FvH4_3g33632

Interactor of constitutive active ROPs

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
29155825 .. 29162092
6268 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g33632.t10

Sequence Viewer

Length: 1899 bp
ATGCAAACCCCAAAAGCAAGAAGTGGTGCCTCTGAAGTACCTCAACGGGTATCCCCCACTCAAAGGGTAACACCGCCTCTAAGGGTATCCCCAACTCAAAAAGATTCTCCTCGAGTAGTGCGCCGCCAACTTAAGCCAACTGCTTTGGAGACTGATCCTGCATCTACTTCAAATCAAGCTAGACGTCTATCTAAAGACAGAAGCCCAAAAGTCAATGAGAGGCGGTCACCCAGAAGTCCATTGCCTGAGAAGAAAGGCCCAAGTAGAGTATCTGAATTGGAATCTCAGATTACTCAACTCCAGGAGGACTTGAAGAAAGCAAACAACGAGCTTCAGTCTTCTGAGTCATGCAAGAAACAAGCTCAGCAAGATGCTGAGGAATCAAAGAAGCAATTTCTCGCCTTGTCATCAAAGCTTGAAGAGTCTCAGCAGCAGATTCCTGATCTTTGTATTTCTGAGGAAGCCCGTGTTATCAAGCTCCAAAAGATTTCACAAGAAAAAGATCAAGCATGGCAGTCAGAGCTTGAGGCTGTCCAGAAGCAGCACTCAGTCGATGCAGCTGCCTTGGCATCTGCCATTGATGAGATTGAAAGGCTTAAACTGCAGCTTGAAATGGTAGCTGTAACTGAGGCTGATCAGACGAAGCATGCTGAATCAGTCAATGTAGAGCTCCAAAGCTTGAAAGTAAACTTGGCAGAAACTCTTTCACTTGTAGAGAACATGAAAAACGAATTGAATGACTGTAAGGAAGCTGAGGCTCAAGCACAAGCACAGGTTAGTCAAACCCTGCTGCAGCTGGAATCTGCAAGAAGAACGGTGGAGACACTCAGTTCAGATGGCATGAAAGCCATGGAAGCTTACAACTCGGTTGCTTCTGAGTTAGATCAGTCAAAAGCGCGGGTAAATTCACTAGAAGAAATTGTTGCCAAACTCAAGGCTGATCTGGATAATGTTAGCAGCAACAATGACCTTGAGCGGGAATTTGGAGAAAAGCACGAGTCCATGAGACCAAATGAGGTCGAGGCAGAGCTTTACAACTTGAAGTCTGAAGTGAAACGACTAAAATCTACTCTTGAGACTGCTGAGACCAAATACCATGAAGAACAAATTCAGAGCACTGCGCAGATAAGAAGTGCTCATGAACTGGTAGAGCAGATGAGATCTGCTTCTAGTCAGAGAGAGGATGAACTGGAGGATGAACTGAAGAGAACCAAAGCTGGTGTTGAAGCGTTGAAGGCCCACCTAATGGATAAGGAAACTGAGTTACAATGCATTTCAGAGGAAAACGAGGGGCTGAATGTGAAGCTTCAGCAGAGCCTGTCATGCCAGAGAGAGTATGAACTGGAAAAGGAAGTGAAAGAACTGACAAAACTTGTTTCAGATTTGAAGGCTCATGTGATGGATAAAGAAACAGAATTGCAGAGTATATCAGAAGAAAATGAAATGCTGCGAGTGGAAATCAATAAAACCGAAATGGACAAGAACAAAGCGAATGAGGAGGTAGTGGCAGAAGTACAGGCAGCAAGATGTGCCGAGAGAGAGGCTCTCATGAAACTTGGAATTGTGATGGAGGAGGCAGATAAGAGCAGCAAGAAGGTAGCAAGGGTGACTGAACAGCTGGAGGCAGCACAGGCGGCCAGTGCAGAATTGGAGGCGGAACTGAGAAAGCTGAAGGTGCAGTCTGGCCAGTGGAGGAAAGCTGCTGAGGCAGCTGCAGCCATACTTTCCTCAGGGAACGGCAAGATCATGGAGAGAACTGTATCCATGGATAGCAACTATCATGTTCCTGGAAAGCTTGGCTCACCGTACTCAGAAGATATGGATGACGAGATGCTGAAAAAGAAAAATGGGAACATGCTGAAGAAGATTGGTGTCTTTTGGAAGAAGCCACAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families
No domains found.

Protein Analysis

633

Amino Acids

71.0

Weight (kDa)

5.33

Isoelectric Point (pI)

53.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 187
Acc16I TGCGCA 1 cut(s) 1122
AccB1I GGYRCC 1 cut(s) 26
AccB7I CCANNNNNTGG 1 cut(s) 1246
AccBSI CCGCTC 1 cut(s) 976
AccII CGCG 1 cut(s) 898
AciI CCGC 7 cut(s) 74, 124, 223, 898, 976, 1634, 1655
AclWI GGATC 1 cut(s) 149
AcoI YGGCCR 2 cut(s) 1635, 1684
AcsI RAATTY 3 cut(s) 904, 980, 1107
AcuI CTGAAG 7 cut(s) 54, 317, 1068, 1223, 1292, 1691, 1880
AcyI GRCGYC 1 cut(s) 184
AfaI GTAC 3 cut(s) 39, 1515, 1808
AfiI CCNNNNNNNGG 3 cut(s) 63, 976, 1246
AflII CTTAAG 1 cut(s) 131
AjnI CCWGG 2 cut(s) 300, 1786
AjuI GAANNNNNNNTTGG 2 cut(s) 674, 706
Alw21I GWGCWC 3 cut(s) 672, 1118, 1138
Alw26I GTCTC 6 cut(s) 143, 429, 815, 1000, 1070, 1079
AlwI GGATC 1 cut(s) 149
AlwNI CAGNNNCTG 1 cut(s) 1318
Ama87I CYCGRG 1 cut(s) 111
AoxI GGCC 4 cut(s) 256, 1236, 1635, 1684
ApoI RAATTY 3 cut(s) 904, 980, 1107
Asp700I GAANNNNTTC 1 cut(s) 1107
AspLEI GCGC 3 cut(s) 123, 898, 1123
AspS9I GGNCC 2 cut(s) 257, 1237
AsuHPI GGTGA 3 cut(s) 219, 1618, 1794
AvaI CYCGRG 1 cut(s) 111
AxyI CCTNAGG 1 cut(s) 1729
BalI TGGCCA 1 cut(s) 1686
BanI GGYRCC 1 cut(s) 26
BanII GRGCYC 1 cut(s) 672
BauI CACGAG 1 cut(s) 995
BbsI GAAGAC 1 cut(s) 330
Bbv12I GWGCWC 3 cut(s) 672, 1118, 1138
BbvCI CCTCAGC 3 cut(s) 375, 753, 1704
BccI CCATC 3 cut(s) 830, 1393, 1561
BceAI ACGGC 1 cut(s) 1753
BcgI CGANNNNNNTGC 2 cut(s) 542, 576
BciT130I CCWGG 2 cut(s) 302, 1788
BciVI GTATCC 3 cut(s) 61, 97, 1771
BclI TGATCA 1 cut(s) 634
BcoDI GTCTC 6 cut(s) 143, 429, 815, 1000, 1070, 1079
BfaI CTAG 3 cut(s) 180, 911, 1170
BfmI CTRYAG 3 cut(s) 602, 791, 1713
BfrI CTTAAG 1 cut(s) 131
BfuI GTATCC 3 cut(s) 61, 97, 1771
BglII AGATCT 1 cut(s) 1160
BlpI GCTNAGC 1 cut(s) 363
Bme1390I CCNGG 2 cut(s) 302, 1788
BmeT110I CYCGRG 1 cut(s) 111
BmgT120I GGNCC 2 cut(s) 257, 1237
BmiI GGNNCC 1 cut(s) 28
BmrFI CCNGG 2 cut(s) 302, 1788
BmsI GCATC 5 cut(s) 170, 361, 544, 578, 1821
BpiI GAAGAC 1 cut(s) 330
BplI GAGNNNNNCTC 4 cut(s) 1528, 1560, 1530, 1562
BpmI CTGGAG 3 cut(s) 284, 1211, 1640
Bpu10I CCTNAGC 3 cut(s) 375, 753, 1704
Bpu1102I GCTNAGC 1 cut(s) 363
BpuEI CTTGAG 5 cut(s) 545, 744, 917, 992, 1094
BsaHI GRCGYC 1 cut(s) 184
BsaI GGTCTC 2 cut(s) 1000, 1079
BsaJI CCNNGG 3 cut(s) 564, 849, 1764
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 976, 1246
Bse1I ACTGG 5 cut(s) 1149, 1194, 1347, 1638, 1687
Bse21I CCTNAGG 1 cut(s) 1729
Bse3DI GCAATG 1 cut(s) 239
BseBI CCWGG 2 cut(s) 302, 1788
BseDI CCNNGG 3 cut(s) 564, 849, 1764
BseGI GGATG 3 cut(s) 1189, 1201, 1828
BseLI CCNNNNNNNGG 3 cut(s) 63, 976, 1246
BseMI GCAATG 1 cut(s) 239
BseNI ACTGG 5 cut(s) 1149, 1194, 1347, 1638, 1687
BseRI GAGGAG 3 cut(s) 99, 1511, 1586
BsgI GTGCAG 2 cut(s) 1662, 1697
Bsh1236I CGCG 1 cut(s) 898
BshFI GGCC 4 cut(s) 258, 1238, 1637, 1686
BshNI GGYRCC 1 cut(s) 26
BsiHKAI GWGCWC 3 cut(s) 672, 1118, 1138
BsiHKCI CYCGRG 1 cut(s) 111
BslI CCNNNNNNNGG 3 cut(s) 63, 976, 1246
BsmAI GTCTC 6 cut(s) 143, 429, 815, 1000, 1070, 1079
BsnI GGCC 4 cut(s) 258, 1238, 1637, 1686
Bso31I GGTCTC 2 cut(s) 1000, 1079
BsoBI CYCGRG 1 cut(s) 111
Bsp1286I GDGCHC 3 cut(s) 672, 1118, 1138
Bsp143I GATC 8 cut(s) 154, 442, 502, 634, 883, 940, 1160, 1743
Bsp1720I GCTNAGC 1 cut(s) 363
Bsp19I CCATGG 2 cut(s) 849, 1764
BspACI CCGC 7 cut(s) 74, 124, 223, 898, 976, 1634, 1655
BspANI GGCC 4 cut(s) 258, 1238, 1637, 1686
BspFNI CGCG 1 cut(s) 898
BspHI TCATGA 2 cut(s) 1138, 1548
BspLI GGNNCC 1 cut(s) 28
BspMAI CTGCAG 3 cut(s) 606, 795, 1717
BspPI GGATC 1 cut(s) 149
BspT107I GGYRCC 1 cut(s) 26
BspTI CTTAAG 1 cut(s) 131
BspTNI GGTCTC 2 cut(s) 1000, 1079
BsrBI CCGCTC 1 cut(s) 976
BsrDI GCAATG 1 cut(s) 239
BsrI ACTGG 5 cut(s) 1149, 1194, 1347, 1638, 1687
BssECI CCNNGG 3 cut(s) 564, 849, 1764
BssMI GATC 8 cut(s) 154, 442, 502, 634, 883, 940, 1160, 1743
BssNI GRCGYC 1 cut(s) 184
BssSI CACGAG 1 cut(s) 995
BssT1I CCWWGG 3 cut(s) 564, 849, 1764
Bst2BI CACGAG 1 cut(s) 995
Bst2UI CCWGG 2 cut(s) 302, 1788
Bst4CI ACNGT 4 cut(s) 743, 817, 1759, 1806
Bst6I CTCTTC 2 cut(s) 414, 1199
BstACI GRCGYC 1 cut(s) 184
BstAFI CTTAAG 1 cut(s) 131
BstAPI GCANNNNNTGC 1 cut(s) 1529
BstC8I GCNNGC 1 cut(s) 648
BstDSI CCRYGG 2 cut(s) 849, 1764
BstEII GGTNACC 1 cut(s) 225
BstF5I GGATG 3 cut(s) 1189, 1201, 1828
BstFNI CGCG 1 cut(s) 898
BstHHI GCGC 3 cut(s) 123, 898, 1123
BstKTI GATC 8 cut(s) 157, 445, 505, 637, 886, 943, 1163, 1746
BstMAI GTCTC 6 cut(s) 143, 429, 815, 1000, 1070, 1079
BstMBI GATC 8 cut(s) 154, 442, 502, 634, 883, 940, 1160, 1743
BstNI CCWGG 2 cut(s) 302, 1788
BstNSI RCATGY 2 cut(s) 650, 1858
BstPI GGTNACC 1 cut(s) 225
BstSCI CCNGG 2 cut(s) 300, 1786
BstSFI CTRYAG 3 cut(s) 602, 791, 1713
BstUI CGCG 1 cut(s) 898
BstV2I GAAGAC 1 cut(s) 330
BstX2I RGATCY 1 cut(s) 1160
BstYI RGATCY 1 cut(s) 1160
Bsu36I CCTNAGG 1 cut(s) 1729
BsuI GTATCC 3 cut(s) 61, 97, 1771
BsuRI GGCC 4 cut(s) 258, 1238, 1637, 1686
BtgI CCRYGG 2 cut(s) 849, 1764
BtsCI GGATG 3 cut(s) 1189, 1201, 1828
BtsI GCAGTG 1 cut(s) 1116
BtsIMutI CAGTG 3 cut(s) 1116, 1645, 1694
Cac8I GCNNGC 1 cut(s) 648
CaiI CAGNNNCTG 1 cut(s) 1318
CciI TCATGA 2 cut(s) 1138, 1548
CfoI GCGC 3 cut(s) 123, 898, 1123
Cfr13I GGNCC 2 cut(s) 257, 1237
Csp6I GTAC 3 cut(s) 38, 1514, 1807
CviQI GTAC 3 cut(s) 38, 1514, 1807
DpnI GATC 8 cut(s) 156, 444, 504, 636, 885, 942, 1162, 1745
DpnII GATC 8 cut(s) 154, 442, 502, 634, 883, 940, 1160, 1743
EaeI YGGCCR 2 cut(s) 1635, 1684
Eam1104I CTCTTC 2 cut(s) 414, 1199
EarI CTCTTC 2 cut(s) 414, 1199
EciI GGCGGA 1 cut(s) 1670
Ecl136II GAGCTC 1 cut(s) 670
Eco130I CCWWGG 3 cut(s) 564, 849, 1764
Eco24I GRGCYC 1 cut(s) 672
Eco31I GGTCTC 2 cut(s) 1000, 1079
Eco53kI GAGCTC 1 cut(s) 670
Eco57I CTGAAG 7 cut(s) 54, 317, 1068, 1223, 1292, 1691, 1880
Eco81I CCTNAGG 1 cut(s) 1729
Eco88I CYCGRG 1 cut(s) 111
Eco91I GGTNACC 1 cut(s) 225
EcoICRI GAGCTC 1 cut(s) 670
EcoO65I GGTNACC 1 cut(s) 225
EcoRII CCWGG 2 cut(s) 300, 1786
EcoT14I CCWWGG 3 cut(s) 564, 849, 1764
EcoT22I ATGCAT 1 cut(s) 1274
EcoT38I GRGCYC 1 cut(s) 672
ErhI CCWWGG 3 cut(s) 564, 849, 1764
FauI CCCGC 2 cut(s) 891, 969
FbaI TGATCA 1 cut(s) 634
FokI GGATG 3 cut(s) 1196, 1208, 1835
FriOI GRGCYC 1 cut(s) 672
FspBI CTAG 3 cut(s) 180, 911, 1170
FspI TGCGCA 1 cut(s) 1122
GlaI GCGC 3 cut(s) 122, 897, 1122
GsuI CTGGAG 3 cut(s) 284, 1211, 1640
HaeIII GGCC 4 cut(s) 258, 1238, 1637, 1686
HhaI GCGC 3 cut(s) 123, 898, 1123
Hin1I GRCGYC 1 cut(s) 184
Hin6I GCGC 3 cut(s) 121, 896, 1121
HinP1I GCGC 3 cut(s) 121, 896, 1121
HindIII AAGCTT 5 cut(s) 413, 676, 855, 1304, 1793
HinfI GANTC 9 cut(s) 104, 281, 344, 380, 422, 436, 653, 800, 998
HphI GGTGA 3 cut(s) 219, 1618, 1794
Hpy166II GTNNAC 1 cut(s) 688
Hpy188III TCNNGA 6 cut(s) 440, 535, 944, 1073, 1139, 1549
Hpy8I GTNNAC 1 cut(s) 688
HpyAV CCTTC 4 cut(s) 1228, 1381, 1588, 1666
HpyCH4III ACNGT 4 cut(s) 743, 817, 1759, 1806
HpyCH4IV ACGT 1 cut(s) 184
HpySE526I ACGT 1 cut(s) 184
Hsp92I GRCGYC 1 cut(s) 184
HspAI GCGC 3 cut(s) 121, 896, 1121
Ksp22I TGATCA 1 cut(s) 634
Kzo9I GATC 8 cut(s) 154, 442, 502, 634, 883, 940, 1160, 1743
LmnI GCTCC 2 cut(s) 483, 675
LweI GCATC 5 cut(s) 170, 361, 544, 578, 1821
MaeI CTAG 3 cut(s) 180, 911, 1170
MaeII ACGT 1 cut(s) 184
MaeIII GTNAC 5 cut(s) 67, 225, 622, 1263, 1606
MalI GATC 8 cut(s) 156, 444, 504, 636, 885, 942, 1162, 1745
MbiI CCGCTC 1 cut(s) 976
MboI GATC 8 cut(s) 154, 442, 502, 634, 883, 940, 1160, 1743
MflI RGATCY 1 cut(s) 1160
MhlI GDGCHC 3 cut(s) 672, 1118, 1138
MlsI TGGCCA 1 cut(s) 1686
MluNI TGGCCA 1 cut(s) 1686
MlyI GAGTC 3 cut(s) 353, 431, 1007
Mox20I TGGCCA 1 cut(s) 1686
Mph1103I ATGCAT 1 cut(s) 1274
MroXI GAANNNNTTC 1 cut(s) 1107
MscI TGGCCA 1 cut(s) 1686
MseI TTAA 2 cut(s) 132, 597
Msp20I TGGCCA 1 cut(s) 1686
MspA1I CMGCKG 4 cut(s) 560, 796, 1618, 1712
MspCI CTTAAG 1 cut(s) 131
MspR9I CCNGG 2 cut(s) 302, 1788
MvaI CCWGG 2 cut(s) 302, 1788
MvnI CGCG 1 cut(s) 898
NcoI CCATGG 2 cut(s) 849, 1764
NdeII GATC 8 cut(s) 154, 442, 502, 634, 883, 940, 1160, 1743
NlaIV GGNNCC 1 cut(s) 28
NmeAIII GCCGAG 1 cut(s) 1558
NmuCI GTSAC 2 cut(s) 225, 1606
NsbI TGCGCA 1 cut(s) 1122
NsiI ATGCAT 1 cut(s) 1274
NspI RCATGY 2 cut(s) 650, 1858
PaeI GCATGC 1 cut(s) 650
PaeR7I CTCGAG 1 cut(s) 111
PagI TCATGA 2 cut(s) 1138, 1548
PdmI GAANNNNTTC 1 cut(s) 1107
PfeI GAWTC 6 cut(s) 104, 281, 380, 436, 653, 800
PflMI CCANNNNNTGG 1 cut(s) 1246
PfoI TCCNGGA 2 cut(s) 300, 1786
PleI GAGTC 3 cut(s) 352, 430, 1006
PpsI GAGTC 3 cut(s) 352, 430, 1006
Psp124BI GAGCTC 1 cut(s) 672
Psp6I CCWGG 2 cut(s) 300, 1786
PspEI GGTNACC 1 cut(s) 225
PspGI CCWGG 2 cut(s) 300, 1786
PspN4I GGNNCC 1 cut(s) 28
PspPI GGNCC 2 cut(s) 257, 1237
PspXI VCTCGAGB 1 cut(s) 111
PstI CTGCAG 3 cut(s) 606, 795, 1717
PstNI CAGNNNCTG 1 cut(s) 1318
PsuI RGATCY 1 cut(s) 1160
PvuII CAGCTG 4 cut(s) 560, 796, 1618, 1712
RsaI GTAC 3 cut(s) 39, 1515, 1808
RsaNI GTAC 3 cut(s) 38, 1514, 1807
SacI GAGCTC 1 cut(s) 672
SaqAI TTAA 2 cut(s) 132, 597
Sau3AI GATC 8 cut(s) 154, 442, 502, 634, 883, 940, 1160, 1743
Sau96I GGNCC 2 cut(s) 257, 1237
SchI GAGTC 3 cut(s) 353, 431, 1007
ScrFI CCNGG 2 cut(s) 302, 1788
SduI GDGCHC 3 cut(s) 672, 1118, 1138
SfaNI GCATC 5 cut(s) 170, 361, 544, 578, 1821
SfcI CTRYAG 3 cut(s) 602, 791, 1713
Sfr274I CTCGAG 1 cut(s) 111
SlaI CTCGAG 1 cut(s) 111
SmlI CTYRAG 7 cut(s) 111, 131, 524, 759, 932, 971, 1073
SmoI CTYRAG 7 cut(s) 111, 131, 524, 759, 932, 971, 1073
SphI GCATGC 1 cut(s) 650
SsiI CCGC 7 cut(s) 74, 124, 223, 898, 976, 1634, 1655
SspMI CTAG 3 cut(s) 180, 911, 1170
SstI GAGCTC 1 cut(s) 672
StyD4I CCNGG 2 cut(s) 300, 1786
StyI CCWWGG 3 cut(s) 564, 849, 1764
TaaI ACNGT 4 cut(s) 743, 817, 1759, 1806
TaiI ACGT 1 cut(s) 187
TaqI TCGA 3 cut(s) 112, 552, 1020
TatI WGTACW 1 cut(s) 1513
TauI GCSGC 2 cut(s) 126, 1637
TfiI GAWTC 6 cut(s) 104, 281, 380, 436, 653, 800
Tru1I TTAA 2 cut(s) 132, 597
Tru9I TTAA 2 cut(s) 132, 597
TscAI CASTG 3 cut(s) 1123, 1645, 1694
TseFI GTSAC 2 cut(s) 225, 1606
Tsp45I GTSAC 2 cut(s) 225, 1606
TspDTI ATGAA 9 cut(s) 737, 857, 1113, 1155, 1200, 1212, 1353, 1455, 1565
TspRI CASTG 3 cut(s) 1123, 1645, 1694
Van91I CCANNNNNTGG 1 cut(s) 1246
Vha464I CTTAAG 1 cut(s) 131
XapI RAATTY 3 cut(s) 904, 980, 1107
XceI RCATGY 2 cut(s) 650, 1858
XcmI CCANNNNNNNNNTGG 1 cut(s) 1645
XhoI CTCGAG 1 cut(s) 111
XmnI GAANNNNTTC 1 cut(s) 1107
XspI CTAG 3 cut(s) 180, 911, 1170
ZraI GACGTC 1 cut(s) 185
Zsp2I ATGCAT 1 cut(s) 1274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.