Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015006.1

Orthogroup ID

OG0002567

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2674

Gene Structure 2674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015006.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1894 bp

aaatggtgcctctgaagtacctcaacgggtatcccccactcaaagggtaactccgcctccaagggtatccccaactcaaaaggtgtcccctactcaaaaggactctcctcgagtagtgcgccgccaacttaagccaactgcattggagactgatcctgcatccacttcaagtcaagctagacgactatctaaagacagaagcccaaaagtcaatgagaggcggtcacccagaagtccattgcctgagaagaaaggctcaagtagagtatctgaattggaatctcagatttctcaactccaggaggacttgaaaaaagcaaacaacgagcttcagtcttccgagtcatgcaagaaacaagctcagcaagatgctgaggaatcaaagaagcaattactcgccttgtcatcaaagctcgaagaatctcagcagattcctgatctttgtatttctgaggaagctcgtgtaatcaagcttcaaaagatttcacaagaaagagagcaagcatggcagtcagagcttgaggctgtccagaaacagcactcagttgatgcagttgccttggcatctgccattgatgagattgagaggcttaaactgcagcttgaaatggtagctgtatctgaggctgatcagacaaagcatgcagaattagtcaatggagagctcctaagcttgaaaaaaaacttggcagaaactctttcacttgtagacaacatgaaaaacgaaatgaagggctgtaaggaagccgaagctcaagcacaggcacaggttagtcaaaccctgctgcagctggaatctgcaagaagaacagtggagacactcagttctgatggcatgaaggccatggaagcttacaactcagttgcttcagaattagatcagtcaaaagcacgggtaaattcactagaagaaattgttgccaaactcaaggctgacctgaataatgtaagcagcaacaatgaccttgagcgggaatttggagaaaagcacgagtctatgggaccaaatgagattgaggcagagctttacaccttgaagtctgaagtgaaacgactaaaatctactcttgagactgctgagaccaaataccatgaagaacaaattcagagcactgtgcagataagaagtgctcatgaactggtagagcagatgagatctgcttctagtcagagagagtgtgaactggaggatgaactggagaaaaccaaagctggtgttgaagcgttgaaggcccacctaatggataaggaaactgagttacaatgcatttcagaggaaaacgaggggctgaatttgaagcttcagaagagcctgtcatgccagagagagtatgaactggaaaaggaattgaaagaactgaaaaaacatgttgcagatttgaaggctcatttgatggataaagaaacagaattgcagagtatatcagaagaaaatgaaatgctgcgagtgaaagtcaataaaagcgaaatggacaagagcaaggcgaatgaggaggtagtggaggaagtagaagcggcaaggtgtgctgagagagaggctctcatgaagcttggaattgtgatggaggaggcagataagagcagcaagaaggtagcaagggtgactgaacagctagaggcggcacaggcagccggtgcagaattggaggcggaactgagaaggctaaaggtgcagtctgaccagtggaggaaagctgctgaggcagctgcagccatactttcctctgggaacggcaaggtcatggagagaactgtatccatggacagcaactatcatgttcctggaaagcttggctctccttactctgaagatatggatgatgatatgctgaagaagaaaaatgggaacatgctgaagaagataggtgtcttttggaagaagccacagaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

No domains found.

Protein Analysis

630

Amino Acids

70.64

Weight (kDa)

5.45

Isoelectric Point (pI)

52.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60210 AT5G60210 AT5G60210 AT5G60210 AT5G60210 AT5G60210
fragaria_vesca	FvH4_3g33632 FvH4_3g33632 FvH4_3g33632 FvH4_3g33632 FvH4_3g33632 FvH4_3g33632 FvH4_3g33632 FvH4_3g33632 FvH4_3g33632 FvH4_3g33632 FvH4_3g33632
malus_domestica	MD03G1110200.v1.1 MD11G1123900.v1.1
prunus_persica	Prupe.6G092800_v2.0.a1 Prupe.6G092800_v2.0.a1 Prupe.6G092800_v2.0.a1 Prupe.6G092800_v2.0.a1 Prupe.6G092800_v2.0.a1 Prupe.6G092800_v2.0.a1 Prupe.6G092800_v2.0.a1
pyrus_communis	pycom11g10440
rosa_chinensis	RchiOBHm_Chr5g0061061
rosa_laevigata	RLG00000035425
rosa_multiflora	Rmu_sc0015006.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019580
rosa_rugosa	Rorug05G0336600 Rorug05G0336700 Rorug05G0336800 Rorug05G0336900
rosa_samantha	Rh5AG398700 Rh5BG411600 Rh5CG436600 Rh5DG426000
rosa_wichuraiana	Rw5G037600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	6
AccB7I	CCANNNNNTGG	1 cut(s)	1241
AccBSI	CCGCTC	1 cut(s)	971
AccI	GTMKAC	1 cut(s)	709
AciI	CCGC	7 cut(s)	54, 122, 221, 971, 1515, 1620, 1650
AclWI	GGATC	1 cut(s)	147
AcsI	RAATTY	4 cut(s)	899, 975, 1102, 1292
AcuI	CTGAAG	8 cut(s)	34, 315, 853, 1063, 1287, 1828, 1851, 1875
AfaI	GTAC	1 cut(s)	19
AfiI	CCNNNNNNNGG	3 cut(s)	43, 971, 1241
AflII	CTTAAG	1 cut(s)	129
AflIII	ACRYGT	1 cut(s)	1367
AjnI	CCWGG	2 cut(s)	298, 1781
AjuI	GAANNNNNNNTTGG	2 cut(s)	669, 701
Alw21I	GWGCWC	3 cut(s)	667, 1113, 1133
Alw26I	GTCTC	4 cut(s)	141, 810, 1065, 1074
AlwI	GGATC	1 cut(s)	147
Ama87I	CYCGRG	1 cut(s)	109
AoxI	GGCC	2 cut(s)	841, 1231
ApoI	RAATTY	4 cut(s)	899, 975, 1102, 1292
Asp700I	GAANNNNTTC	1 cut(s)	1102
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	2 cut(s)	1002, 1232
AsuHPI	GGTGA	2 cut(s)	217, 1613
AvaI	CYCGRG	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	1002
BanI	GGYRCC	1 cut(s)	6
BanII	GRGCYC	1 cut(s)	667
BarI	GAAGNNNNNNTAC	2 cut(s)	457, 489
BauI	CACGAG	2 cut(s)	460, 990
BbsI	GAAGAC	1 cut(s)	328
Bbv12I	GWGCWC	3 cut(s)	667, 1113, 1133
BbvCI	CCTCAGC	2 cut(s)	373, 1699
BccI	CCATC	3 cut(s)	825, 1388, 1556
BceAI	ACGGC	1 cut(s)	1748
BciT130I	CCWGG	2 cut(s)	300, 1783
BciVI	GTATCC	3 cut(s)	41, 77, 1766
BclI	TGATCA	1 cut(s)	629
BcoDI	GTCTC	4 cut(s)	141, 810, 1065, 1074
BfaI	CTAG	4 cut(s)	178, 906, 1165, 1614
BfmI	CTRYAG	3 cut(s)	597, 786, 1708
BfrI	CTTAAG	1 cut(s)	129
BfuI	GTATCC	3 cut(s)	41, 77, 1766
BglII	AGATCT	1 cut(s)	1155
BlpI	GCTNAGC	1 cut(s)	361
Bme1390I	CCNGG	2 cut(s)	300, 1783
Bme18I	GGWCC	1 cut(s)	1002
BmeT110I	CYCGRG	1 cut(s)	109
BmgT120I	GGNCC	2 cut(s)	1002, 1232
BmiI	GGNNCC	2 cut(s)	8, 1003
BmrFI	CCNGG	2 cut(s)	300, 1783
BmsI	GCATC	4 cut(s)	168, 359, 539, 573
BpiI	GAAGAC	1 cut(s)	328
BplI	GAGNNNNNCTC	4 cut(s)	1523, 1555, 1525, 1557
BpmI	CTGGAG	3 cut(s)	282, 1206, 1218
Bpu10I	CCTNAGC	3 cut(s)	373, 669, 1699
Bpu1102I	GCTNAGC	1 cut(s)	361
BpuEI	CTTGAG	6 cut(s)	242, 540, 739, 912, 987, 1089
BsaI	GGTCTC	1 cut(s)	1074
BsaJI	CCNNGG	4 cut(s)	60, 559, 844, 1759
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 971, 1241
Bse118I	RCCGGY	1 cut(s)	1632
Bse1I	ACTGG	5 cut(s)	1144, 1189, 1201, 1342, 1682
Bse3DI	GCAATG	1 cut(s)	237
BseBI	CCWGG	2 cut(s)	300, 1783
BseDI	CCNNGG	4 cut(s)	60, 559, 844, 1759
BseGI	GGATG	3 cut(s)	159, 1196, 1823
BseLI	CCNNNNNNNGG	3 cut(s)	43, 971, 1241
BseMI	GCAATG	1 cut(s)	237
BseNI	ACTGG	5 cut(s)	1144, 1189, 1201, 1342, 1682
BseRI	GAGGAG	3 cut(s)	97, 1506, 1581
BsgI	GTGCAG	3 cut(s)	1137, 1657, 1692
BshFI	GGCC	2 cut(s)	843, 1233
BshNI	GGYRCC	1 cut(s)	6
BsiHKAI	GWGCWC	3 cut(s)	667, 1113, 1133
BsiHKCI	CYCGRG	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	1633
BslFI	GGGAC	2 cut(s)	71, 1015
BslI	CCNNNNNNNGG	3 cut(s)	43, 971, 1241
BsmAI	GTCTC	4 cut(s)	141, 810, 1065, 1074
BsmFI	GGGAC	2 cut(s)	71, 1015
BsnI	GGCC	2 cut(s)	843, 1233
Bso31I	GGTCTC	1 cut(s)	1074
BsoBI	CYCGRG	1 cut(s)	109
Bsp1286I	GDGCHC	3 cut(s)	667, 1113, 1133
Bsp143I	GATC	5 cut(s)	152, 437, 629, 878, 1155
Bsp1720I	GCTNAGC	1 cut(s)	361
Bsp19I	CCATGG	2 cut(s)	844, 1759
BspACI	CCGC	7 cut(s)	54, 122, 221, 971, 1515, 1620, 1650
BspANI	GGCC	2 cut(s)	843, 1233
BspHI	TCATGA	2 cut(s)	1133, 1543
BspLI	GGNNCC	2 cut(s)	8, 1003
BspMAI	CTGCAG	3 cut(s)	601, 790, 1712
BspPI	GGATC	1 cut(s)	147
BspQI	GCTCTTC	1 cut(s)	1302
BspT107I	GGYRCC	1 cut(s)	6
BspTI	CTTAAG	1 cut(s)	129
BspTNI	GGTCTC	1 cut(s)	1074
BsrBI	CCGCTC	1 cut(s)	971
BsrDI	GCAATG	1 cut(s)	237
BsrFI	RCCGGY	1 cut(s)	1632
BsrI	ACTGG	5 cut(s)	1144, 1189, 1201, 1342, 1682
BssAI	RCCGGY	1 cut(s)	1632
BssECI	CCNNGG	4 cut(s)	60, 559, 844, 1759
BssMI	GATC	5 cut(s)	152, 437, 629, 878, 1155
BssSI	CACGAG	2 cut(s)	460, 990
BssT1I	CCWWGG	4 cut(s)	60, 559, 844, 1759
Bst2BI	CACGAG	2 cut(s)	460, 990
Bst2UI	CCWGG	2 cut(s)	300, 1783
Bst4CI	ACNGT	3 cut(s)	812, 1115, 1754
Bst6I	CTCTTC	1 cut(s)	1302
BstAFI	CTTAAG	1 cut(s)	129
BstAPI	GCANNNNNTGC	2 cut(s)	1524, 1635
BstC8I	GCNNGC	2 cut(s)	502, 643
BstDSI	CCRYGG	2 cut(s)	844, 1759
BstEII	GGTNACC	1 cut(s)	223
BstF5I	GGATG	3 cut(s)	159, 1196, 1823
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	5 cut(s)	155, 440, 632, 881, 1158
BstMAI	GTCTC	4 cut(s)	141, 810, 1065, 1074
BstMBI	GATC	5 cut(s)	152, 437, 629, 878, 1155
BstNI	CCWGG	2 cut(s)	300, 1783
BstNSI	RCATGY	3 cut(s)	645, 1371, 1853
BstPI	GGTNACC	1 cut(s)	223
BstSCI	CCNGG	2 cut(s)	298, 1781
BstSFI	CTRYAG	3 cut(s)	597, 786, 1708
BstV2I	GAAGAC	1 cut(s)	328
BstX2I	RGATCY	1 cut(s)	1155
BstYI	RGATCY	1 cut(s)	1155
BsuI	GTATCC	3 cut(s)	41, 77, 1766
BsuRI	GGCC	2 cut(s)	843, 1233
BtgI	CCRYGG	2 cut(s)	844, 1759
BtsCI	GGATG	3 cut(s)	159, 1196, 1823
BtsIMutI	CAGTG	3 cut(s)	817, 1111, 1689
Cac8I	GCNNGC	2 cut(s)	502, 643
CciI	TCATGA	2 cut(s)	1133, 1543
CfoI	GCGC	1 cut(s)	121
Cfr10I	RCCGGY	1 cut(s)	1632
Cfr13I	GGNCC	2 cut(s)	1002, 1232
Csp6I	GTAC	1 cut(s)	18
CviQI	GTAC	1 cut(s)	18
DpnI	GATC	5 cut(s)	154, 439, 631, 880, 1157
DpnII	GATC	5 cut(s)	152, 437, 629, 878, 1155
Eam1104I	CTCTTC	1 cut(s)	1302
EarI	CTCTTC	1 cut(s)	1302
EciI	GGCGGA	2 cut(s)	43, 1665
Ecl136II	GAGCTC	1 cut(s)	665
Eco130I	CCWWGG	4 cut(s)	60, 559, 844, 1759
Eco24I	GRGCYC	1 cut(s)	667
Eco31I	GGTCTC	1 cut(s)	1074
Eco47I	GGWCC	1 cut(s)	1002
Eco53kI	GAGCTC	1 cut(s)	665
Eco57I	CTGAAG	8 cut(s)	34, 315, 853, 1063, 1287, 1828, 1851, 1875
Eco88I	CYCGRG	1 cut(s)	109
Eco91I	GGTNACC	1 cut(s)	223
EcoICRI	GAGCTC	1 cut(s)	665
EcoO65I	GGTNACC	1 cut(s)	223
EcoRII	CCWGG	2 cut(s)	298, 1781
EcoT14I	CCWWGG	4 cut(s)	60, 559, 844, 1759
EcoT22I	ATGCAT	1 cut(s)	1269
EcoT38I	GRGCYC	1 cut(s)	667
ErhI	CCWWGG	4 cut(s)	60, 559, 844, 1759
FaqI	GGGAC	2 cut(s)	71, 1015
FauI	CCCGC	1 cut(s)	964
FbaI	TGATCA	1 cut(s)	629
FblI	GTMKAC	1 cut(s)	709
FokI	GGATG	3 cut(s)	146, 1203, 1830
FriOI	GRGCYC	1 cut(s)	667
FspBI	CTAG	4 cut(s)	178, 906, 1165, 1614
GlaI	GCGC	1 cut(s)	120
GsuI	CTGGAG	3 cut(s)	282, 1206, 1218
HaeIII	GGCC	2 cut(s)	843, 1233
HapII	CCGG	1 cut(s)	1633
HhaI	GCGC	1 cut(s)	121
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HindIII	AAGCTT	6 cut(s)	471, 671, 850, 1299, 1548, 1788
HinfI	GANTC	8 cut(s)	102, 279, 342, 378, 420, 431, 795, 993
HpaII	CCGG	1 cut(s)	1633
HphI	GGTGA	2 cut(s)	217, 1613
Hpy166II	GTNNAC	2 cut(s)	710, 1182
Hpy188III	TCNNGA	5 cut(s)	435, 530, 1068, 1134, 1544
Hpy8I	GTNNAC	2 cut(s)	710, 1182
HpyAV	CCTTC	6 cut(s)	725, 833, 1223, 1376, 1583, 1654
HpyCH4III	ACNGT	3 cut(s)	812, 1115, 1754
HspAI	GCGC	1 cut(s)	119
Ksp22I	TGATCA	1 cut(s)	629
Kzo9I	GATC	5 cut(s)	152, 437, 629, 878, 1155
LguI	GCTCTTC	1 cut(s)	1302
LmnI	GCTCC	1 cut(s)	670
LweI	GCATC	4 cut(s)	168, 359, 539, 573
MaeI	CTAG	4 cut(s)	178, 906, 1165, 1614
MaeIII	GTNAC	4 cut(s)	47, 223, 1258, 1601
MalI	GATC	5 cut(s)	154, 439, 631, 880, 1157
MbiI	CCGCTC	1 cut(s)	971
MboI	GATC	5 cut(s)	152, 437, 629, 878, 1155
MflI	RGATCY	1 cut(s)	1155
MhlI	GDGCHC	3 cut(s)	667, 1113, 1133
MlyI	GAGTC	3 cut(s)	96, 351, 1002
Mph1103I	ATGCAT	1 cut(s)	1269
MroXI	GAANNNNTTC	1 cut(s)	1102
MseI	TTAA	2 cut(s)	130, 592
MspA1I	CMGCKG	2 cut(s)	791, 1707
MspCI	CTTAAG	1 cut(s)	129
MspI	CCGG	1 cut(s)	1633
MspR9I	CCNGG	2 cut(s)	300, 1783
MvaI	CCWGG	2 cut(s)	300, 1783
NcoI	CCATGG	2 cut(s)	844, 1759
NdeII	GATC	5 cut(s)	152, 437, 629, 878, 1155
NlaIV	GGNNCC	2 cut(s)	8, 1003
NmuCI	GTSAC	2 cut(s)	223, 1601
NsiI	ATGCAT	1 cut(s)	1269
NspI	RCATGY	3 cut(s)	645, 1371, 1853
PaeI	GCATGC	1 cut(s)	645
PaeR7I	CTCGAG	1 cut(s)	109
PagI	TCATGA	2 cut(s)	1133, 1543
PciI	ACATGT	1 cut(s)	1367
PciSI	GCTCTTC	1 cut(s)	1302
PdmI	GAANNNNTTC	1 cut(s)	1102
PfeI	GAWTC	5 cut(s)	279, 378, 420, 431, 795
PflMI	CCANNNNNTGG	1 cut(s)	1241
PfoI	TCCNGGA	2 cut(s)	298, 1781
PleI	GAGTC	3 cut(s)	96, 350, 1001
PpsI	GAGTC	3 cut(s)	96, 350, 1001
PscI	ACATGT	1 cut(s)	1367
Psp124BI	GAGCTC	1 cut(s)	667
Psp6I	CCWGG	2 cut(s)	298, 1781
PspEI	GGTNACC	1 cut(s)	223
PspGI	CCWGG	2 cut(s)	298, 1781
PspN4I	GGNNCC	2 cut(s)	8, 1003
PspPI	GGNCC	2 cut(s)	1002, 1232
PspXI	VCTCGAGB	1 cut(s)	109
PstI	CTGCAG	3 cut(s)	601, 790, 1712
PsuI	RGATCY	1 cut(s)	1155
PvuII	CAGCTG	2 cut(s)	791, 1707
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
SacI	GAGCTC	1 cut(s)	667
SapI	GCTCTTC	1 cut(s)	1302
SaqAI	TTAA	2 cut(s)	130, 592
Sau3AI	GATC	5 cut(s)	152, 437, 629, 878, 1155
Sau96I	GGNCC	2 cut(s)	1002, 1232
SchI	GAGTC	3 cut(s)	96, 351, 1002
ScrFI	CCNGG	2 cut(s)	300, 1783
SduI	GDGCHC	3 cut(s)	667, 1113, 1133
SfaNI	GCATC	4 cut(s)	168, 359, 539, 573
SfcI	CTRYAG	3 cut(s)	597, 786, 1708
Sfr274I	CTCGAG	1 cut(s)	109
SinI	GGWCC	1 cut(s)	1002
SlaI	CTCGAG	1 cut(s)	109
SmlI	CTYRAG	8 cut(s)	109, 129, 257, 519, 754, 927, 966, 1068
SmoI	CTYRAG	8 cut(s)	109, 129, 257, 519, 754, 927, 966, 1068
SphI	GCATGC	1 cut(s)	645
SsiI	CCGC	7 cut(s)	54, 122, 221, 971, 1515, 1620, 1650
SspMI	CTAG	4 cut(s)	178, 906, 1165, 1614
SstI	GAGCTC	1 cut(s)	667
StyD4I	CCNGG	2 cut(s)	298, 1781
StyI	CCWWGG	4 cut(s)	60, 559, 844, 1759
TaaI	ACNGT	3 cut(s)	812, 1115, 1754
TaqI	TCGA	2 cut(s)	110, 415
TauI	GCSGC	3 cut(s)	124, 1518, 1623
TfiI	GAWTC	5 cut(s)	279, 378, 420, 431, 795
Tru1I	TTAA	2 cut(s)	130, 592
Tru9I	TTAA	2 cut(s)	130, 592
TscAI	CASTG	3 cut(s)	817, 1118, 1689
TseFI	GTSAC	2 cut(s)	223, 1601
Tsp45I	GTSAC	2 cut(s)	223, 1601
TspDTI	ATGAA	9 cut(s)	732, 744, 852, 1108, 1150, 1207, 1348, 1450, 1560
TspRI	CASTG	3 cut(s)	817, 1118, 1689
Van91I	CCANNNNNTGG	1 cut(s)	1241
Vha464I	CTTAAG	1 cut(s)	129
VpaK11BI	GGWCC	1 cut(s)	1002
XapI	RAATTY	4 cut(s)	899, 975, 1102, 1292
XceI	RCATGY	3 cut(s)	645, 1371, 1853
XhoI	CTCGAG	1 cut(s)	109
XmiI	GTMKAC	1 cut(s)	709
XmnI	GAANNNNTTC	1 cut(s)	1102
XspI	CTAG	4 cut(s)	178, 906, 1165, 1614
Zsp2I	ATGCAT	1 cut(s)	1269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.