGATAATAAATCGAGATGTGGGAAGATGATCAGAATTACGGCAAGAAATGGAAAGACTACGACTGCAAAAGTTGTGGACGAATGCGATTCGCGTGCTGGGTGTGATAAAGAGCATGCAGGTCAGCCGCCGTGTAGGAACAATATCGTAGATGGGTCTGCAGCTGTGTGGAAAGCTTTGGGACTTGATCAAGATGAAGGTGTTGTTCCGGTGACTTGGTCCATGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

17.81

Weight (kDa)

8.09

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 24 - 167 1.1e-59 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 75
Acc36I ACCTGC 1 cut(s) 389
AccB7I CCANNNNNTGG 1 cut(s) 276
AccII CGCG 1 cut(s) 373
AccIII TCCGGA 1 cut(s) 92
AciI CCGC 3 cut(s) 143, 198, 407
AdeI CACNNNGTG 1 cut(s) 276
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 2 cut(s) 40, 276
AgsI TTSAA 1 cut(s) 243
AluBI AGCT 2 cut(s) 443, 455
AluI AGCT 2 cut(s) 443, 455
Aor13HI TCCGGA 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 440
AspLEI GCGC 1 cut(s) 76
AspS9I GGNCC 2 cut(s) 212, 498
AsuC2I CCSGG 1 cut(s) 274
AsuHPI GGTGA 3 cut(s) 40, 212, 502
AvaII GGWCC 2 cut(s) 212, 498
BbvI GCAGC 1 cut(s) 452
BccI CCATC 2 cut(s) 73, 425
BceAI ACGGC 2 cut(s) 336, 394
BcgI CGANNNNNNTGC 2 cut(s) 356, 390
BclI TGATCA 2 cut(s) 309, 466
BcnI CCSGG 1 cut(s) 274
BfmI CTRYAG 1 cut(s) 438
BfuAI ACCTGC 1 cut(s) 389
BisI GCNGC 3 cut(s) 143, 407, 441
BlsI GCNGC 3 cut(s) 144, 408, 442
Bme1390I CCNGG 1 cut(s) 274
Bme18I GGWCC 2 cut(s) 212, 498
BmgT120I GGNCC 2 cut(s) 212, 498
BmrFI CCNGG 1 cut(s) 274
BpuMI CCSGG 1 cut(s) 274
BsaJI CCNNGG 1 cut(s) 501
BsaWI WCCGGW 2 cut(s) 92, 487
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 276
BseAI TCCGGA 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 501
BseLI CCNNNNNNNGG 2 cut(s) 40, 276
BseXI GCAGC 1 cut(s) 452
BseYI CCCAGC 1 cut(s) 377
Bsh1236I CGCG 1 cut(s) 373
BsiSI CCGG 3 cut(s) 93, 273, 488
BslFI GGGAC 1 cut(s) 474
BslI CCNNNNNNNGG 2 cut(s) 40, 276
BsmFI GGGAC 1 cut(s) 474
BsmI GAATGC 1 cut(s) 368
Bsp13I TCCGGA 1 cut(s) 92
Bsp143I GATC 2 cut(s) 309, 466
Bsp19I CCATGG 1 cut(s) 501
BspACI CCGC 3 cut(s) 143, 198, 407
BspEI TCCGGA 1 cut(s) 92
BspFNI CGCG 1 cut(s) 373
BspMAI CTGCAG 1 cut(s) 442
BspMI ACCTGC 1 cut(s) 389
BssECI CCNNGG 1 cut(s) 501
BssMI GATC 2 cut(s) 309, 466
BssT1I CCWWGG 1 cut(s) 501
Bst4CI ACNGT 2 cut(s) 216, 248
BstC8I GCNNGC 3 cut(s) 140, 375, 396
BstDSI CCRYGG 1 cut(s) 501
BstFNI CGCG 1 cut(s) 373
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 2 cut(s) 312, 469
BstMBI GATC 2 cut(s) 309, 466
BstNSI RCATGY 2 cut(s) 138, 398
BstSCI CCNGG 1 cut(s) 272
BstSFI CTRYAG 1 cut(s) 438
BstUI CGCG 1 cut(s) 373
BstV1I GCAGC 1 cut(s) 452
BtgI CCRYGG 1 cut(s) 501
BtsIMutI CAGTG 1 cut(s) 253
BveI ACCTGC 1 cut(s) 389
Cac8I GCNNGC 3 cut(s) 140, 375, 396
CfoI GCGC 1 cut(s) 76
Cfr13I GGNCC 2 cut(s) 212, 498
Csp6I GTAC 1 cut(s) 121
CspCI CAANNNNNGTGG 2 cut(s) 336, 371
CviAII CATG 3 cut(s) 135, 395, 502
CviJI RGCY 5 cut(s) 44, 167, 406, 443, 455
CviKI_1 RGCY 5 cut(s) 44, 167, 406, 443, 455
CviQI GTAC 1 cut(s) 121
DpnI GATC 2 cut(s) 311, 468
DpnII GATC 2 cut(s) 309, 466
DraIII CACNNNGTG 1 cut(s) 276
Eco130I CCWWGG 1 cut(s) 501
Eco47I GGWCC 2 cut(s) 212, 498
EcoT14I CCWWGG 1 cut(s) 501
ErhI CCWWGG 1 cut(s) 501
FaeI CATG 3 cut(s) 138, 398, 505
FaiI YATR 6 cut(s) 132, 136, 220, 396, 503, 508
FaqI GGGAC 1 cut(s) 474
FatI CATG 3 cut(s) 134, 394, 501
FbaI TGATCA 2 cut(s) 309, 466
Fnu4HI GCNGC 3 cut(s) 143, 407, 441
Fsp4HI GCNGC 3 cut(s) 143, 407, 441
FspI TGCGCA 1 cut(s) 75
GlaI GCGC 1 cut(s) 75
GluI GCNGC 3 cut(s) 143, 407, 441
GsaI CCCAGC 1 cut(s) 381
HapII CCGG 3 cut(s) 93, 273, 488
HhaI GCGC 1 cut(s) 76
Hin1II CATG 3 cut(s) 138, 398, 505
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HindIII AAGCTT 1 cut(s) 453
HinfI GANTC 1 cut(s) 368
HpaII CCGG 3 cut(s) 93, 273, 488
HphI GGTGA 3 cut(s) 40, 212, 502
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 1 cut(s) 314
Hpy188III TCNNGA 3 cut(s) 93, 294, 470
Hpy8I GTNNAC 1 cut(s) 358
HpyAV CCTTC 4 cut(s) 65, 188, 247, 470
HpyCH4III ACNGT 2 cut(s) 216, 248
HpyCH4V TGCA 4 cut(s) 108, 347, 398, 440
Hsp92II CATG 3 cut(s) 138, 398, 505
HspAI GCGC 1 cut(s) 74
Kpn2I TCCGGA 1 cut(s) 92
Ksp22I TGATCA 2 cut(s) 309, 466
Kzo9I GATC 2 cut(s) 309, 466
LpnPI CCDG 7 cut(s) 86, 106, 159, 286, 363, 384, 501
Lsp1109I GCAGC 1 cut(s) 452
MaeIII GTNAC 4 cut(s) 148, 200, 224, 490
MalI GATC 2 cut(s) 311, 468
MboI GATC 2 cut(s) 309, 466
MboII GAAGA 1 cut(s) 316
MluCI AATT 1 cut(s) 315
MnlI CCTC 4 cut(s) 44, 61, 100, 203
MroI TCCGGA 1 cut(s) 92
MseI TTAA 1 cut(s) 12
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 3 cut(s) 93, 273, 488
MspR9I CCNGG 1 cut(s) 274
Mva1269I GAATGC 1 cut(s) 368
MvnI CGCG 1 cut(s) 373
NciI CCSGG 1 cut(s) 274
NcoI CCATGG 1 cut(s) 501
NdeII GATC 2 cut(s) 309, 466
NlaIII CATG 3 cut(s) 138, 398, 505
NmuCI GTSAC 3 cut(s) 200, 224, 490
NsbI TGCGCA 1 cut(s) 75
NspI RCATGY 2 cut(s) 138, 398
PaeI GCATGC 1 cut(s) 398
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PctI GAATGC 1 cut(s) 368
PfeI GAWTC 1 cut(s) 368
PflFI GACNNNGTC 1 cut(s) 496
PflMI CCANNNNNTGG 1 cut(s) 276
PkrI GCNGC 3 cut(s) 144, 408, 442
PspFI CCCAGC 1 cut(s) 377
PspPI GGNCC 2 cut(s) 212, 498
PstI CTGCAG 1 cut(s) 442
PsyI GACNNNGTC 1 cut(s) 496
PvuII CAGCTG 1 cut(s) 443
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 3 cut(s) 143, 407, 441
Sau3AI GATC 2 cut(s) 309, 466
Sau96I GGNCC 2 cut(s) 212, 498
ScrFI CCNGG 1 cut(s) 274
SetI ASST 6 cut(s) 53, 258, 403, 445, 457, 481
SfcI CTRYAG 1 cut(s) 438
SinI GGWCC 2 cut(s) 212, 498
SphI GCATGC 1 cut(s) 398
Sse9I AATT 1 cut(s) 315
SsiI CCGC 3 cut(s) 143, 198, 407
StyD4I CCNGG 1 cut(s) 272
StyI CCWWGG 1 cut(s) 501
TaaI ACNGT 2 cut(s) 216, 248
TaqI TCGA 1 cut(s) 293
TasI AATT 1 cut(s) 315
TauI GCSGC 2 cut(s) 145, 409
TfiI GAWTC 1 cut(s) 368
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 1 cut(s) 253
TseFI GTSAC 3 cut(s) 200, 224, 490
TseI GCWGC 1 cut(s) 440
Tsp45I GTSAC 3 cut(s) 200, 224, 490
TspDTI ATGAA 1 cut(s) 489
TspGWI ACGGA 1 cut(s) 243
TspRI CASTG 1 cut(s) 253
Tth111I GACNNNGTC 1 cut(s) 496
Van91I CCANNNNNTGG 1 cut(s) 276
VpaK11BI GGWCC 2 cut(s) 212, 498
XceI RCATGY 2 cut(s) 138, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.