Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0012598

Physical Location & Seq

Genomic Coordinates Forward (+)

10438483 .. 10439312

Gene Structure 830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g11660.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAAACTTGGAAAATTGAACGGATTCAATTATTCCTTCAAGTTTTTCGCTTATAAATATAAGTGCACACAATCTCCTTCTTGTCTCACTCCCAACTCGTTTATATTCCAAAAGAATTACCAAATGGCAAGTAATTTAGGGCTTTTGGTTCCCCTTACCCTCATCGTCTTTAGTGTCGTCTCCCTCCCTCTCCCGTCCACCGCCATCTCCTCCTGCAATGACGCATGCAAAACCCTCGACGACTGCGCTGGCCAGCTCATCTGCATCAACGGCAAGTGTAACGACGACCCCGATATTGGGTCAACAGAATGCGGACACGGCTCTTCACCACCTCCTACGACTGACAACTGTAAGTCGTCAGGAACTCTAGTTTGTGACGGCAAATCATACCCGACATACACATGCTCTCCAGCTGTGACATCATCCACAAAAGCCAGCCTTACTCTCAACGATTTCAGCCAAGGCGGGGATGGCGGTGGCCCGTCATATTGTGACGGAAATTACCATAACAACAGCGAGCGGGTTGTGGCACTTTCCACTGGGTGGTTTAATAATAAGTCGAGGTGTTTTAATATGATAAGAATTACGGCAAGCAATGGGAAGAGTGTGACGGCAAAAGTGGTTGACGAATGTGATTCGCGTGCTGGATGCGATGAGGAGCATGGAGGTCAACCGCCGTGTCAGAACAACATTGTTGATGGATCTTCGGCTGTGTGGGACGCTTTGGGACTGAACAAAGATTTGGGCGTTGTGCCTGTTACTTGGTCCATGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

259

Amino Acids

27.36

Weight (kDa)

5.56

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012598)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g31600 FvH4_3g31620 FvH4_4g25200
malus_domestica	MD11G1140700.v1.1
prunus_persica	Prupe.6G105400_v2.0.a1 Prupe.6G105800_v2.0.a1
pyrus_communis	pycom11g11660
rosa_chinensis	RchiOBHm_Chr5g0022271 RchiOBHm_Chr5g0058241
rosa_laevigata	RLG00000035206
rosa_multiflora	Rmu_sc0000367.1_g000052 Rmu_sc0005639.1_g000026
rosa_roxburghii	Rroxscaffold_1G00022290
rosa_rugosa	Rorug05G0073000 Rorug05G0312800
rosa_samantha	Rh5DG159800 Rh5DG406900
rosa_wichuraiana	Rw5G014290 Rw5G035850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	54
AccB7I	CCANNNNNTGG	1 cut(s)	543
AccBSI	CCGCTC	1 cut(s)	520
AccII	CGCG	1 cut(s)	640
AciI	CCGC	6 cut(s)	201, 312, 465, 474, 520, 674
AclWI	GGATC	1 cut(s)	709
AcoI	YGGCCR	1 cut(s)	250
AdeI	CACNNNGTG	1 cut(s)	543
AfiI	CCNNNNNNNGG	4 cut(s)	296, 297, 466, 543
AgsI	TTSAA	3 cut(s)	19, 28, 40
AjuI	GAANNNNNNNTTGG	2 cut(s)	725, 757
AluBI	AGCT	2 cut(s)	256, 413
AluI	AGCT	2 cut(s)	256, 413
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	2 cut(s)	89, 184
Alw44I	GTGCAC	1 cut(s)	64
AlwI	GGATC	1 cut(s)	709
AoxI	GGCC	3 cut(s)	250, 478, 771
ApaLI	GTGCAC	1 cut(s)	64
Asp700I	GAANNNNTTC	1 cut(s)	23
AspLEI	GCGC	1 cut(s)	248
AspS9I	GGNCC	2 cut(s)	479, 765
AsuHPI	GGTGA	1 cut(s)	318
AvaII	GGWCC	1 cut(s)	765
BaeGI	GKGCMC	1 cut(s)	68
BalI	TGGCCA	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	68
BccI	CCATC	3 cut(s)	212, 464, 692
BceAI	ACGGC	6 cut(s)	286, 334, 394, 603, 627, 661
BcgI	CGANNNNNNTGC	2 cut(s)	217, 251
BcoDI	GTCTC	2 cut(s)	89, 184
BfaI	CTAG	2 cut(s)	368, 775
Bme18I	GGWCC	1 cut(s)	765
BmgT120I	GGNCC	2 cut(s)	479, 765
BmiI	GGNNCC	1 cut(s)	150
BmrI	ACTGGG	1 cut(s)	549
BmsI	GCATC	2 cut(s)	273, 638
BmuI	ACTGGG	1 cut(s)	549
BpmI	CTGGAG	1 cut(s)	393
BsaJI	CCNNGG	2 cut(s)	460, 768
BsaXI	ACNNNNNCTCC	4 cut(s)	58, 88, 391, 421
Bsc4I	CCNNNNNNNGG	4 cut(s)	296, 297, 466, 543
Bse1I	ACTGG	1 cut(s)	544
Bse3DI	GCAATG	2 cut(s)	223, 601
BseDI	CCNNGG	2 cut(s)	460, 768
BseGI	GGATG	3 cut(s)	422, 475, 653
BseLI	CCNNNNNNNGG	4 cut(s)	296, 297, 466, 543
BseMI	GCAATG	2 cut(s)	223, 601
BseNI	ACTGG	1 cut(s)	544
BseRI	GAGGAG	2 cut(s)	199, 671
BseSI	GKGCMC	1 cut(s)	68
Bsh1236I	CGCG	1 cut(s)	640
BshFI	GGCC	3 cut(s)	252, 480, 773
BsiHKAI	GWGCWC	1 cut(s)	68
BslFI	GGGAC	2 cut(s)	731, 741
BslI	CCNNNNNNNGG	4 cut(s)	296, 297, 466, 543
BsmAI	GTCTC	2 cut(s)	89, 184
BsmBI	CGTCTC	1 cut(s)	184
BsmFI	GGGAC	2 cut(s)	731, 741
BsmI	GAATGC	1 cut(s)	314
BsnI	GGCC	3 cut(s)	252, 480, 773
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	1 cut(s)	701
Bsp19I	CCATGG	1 cut(s)	768
BspACI	CCGC	6 cut(s)	201, 312, 465, 474, 520, 674
BspANI	GGCC	3 cut(s)	252, 480, 773
BspFNI	CGCG	1 cut(s)	640
BspLI	GGNNCC	1 cut(s)	150
BspPI	GGATC	1 cut(s)	709
BspQI	GCTCTTC	1 cut(s)	328
BsrBI	CCGCTC	1 cut(s)	520
BsrDI	GCAATG	2 cut(s)	223, 601
BsrI	ACTGG	1 cut(s)	544
BssECI	CCNNGG	2 cut(s)	460, 768
BssMI	GATC	1 cut(s)	701
BssT1I	CCWWGG	2 cut(s)	460, 768
Bst4CI	ACNGT	1 cut(s)	350
Bst6I	CTCTTC	2 cut(s)	328, 596
BstC8I	GCNNGC	7 cut(s)	226, 250, 254, 436, 518, 592, 642
BstDSI	CCRYGG	1 cut(s)	768
BstF5I	GGATG	3 cut(s)	422, 475, 653
BstFNI	CGCG	1 cut(s)	640
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	1 cut(s)	704
BstMAI	GTCTC	2 cut(s)	89, 184
BstMBI	GATC	1 cut(s)	701
BstMWI	GCNNNNNNNGC	3 cut(s)	270, 318, 471
BstNSI	RCATGY	2 cut(s)	228, 405
BstSLI	GKGCMC	1 cut(s)	68
BstUI	CGCG	1 cut(s)	640
BstX2I	RGATCY	1 cut(s)	701
BstYI	RGATCY	1 cut(s)	701
BsuRI	GGCC	3 cut(s)	252, 480, 773
BtgI	CCRYGG	1 cut(s)	768
BtgZI	GCGATG	1 cut(s)	666
BtsCI	GGATG	3 cut(s)	422, 475, 653
BtsIMutI	CAGTG	1 cut(s)	537
Cac8I	GCNNGC	7 cut(s)	226, 250, 254, 436, 518, 592, 642
CfoI	GCGC	1 cut(s)	248
Cfr13I	GGNCC	2 cut(s)	479, 765
CseI	GACGC	2 cut(s)	230, 728
CviAII	CATG	4 cut(s)	225, 402, 662, 769
DpnI	GATC	1 cut(s)	703
DpnII	GATC	1 cut(s)	701
DraIII	CACNNNGTG	1 cut(s)	543
EaeI	YGGCCR	1 cut(s)	250
Eam1104I	CTCTTC	2 cut(s)	328, 596
EarI	CTCTTC	2 cut(s)	328, 596
Eco130I	CCWWGG	2 cut(s)	460, 768
Eco47I	GGWCC	1 cut(s)	765
EcoT14I	CCWWGG	2 cut(s)	460, 768
ErhI	CCWWGG	2 cut(s)	460, 768
Esp3I	CGTCTC	1 cut(s)	184
FaeI	CATG	4 cut(s)	228, 405, 665, 772
FalI	AAGNNNNNCTT	2 cut(s)	423, 455
FaqI	GGGAC	2 cut(s)	731, 741
FatI	CATG	4 cut(s)	224, 401, 661, 768
FauI	CCCGC	2 cut(s)	458, 513
FokI	GGATG	3 cut(s)	409, 482, 660
FspBI	CTAG	2 cut(s)	368, 775
GlaI	GCGC	1 cut(s)	247
GsuI	CTGGAG	1 cut(s)	393
HaeIII	GGCC	3 cut(s)	252, 480, 773
HgaI	GACGC	2 cut(s)	230, 728
HhaI	GCGC	1 cut(s)	248
Hin1II	CATG	4 cut(s)	228, 405, 665, 772
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HincII	GTYRAC	3 cut(s)	303, 625, 671
HindII	GTYRAC	3 cut(s)	303, 625, 671
HinfI	GANTC	2 cut(s)	24, 635
HphI	GGTGA	1 cut(s)	318
Hpy166II	GTNNAC	5 cut(s)	66, 198, 303, 625, 671
Hpy188I	TCNGA	1 cut(s)	684
Hpy188III	TCNNGA	1 cut(s)	360
Hpy8I	GTNNAC	5 cut(s)	66, 198, 303, 625, 671
Hpy99I	CGWCG	2 cut(s)	242, 287
HpyAV	CCTTC	2 cut(s)	46, 87
HpyCH4III	ACNGT	1 cut(s)	350
HpyCH4V	TGCA	4 cut(s)	66, 216, 228, 264
HpyF10VI	GCNNNNNNNGC	3 cut(s)	270, 318, 471
Hsp92II	CATG	4 cut(s)	228, 405, 665, 772
HspAI	GCGC	1 cut(s)	246
Kzo9I	GATC	1 cut(s)	701
LguI	GCTCTTC	1 cut(s)	328
LmnI	GCTCC	1 cut(s)	658
LpnPI	CCDG	9 cut(s)	226, 234, 266, 345, 423, 448, 525, 630, 768
LweI	GCATC	2 cut(s)	273, 638
MaeI	CTAG	2 cut(s)	368, 775
MaeIII	GTNAC	6 cut(s)	278, 374, 415, 491, 607, 757
MalI	GATC	1 cut(s)	703
MbiI	CCGCTC	1 cut(s)	520
MboI	GATC	1 cut(s)	701
MboII	GAAGA	3 cut(s)	315, 613, 696
MflI	RGATCY	1 cut(s)	701
MhlI	GDGCHC	1 cut(s)	68
MlsI	TGGCCA	1 cut(s)	252
MluCI	AATT	6 cut(s)	14, 28, 115, 133, 499, 582
MluNI	TGGCCA	1 cut(s)	252
MnlI	CCTC	9 cut(s)	170, 194, 198, 220, 245, 342, 555, 649, 659
Mox20I	TGGCCA	1 cut(s)	252
MroXI	GAANNNNTTC	1 cut(s)	23
MscI	TGGCCA	1 cut(s)	252
MseI	TTAA	2 cut(s)	549, 570
MslI	CAYNNNNRTG	1 cut(s)	400
Msp20I	TGGCCA	1 cut(s)	252
MspA1I	CMGCKG	1 cut(s)	413
Mva1269I	GAATGC	1 cut(s)	314
MvnI	CGCG	1 cut(s)	640
MwoI	GCNNNNNNNGC	3 cut(s)	270, 318, 471
NcoI	CCATGG	1 cut(s)	768
NdeII	GATC	1 cut(s)	701
NlaIII	CATG	4 cut(s)	228, 405, 665, 772
NlaIV	GGNNCC	1 cut(s)	150
NmuCI	GTSAC	4 cut(s)	374, 415, 491, 607
NspI	RCATGY	2 cut(s)	228, 405
PaeI	GCATGC	1 cut(s)	228
PciSI	GCTCTTC	1 cut(s)	328
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PctI	GAATGC	1 cut(s)	314
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	2 cut(s)	24, 635
PflMI	CCANNNNNTGG	1 cut(s)	543
PsiI	TTATAA	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	150
PspPI	GGNCC	2 cut(s)	479, 765
PsuI	RGATCY	1 cut(s)	701
PvuII	CAGCTG	1 cut(s)	413
RseI	CAYNNNNRTG	1 cut(s)	400
SapI	GCTCTTC	1 cut(s)	328
SaqAI	TTAA	2 cut(s)	549, 570
Sau3AI	GATC	1 cut(s)	701
Sau96I	GGNCC	2 cut(s)	479, 765
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	5 cut(s)	258, 334, 415, 566, 670
SfaNI	GCATC	2 cut(s)	273, 638
SinI	GGWCC	1 cut(s)	765
SmiMI	CAYNNNNRTG	1 cut(s)	400
SphI	GCATGC	1 cut(s)	228
Sse9I	AATT	6 cut(s)	14, 28, 115, 133, 499, 582
SsiI	CCGC	6 cut(s)	201, 312, 465, 474, 520, 674
SspMI	CTAG	2 cut(s)	368, 775
StyI	CCWWGG	2 cut(s)	460, 768
TaaI	ACNGT	1 cut(s)	350
TaqI	TCGA	2 cut(s)	237, 560
TasI	AATT	6 cut(s)	14, 28, 115, 133, 499, 582
TfiI	GAWTC	2 cut(s)	24, 635
Tru1I	TTAA	2 cut(s)	549, 570
Tru9I	TTAA	2 cut(s)	549, 570
TscAI	CASTG	1 cut(s)	544
TseFI	GTSAC	4 cut(s)	374, 415, 491, 607
Tsp45I	GTSAC	4 cut(s)	374, 415, 491, 607
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	36, 510
TspRI	CASTG	1 cut(s)	544
Van91I	CCANNNNNTGG	1 cut(s)	543
VneI	GTGCAC	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	765
XceI	RCATGY	2 cut(s)	228, 405
XcmI	CCANNNNNNNNNTGG	1 cut(s)	467
XmnI	GAANNNNTTC	1 cut(s)	23
XspI	CTAG	2 cut(s)	368, 775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.