Rroxscaffold_1G00022290

Kiwellin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0012598
Physical Location & Seq
Forward (+)
27526814 .. 27527479
666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00022290.1

Sequence Viewer

Length: 666 bp
ATGGCAAGTTCTTTAGTATGTTTGGCATCTCTTTCCCTCGTCTTCATTTTCATCTCCATCCCTCTCCCGTACTCCACAGCTATCTCCTCCTGCAATGGCGCATGCAAAACCTTGAACGACTGTGCTGGCCAACTCATCTGTATCAACCAAAAATGCACCGATGACCCCGATGTTGGGACTCACATATGCGGCAGGGGTGGGGGAGGAGGCTCATCACCTTCTCCTAGCCCCAACAATTGCAGACCCTTTGGAACACTGGTTTGCAAGGGCAAGTCGTACCCTAAATACTCGTGCTCTCCCCCAGTAACATCATCCACCGAAGCCTTACTTACACTCAACGATTTCAGCGAAGGCGGTGATGGGGGCGGGCCATCAGAATGTGACGAACAGTATCATCCAAACAGTGAGCGGGTTGTGGCACTTTCCACTGGGTGGTTTGATAATAAATCGAGGTGCGGGAAGGAGATAAGAATTAAGGCAAGTAATGGGAAGACTACGACTGCGAGAGTGGTGGATGAATGTGATTCGCGTAATGGATGTGATAAAGAGCATGCGGGGCAGCCGACGTGTGAAAACAATATCGTGGATGGATCTGCATCTGTGTGGAACGCTTTGGGACTCGATCAGGATCTAGGTAAGGTGTCGGTGACTTGGTCCATGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

221

Amino Acids

23.11

Weight (kDa)

5.18

Isoelectric Point (pI)

52.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 72 - 219 1.8e-55 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 432
AccBSI CCGCTC 1 cut(s) 409
AccII CGCG 1 cut(s) 529
AciI CCGC 6 cut(s) 189, 354, 366, 409, 456, 554
AclWI GGATC 2 cut(s) 598, 636
AcoI YGGCCR 1 cut(s) 127
AdeI CACNNNGTG 1 cut(s) 432
AfaI GTAC 2 cut(s) 71, 278
AfiI CCNNNNNNNGG 3 cut(s) 173, 174, 432
AflIII ACRYGT 1 cut(s) 566
AgsI TTSAA 1 cut(s) 115
AjiI CACGTC 1 cut(s) 567
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
Alw21I GWGCWC 1 cut(s) 296
AlwI GGATC 2 cut(s) 598, 636
AoxI GGCC 2 cut(s) 127, 368
ApeKI GCWGC 1 cut(s) 559
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 2 cut(s) 368, 654
AsuHPI GGTGA 3 cut(s) 207, 368, 658
AvaII GGWCC 1 cut(s) 654
BalI TGGCCA 1 cut(s) 129
BauI CACGAG 1 cut(s) 289
BbsI GAAGAC 2 cut(s) 34, 497
Bbv12I GWGCWC 1 cut(s) 296
BbvI GCAGC 1 cut(s) 571
BccI CCATC 4 cut(s) 65, 353, 379, 581
BfaI CTAG 2 cut(s) 225, 632
BisI GCNGC 2 cut(s) 190, 560
BlsI GCNGC 2 cut(s) 191, 561
Bme18I GGWCC 1 cut(s) 654
BmgBI CACGTC 1 cut(s) 567
BmgT120I GGNCC 2 cut(s) 368, 654
BmrI ACTGGG 2 cut(s) 296, 438
BmsI GCATC 2 cut(s) 35, 605
BmuI ACTGGG 2 cut(s) 296, 438
BpiI GAAGAC 2 cut(s) 34, 497
BsaBI GATNNNNATC 2 cut(s) 595, 627
BsaJI CCNNGG 1 cut(s) 657
Bsc4I CCNNNNNNNGG 3 cut(s) 173, 174, 432
Bse1I ACTGG 3 cut(s) 261, 302, 433
Bse3DI GCAATG 1 cut(s) 100
Bse8I GATNNNNATC 2 cut(s) 595, 627
BseDI CCNNGG 1 cut(s) 657
BseGI GGATG 6 cut(s) 57, 311, 394, 520, 542, 592
BseJI GATNNNNATC 2 cut(s) 595, 627
BseLI CCNNNNNNNGG 3 cut(s) 173, 174, 432
BseMI GCAATG 1 cut(s) 100
BseNI ACTGG 3 cut(s) 261, 302, 433
BseRI GAGGAG 2 cut(s) 76, 219
BseXI GCAGC 1 cut(s) 571
Bsh1236I CGCG 1 cut(s) 529
BshFI GGCC 2 cut(s) 129, 370
BsiHKAI GWGCWC 1 cut(s) 296
BslFI GGGAC 2 cut(s) 190, 630
BslI CCNNNNNNNGG 3 cut(s) 173, 174, 432
BsmFI GGGAC 2 cut(s) 190, 630
BsnI GGCC 2 cut(s) 129, 370
Bsp1286I GDGCHC 1 cut(s) 296
Bsp143I GATC 3 cut(s) 590, 622, 628
Bsp19I CCATGG 1 cut(s) 657
BspACI CCGC 6 cut(s) 189, 354, 366, 409, 456, 554
BspANI GGCC 2 cut(s) 129, 370
BspFNI CGCG 1 cut(s) 529
BspPI GGATC 2 cut(s) 598, 636
BsrBI CCGCTC 1 cut(s) 409
BsrDI GCAATG 1 cut(s) 100
BsrI ACTGG 3 cut(s) 261, 302, 433
BssECI CCNNGG 1 cut(s) 657
BssMI GATC 3 cut(s) 590, 622, 628
BssSI CACGAG 1 cut(s) 289
BssT1I CCWWGG 1 cut(s) 657
Bst2BI CACGAG 1 cut(s) 289
Bst4CI ACNGT 3 cut(s) 122, 390, 404
BstC8I GCNNGC 4 cut(s) 103, 127, 368, 552
BstDSI CCRYGG 1 cut(s) 657
BstF5I GGATG 6 cut(s) 57, 311, 394, 520, 542, 592
BstFNI CGCG 1 cut(s) 529
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 3 cut(s) 593, 625, 631
BstMBI GATC 3 cut(s) 590, 622, 628
BstMWI GCNNNNNNNGC 1 cut(s) 556
BstNSI RCATGY 2 cut(s) 105, 554
BstUI CGCG 1 cut(s) 529
BstV1I GCAGC 1 cut(s) 571
BstV2I GAAGAC 2 cut(s) 34, 497
BstX2I RGATCY 2 cut(s) 590, 628
BstYI RGATCY 2 cut(s) 590, 628
BsuRI GGCC 2 cut(s) 129, 370
BtgI CCRYGG 1 cut(s) 657
BtrI CACGTC 1 cut(s) 567
BtsCI GGATG 6 cut(s) 57, 311, 394, 520, 542, 592
BtsIMutI CAGTG 3 cut(s) 254, 409, 426
Cac8I GCNNGC 4 cut(s) 103, 127, 368, 552
CfoI GCGC 1 cut(s) 101
Cfr13I GGNCC 2 cut(s) 368, 654
Csp6I GTAC 2 cut(s) 70, 277
CviAII CATG 4 cut(s) 102, 551, 658, 663
CviJI RGCY 7 cut(s) 80, 129, 210, 228, 323, 370, 562
CviKI_1 RGCY 7 cut(s) 80, 129, 210, 228, 323, 370, 562
CviQI GTAC 2 cut(s) 70, 277
DpnI GATC 3 cut(s) 592, 624, 630
DpnII GATC 3 cut(s) 590, 622, 628
DraIII CACNNNGTG 1 cut(s) 432
EaeI YGGCCR 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 657
Eco47I GGWCC 1 cut(s) 654
EcoT14I CCWWGG 1 cut(s) 657
ErhI CCWWGG 1 cut(s) 657
FaeI CATG 4 cut(s) 105, 554, 661, 666
FaiI YATR 7 cut(s) 19, 103, 185, 187, 552, 659, 664
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FaqI GGGAC 2 cut(s) 190, 630
FatI CATG 4 cut(s) 101, 550, 657, 662
FauI CCCGC 4 cut(s) 359, 402, 449, 547
FauNDI CATATG 1 cut(s) 185
Fnu4HI GCNGC 2 cut(s) 190, 560
FokI GGATG 6 cut(s) 44, 298, 381, 527, 549, 599
Fsp4HI GCNGC 2 cut(s) 190, 560
FspBI CTAG 2 cut(s) 225, 632
GlaI GCGC 1 cut(s) 100
GluI GCNGC 2 cut(s) 190, 560
HaeIII GGCC 2 cut(s) 129, 370
HhaI GCGC 1 cut(s) 101
Hin1II CATG 4 cut(s) 105, 554, 661, 666
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HinfI GANTC 3 cut(s) 178, 524, 618
HphI GGTGA 3 cut(s) 207, 368, 658
Hpy188I TCNGA 1 cut(s) 376
Hpy188III TCNNGA 1 cut(s) 626
Hpy99I CGWCG 1 cut(s) 568
HpyAV CCTTC 3 cut(s) 228, 344, 454
HpyCH4III ACNGT 3 cut(s) 122, 390, 404
HpyCH4IV ACGT 1 cut(s) 566
HpyCH4V TGCA 6 cut(s) 93, 105, 156, 240, 264, 596
HpyF10VI GCNNNNNNNGC 1 cut(s) 556
HpySE526I ACGT 1 cut(s) 566
Hsp92II CATG 4 cut(s) 105, 554, 661, 666
HspAI GCGC 1 cut(s) 99
Kzo9I GATC 3 cut(s) 590, 622, 628
LpnPI CCDG 7 cut(s) 103, 111, 178, 242, 315, 414, 611
Lsp1109I GCAGC 1 cut(s) 571
LweI GCATC 2 cut(s) 35, 605
MaeI CTAG 2 cut(s) 225, 632
MaeII ACGT 1 cut(s) 566
MaeIII GTNAC 3 cut(s) 304, 380, 646
MalI GATC 3 cut(s) 592, 624, 630
MbiI CCGCTC 1 cut(s) 409
MboI GATC 3 cut(s) 590, 622, 628
MboII GAAGA 2 cut(s) 34, 502
MfeI CAATTG 1 cut(s) 235
MflI RGATCY 2 cut(s) 590, 628
MhlI GDGCHC 1 cut(s) 296
MlsI TGGCCA 1 cut(s) 129
MluCI AATT 2 cut(s) 235, 471
MluNI TGGCCA 1 cut(s) 129
MlyI GAGTC 2 cut(s) 172, 612
MnlI CCTC 6 cut(s) 47, 72, 97, 197, 200, 444
Mox20I TGGCCA 1 cut(s) 129
MscI TGGCCA 1 cut(s) 129
MseI TTAA 1 cut(s) 474
MslI CAYNNNNRTG 2 cut(s) 376, 601
Msp20I TGGCCA 1 cut(s) 129
MunI CAATTG 1 cut(s) 235
MvnI CGCG 1 cut(s) 529
MwoI GCNNNNNNNGC 1 cut(s) 556
NcoI CCATGG 1 cut(s) 657
NdeI CATATG 1 cut(s) 185
NdeII GATC 3 cut(s) 590, 622, 628
NlaIII CATG 4 cut(s) 105, 554, 661, 666
NmuCI GTSAC 2 cut(s) 380, 646
NspI RCATGY 2 cut(s) 105, 554
PaeI GCATGC 2 cut(s) 105, 554
PcsI WCGNNNNNNNCGW 1 cut(s) 345
PfeI GAWTC 1 cut(s) 524
PflFI GACNNNGTC 1 cut(s) 652
PflMI CCANNNNNTGG 1 cut(s) 432
PkrI GCNGC 2 cut(s) 191, 561
PleI GAGTC 2 cut(s) 172, 612
PpsI GAGTC 2 cut(s) 172, 612
PspPI GGNCC 2 cut(s) 368, 654
PsuI RGATCY 2 cut(s) 590, 628
PsyI GACNNNGTC 1 cut(s) 652
RsaI GTAC 2 cut(s) 71, 278
RsaNI GTAC 2 cut(s) 70, 277
RseI CAYNNNNRTG 2 cut(s) 376, 601
SaqAI TTAA 1 cut(s) 474
SatI GCNGC 2 cut(s) 190, 560
Sau3AI GATC 3 cut(s) 590, 622, 628
Sau96I GGNCC 2 cut(s) 368, 654
SchI GAGTC 2 cut(s) 172, 612
SduI GDGCHC 1 cut(s) 296
SetI ASST 7 cut(s) 82, 113, 220, 455, 569, 637, 642
SfaNI GCATC 2 cut(s) 35, 605
SinI GGWCC 1 cut(s) 654
SmiMI CAYNNNNRTG 2 cut(s) 376, 601
SphI GCATGC 2 cut(s) 105, 554
Sse9I AATT 2 cut(s) 235, 471
SsiI CCGC 6 cut(s) 189, 354, 366, 409, 456, 554
SspMI CTAG 2 cut(s) 225, 632
StyI CCWWGG 1 cut(s) 657
TaaI ACNGT 3 cut(s) 122, 390, 404
TaiI ACGT 1 cut(s) 569
TaqI TCGA 2 cut(s) 449, 621
TasI AATT 2 cut(s) 235, 471
TauI GCSGC 1 cut(s) 192
TfiI GAWTC 1 cut(s) 524
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TscAI CASTG 3 cut(s) 261, 409, 433
TseFI GTSAC 2 cut(s) 380, 646
TseI GCWGC 1 cut(s) 559
Tsp45I GTSAC 2 cut(s) 380, 646
TspDTI ATGAA 3 cut(s) 34, 40, 531
TspRI CASTG 3 cut(s) 261, 409, 433
Tth111I GACNNNGTC 1 cut(s) 652
Van91I CCANNNNNTGG 1 cut(s) 432
VpaK11BI GGWCC 1 cut(s) 654
XceI RCATGY 2 cut(s) 105, 554
XspI CTAG 2 cut(s) 225, 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.