Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002567

Physical Location & Seq

Genomic Coordinates Reverse (-)

6399291 .. 6405343

Gene Structure 6053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G092800.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1890 bp

ATGCAGACCCCAAAAGCAAGGAGTGGCTCCTCTGAAGTGCCTCAAAGGGTCTCTCCACCTCAAAGGGTCTCCCCTCGAGTTGCTCGCCAACTCAGGCCAACTGCATTGGAGACTGATTCTGCATCTACTTCAAGTCAAGCTAGAAGAATATCTAAAGACAAAAGCCCAAAAGTGAATGAGCGGAGATCACCCAGAAGTCCATTGCCTGAGAAGAAGGGCTCTAGTAGAATATCTGAATTGGAATCTCAGATTTCTCAGCTCCAGGAAGATCTGAAAAAGGCAAAGGACCAGTTGCAATCTTCTGAATCATGCAAGGAAAAAGCTCAGCAAGATGCTGAGGAGTCCAAGAAGCAATTACTGTCCTTGTCTTCAAAGCTCGAAGAATCCCAGCTGCAGCTTCCGGAGCTTTCTCTTTCTGAGGAAGCTCGTGTTATCAAGCTTCACAAGATATCACAAGAAAAAGATCGAGCATGGCAGGTCGAGCTTGAGGCTGTGCGGAAGCAGCACTCAGTTGACTCAACTGCCTTGGCATCTGCCATTGGTGAGATTGAGAGTCTTAAGGTGCAGCTTGAATCGCTAGCTGCATCCGAGGCTGAGCAGACAAAGCATGCAGAATCAGCAAATGCCGAGCTCCAAAGCTTGAAAGGAAACTTGGCAGAAACACTTTCTCTTTTGGAGAACATGAAGAACCAATTAAAGGACAGTAAGGAATCAGAAGCTCACGCACAAGCACTGGTTGGTGAAACCCTACTGCAGTTGGAATCTGCAAGAACAACAGTGGAGGCACTCAGGTTAGATGGCATGAAATCAACAGAAGCTTACAACTCCATTGCTTCAGAGTTAGATCAGTCAAAGGCGCATATAAATTTACTAGAAGAACTTGTTAGCAAACTCAAGGCTGACCTAATTATTGCAAGCGGCAATGTTTCGCAAAATCAGACTGGTGAACATGACCCTCAGCAGGAATTTGGAGAAAAGCGAGAGACTGGGGAATCAAACCAGACTGAGGCAGAGCTTCACACCTTGAAGTCTGAAGTAAAACGGCTAAGATCTACTCTTGAAACCGCTGAGACCAAATACCATGAAGAACAAACTCAGAGCACAGTGCAGCTAAGAAGTGCTAATGAACTGGTGGAACAGATAAAATTTACATCTAGTCAGAGAGAGGGGGAACTGGAGGCAGAACTGAAGAAAACCAAAGCTGAAATTGAAGAGTTGAAGGCACACCTGATGGATAAGGAAACTGAACTGCAATGCATTTCAGAGGAAAATGAGGGGCTGAATTCCAAACTTGTGAAGAGCCTGTCATGCCAGAGAGAGTATGAACTGGAAAAGGAATTGAAAGAACTGAAAGGGCATGTTGCAGATTTGAAGGCTCATTTAATGGATAAGGAAACAGAACTACAGAGTATATCTGAAGAGAATGACATGCTGAGATTGGAAATCAACAAAATCCAAATGGACAAGAGTAAAGTAAACAATGAGGTAGTGGCTGAAGTAGAGGCAGCAAGGTGTGCGGAGCGAGAGGCTCTCACGAAGCTTGGGATTGTGATGGAGGAGGCAGATAAGAGCAACAAGAGGGTAGCAAGGGTGGCTGAACAGCTGGAGGCAGCTCAAGCCGCCAATGCAGAAATGGAGGCAGAACTGAGAAGGCTAAAAGTGCAGTCCGACCAGTGGAGGAAGGCTGCTGAAGCAGCTGCAGCCATGCTTTCAGCCGGAAATAATGGCAAGCTCATGGACAGAACTGCATCTTTGGACAGCAGCTTTAATCATGTTACTGGGAAGTTTGGCTCACCTTACTCTGAAGATATGGATGATGATTTACTGAAGAAGAAAAATGGGAACATGCTAAAGAAGATTGGAGTCTTTTGGAAGAAGCCGCAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

No domains found.

Protein Analysis

630

Amino Acids

70.23

Weight (kDa)

5.5

Isoelectric Point (pI)

52.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60210 AT5G60210 AT5G60210 AT5G60210 AT5G60210 AT5G60210
fragaria_vesca	FvH4_3g33632 FvH4_3g33632 FvH4_3g33632 FvH4_3g33632 FvH4_3g33632 FvH4_3g33632 FvH4_3g33632 FvH4_3g33632 FvH4_3g33632 FvH4_3g33632 FvH4_3g33632
malus_domestica	MD03G1110200.v1.1 MD11G1123900.v1.1
prunus_persica	Prupe.6G092800_v2.0.a1 Prupe.6G092800_v2.0.a1 Prupe.6G092800_v2.0.a1 Prupe.6G092800_v2.0.a1 Prupe.6G092800_v2.0.a1 Prupe.6G092800_v2.0.a1 Prupe.6G092800_v2.0.a1
pyrus_communis	pycom11g10440
rosa_chinensis	RchiOBHm_Chr5g0061061
rosa_laevigata	RLG00000035425
rosa_multiflora	Rmu_sc0015006.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019580
rosa_rugosa	Rorug05G0336600 Rorug05G0336700 Rorug05G0336800 Rorug05G0336900
rosa_samantha	Rh5AG398700 Rh5BG411600 Rh5CG436600 Rh5DG426000
rosa_wichuraiana	Rw5G037600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	466
AccBSI	CCGCTC	1 cut(s)	181
AccIII	TCCGGA	1 cut(s)	400
AciI	CCGC	7 cut(s)	181, 496, 918, 1065, 1517, 1620, 1880
AcsI	RAATTY	4 cut(s)	865, 965, 1145, 1282
AcuI	CTGAAG	9 cut(s)	54, 819, 1053, 1208, 1437, 1515, 1710, 1824, 1847
AfiI	CCNNNNNNNGG	4 cut(s)	697, 961, 1006, 1674
AflII	CTTAAG	1 cut(s)	557
AjnI	CCWGG	1 cut(s)	261
AjuI	GAANNNNNNNTTGG	2 cut(s)	635, 667
Alw21I	GWGCWC	2 cut(s)	633, 1103
Alw26I	GTCTC	5 cut(s)	55, 73, 104, 977, 1064
Ama87I	CYCGRG	1 cut(s)	75
Aor13HI	TCCGGA	1 cut(s)	400
AoxI	GGCC	1 cut(s)	95
ApoI	RAATTY	4 cut(s)	865, 965, 1145, 1282
AspLEI	GCGC	1 cut(s)	859
AspS9I	GGNCC	1 cut(s)	286
AsuHPI	GGTGA	5 cut(s)	180, 554, 752, 956, 1785
AsuNHI	GCTAGC	1 cut(s)	577
AvaI	CYCGRG	1 cut(s)	75
AvaII	GGWCC	1 cut(s)	286
BanII	GRGCYC	2 cut(s)	221, 633
BauI	CACGAG	1 cut(s)	426
BbsI	GAAGAC	1 cut(s)	360
Bbv12I	GWGCWC	2 cut(s)	633, 1103
BbvCI	CCTCAGC	2 cut(s)	336, 957
BccI	CCATC	3 cut(s)	791, 1225, 1546
BceAI	ACGGC	1 cut(s)	1058
BciT130I	CCWGG	1 cut(s)	263
BcoDI	GTCTC	5 cut(s)	55, 73, 104, 977, 1064
BfaI	CTAG	5 cut(s)	141, 222, 578, 872, 1155
BfmI	CTRYAG	4 cut(s)	392, 752, 1403, 1698
BfrI	CTTAAG	1 cut(s)	557
BfuAI	ACCTGC	1 cut(s)	466
BglII	AGATCT	2 cut(s)	268, 1049
BlpI	GCTNAGC	2 cut(s)	324, 594
Bme1390I	CCNGG	1 cut(s)	263
Bme18I	GGWCC	1 cut(s)	286
BmeT110I	CYCGRG	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	286
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	263
BmrI	ACTGGG	2 cut(s)	996, 1788
BmsI	GCATC	5 cut(s)	131, 322, 539, 593, 1757
BmtI	GCTAGC	1 cut(s)	581
BmuI	ACTGGG	2 cut(s)	996, 1788
BpiI	GAAGAC	1 cut(s)	360
BplI	GAGNNNNNCTC	2 cut(s)	1515, 1547
BpmI	CTGGAG	3 cut(s)	245, 1196, 1625
Bpu10I	CCTNAGC	2 cut(s)	336, 957
Bpu1102I	GCTNAGC	2 cut(s)	324, 594
BpuEI	CTTGAG	3 cut(s)	506, 878, 1599
BsaI	GGTCTC	3 cut(s)	55, 73, 1064
BsaJI	CCNNGG	2 cut(s)	525, 588
BsaWI	WCCGGW	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	4 cut(s)	697, 961, 1006, 1674
Bse1I	ACTGG	9 cut(s)	289, 738, 946, 991, 1134, 1179, 1332, 1672, 1783
Bse3DI	GCAATG	4 cut(s)	200, 828, 928, 1259
BseAI	TCCGGA	1 cut(s)	400
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	2 cut(s)	525, 588
BseGI	GGATG	2 cut(s)	584, 1819
BseLI	CCNNNNNNNGG	4 cut(s)	697, 961, 1006, 1674
BseMI	GCAATG	4 cut(s)	200, 828, 928, 1259
BseNI	ACTGG	9 cut(s)	289, 738, 946, 991, 1134, 1179, 1332, 1672, 1783
BseRI	GAGGAG	3 cut(s)	19, 353, 1571
BseYI	CCCAGC	1 cut(s)	387
BsgI	GTGCAG	3 cut(s)	584, 1127, 1682
BshFI	GGCC	1 cut(s)	97
BsiHKAI	GWGCWC	2 cut(s)	633, 1103
BsiHKCI	CYCGRG	1 cut(s)	75
BsiSI	CCGG	2 cut(s)	401, 1716
BslI	CCNNNNNNNGG	4 cut(s)	697, 961, 1006, 1674
BsmAI	GTCTC	5 cut(s)	55, 73, 104, 977, 1064
BsnI	GGCC	1 cut(s)	97
Bso31I	GGTCTC	3 cut(s)	55, 73, 1064
BsoBI	CYCGRG	1 cut(s)	75
Bsp1286I	GDGCHC	3 cut(s)	221, 633, 1103
Bsp13I	TCCGGA	1 cut(s)	400
Bsp143I	GATC	5 cut(s)	185, 268, 463, 844, 1049
Bsp1720I	GCTNAGC	2 cut(s)	324, 594
BspACI	CCGC	7 cut(s)	181, 496, 918, 1065, 1517, 1620, 1880
BspANI	GGCC	1 cut(s)	97
BspEI	TCCGGA	1 cut(s)	400
BspLI	GGNNCC	1 cut(s)	28
BspMAI	CTGCAG	3 cut(s)	396, 756, 1702
BspMI	ACCTGC	1 cut(s)	466
BspOI	GCTAGC	1 cut(s)	581
BspQI	GCTCTTC	1 cut(s)	1292
BspTI	CTTAAG	1 cut(s)	557
BspTNI	GGTCTC	3 cut(s)	55, 73, 1064
BsrBI	CCGCTC	1 cut(s)	181
BsrDI	GCAATG	4 cut(s)	200, 828, 928, 1259
BsrI	ACTGG	9 cut(s)	289, 738, 946, 991, 1134, 1179, 1332, 1672, 1783
BssECI	CCNNGG	2 cut(s)	525, 588
BssMI	GATC	5 cut(s)	185, 268, 463, 844, 1049
BssSI	CACGAG	1 cut(s)	426
BssT1I	CCWWGG	1 cut(s)	525
Bst2BI	CACGAG	1 cut(s)	426
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	4 cut(s)	360, 704, 778, 1105
Bst6I	CTCTTC	3 cut(s)	1206, 1292, 1413
BstAFI	CTTAAG	1 cut(s)	557
BstAPI	GCANNNNNTGC	1 cut(s)	1514
BstC8I	GCNNGC	5 cut(s)	85, 579, 609, 916, 1730
BstF5I	GGATG	2 cut(s)	584, 1819
BstHHI	GCGC	1 cut(s)	859
BstKTI	GATC	5 cut(s)	188, 271, 466, 847, 1052
BstMAI	GTCTC	5 cut(s)	55, 73, 104, 977, 1064
BstMBI	GATC	5 cut(s)	185, 268, 463, 844, 1049
BstNI	CCWGG	1 cut(s)	263
BstNSI	RCATGY	4 cut(s)	611, 1361, 1432, 1849
BstSCI	CCNGG	1 cut(s)	261
BstSFI	CTRYAG	4 cut(s)	392, 752, 1403, 1698
BstV2I	GAAGAC	1 cut(s)	360
BstX2I	RGATCY	2 cut(s)	268, 1049
BstYI	RGATCY	2 cut(s)	268, 1049
BsuRI	GGCC	1 cut(s)	97
BtsCI	GGATG	2 cut(s)	584, 1819
BtsIMutI	CAGTG	4 cut(s)	731, 783, 1110, 1679
BveI	ACCTGC	1 cut(s)	466
Cac8I	GCNNGC	5 cut(s)	85, 579, 609, 916, 1730
CfoI	GCGC	1 cut(s)	859
Cfr13I	GGNCC	1 cut(s)	286
DpnI	GATC	5 cut(s)	187, 270, 465, 846, 1051
DpnII	GATC	5 cut(s)	185, 268, 463, 844, 1049
Eam1104I	CTCTTC	3 cut(s)	1206, 1292, 1413
EarI	CTCTTC	3 cut(s)	1206, 1292, 1413
Ecl136II	GAGCTC	1 cut(s)	631
Eco130I	CCWWGG	1 cut(s)	525
Eco24I	GRGCYC	2 cut(s)	221, 633
Eco31I	GGTCTC	3 cut(s)	55, 73, 1064
Eco32I	GATATC	1 cut(s)	450
Eco47I	GGWCC	1 cut(s)	286
Eco53kI	GAGCTC	1 cut(s)	631
Eco57I	CTGAAG	9 cut(s)	54, 819, 1053, 1208, 1437, 1515, 1710, 1824, 1847
Eco88I	CYCGRG	1 cut(s)	75
EcoICRI	GAGCTC	1 cut(s)	631
EcoRI	GAATTC	1 cut(s)	1282
EcoRII	CCWGG	1 cut(s)	261
EcoRV	GATATC	1 cut(s)	450
EcoT14I	CCWWGG	1 cut(s)	525
EcoT22I	ATGCAT	1 cut(s)	1259
EcoT38I	GRGCYC	2 cut(s)	221, 633
ErhI	CCWWGG	1 cut(s)	525
FokI	GGATG	2 cut(s)	571, 1826
FriOI	GRGCYC	2 cut(s)	221, 633
FspBI	CTAG	5 cut(s)	141, 222, 578, 872, 1155
GlaI	GCGC	1 cut(s)	858
GsaI	CCCAGC	1 cut(s)	391
GsuI	CTGGAG	3 cut(s)	245, 1196, 1625
HaeIII	GGCC	1 cut(s)	97
HapII	CCGG	2 cut(s)	401, 1716
HhaI	GCGC	1 cut(s)	859
Hin6I	GCGC	1 cut(s)	857
HinP1I	GCGC	1 cut(s)	857
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HindIII	AAGCTT	4 cut(s)	437, 637, 816, 1538
HpaII	CCGG	2 cut(s)	401, 1716
HphI	GGTGA	5 cut(s)	180, 554, 752, 956, 1785
Hpy166II	GTNNAC	3 cut(s)	514, 947, 1477
Hpy188III	TCNNGA	3 cut(s)	401, 1058, 1534
Hpy8I	GTNNAC	3 cut(s)	514, 947, 1477
HpyAV	CCTTC	5 cut(s)	208, 1213, 1366, 1644, 1675
HpyCH4III	ACNGT	4 cut(s)	360, 704, 778, 1105
HspAI	GCGC	1 cut(s)	857
Kpn2I	TCCGGA	1 cut(s)	400
Kzo9I	GATC	5 cut(s)	185, 268, 463, 844, 1049
LguI	GCTCTTC	1 cut(s)	1292
LmnI	GCTCC	5 cut(s)	32, 264, 403, 636, 1519
LweI	GCATC	5 cut(s)	131, 322, 539, 593, 1757
MaeI	CTAG	5 cut(s)	141, 222, 578, 872, 1155
MaeIII	GTNAC	1 cut(s)	1774
MalI	GATC	5 cut(s)	187, 270, 465, 846, 1051
MbiI	CCGCTC	1 cut(s)	181
MboI	GATC	5 cut(s)	185, 268, 463, 844, 1049
MflI	RGATCY	2 cut(s)	268, 1049
MhlI	GDGCHC	3 cut(s)	221, 633, 1103
MlyI	GAGTC	4 cut(s)	350, 509, 562, 1872
MmeI	TCCRAC	2 cut(s)	738, 1692
Mph1103I	ATGCAT	1 cut(s)	1259
MroI	TCCGGA	1 cut(s)	400
MseI	TTAA	4 cut(s)	558, 695, 1382, 1767
MspA1I	CMGCKG	4 cut(s)	391, 1067, 1603, 1697
MspCI	CTTAAG	1 cut(s)	557
MspI	CCGG	2 cut(s)	401, 1716
MspR9I	CCNGG	1 cut(s)	263
MvaI	CCWGG	1 cut(s)	263
NdeII	GATC	5 cut(s)	185, 268, 463, 844, 1049
NheI	GCTAGC	1 cut(s)	577
NlaIV	GGNNCC	1 cut(s)	28
NmeAIII	GCCGAG	1 cut(s)	652
NsiI	ATGCAT	1 cut(s)	1259
NspI	RCATGY	4 cut(s)	611, 1361, 1432, 1849
PaeI	GCATGC	1 cut(s)	611
PaeR7I	CTCGAG	1 cut(s)	75
PciSI	GCTCTTC	1 cut(s)	1292
PfeI	GAWTC	9 cut(s)	116, 242, 305, 383, 572, 614, 710, 761, 992
PfoI	TCCNGGA	1 cut(s)	261
PleI	GAGTC	4 cut(s)	349, 509, 561, 1871
PpsI	GAGTC	4 cut(s)	349, 509, 561, 1871
Psp124BI	GAGCTC	1 cut(s)	633
Psp6I	CCWGG	1 cut(s)	261
PspFI	CCCAGC	1 cut(s)	387
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	286
PspXI	VCTCGAGB	1 cut(s)	75
PstI	CTGCAG	3 cut(s)	396, 756, 1702
PsuI	RGATCY	2 cut(s)	268, 1049
PvuII	CAGCTG	3 cut(s)	391, 1603, 1697
SacI	GAGCTC	1 cut(s)	633
SapI	GCTCTTC	1 cut(s)	1292
SaqAI	TTAA	4 cut(s)	558, 695, 1382, 1767
Sau3AI	GATC	5 cut(s)	185, 268, 463, 844, 1049
Sau96I	GGNCC	1 cut(s)	286
SchI	GAGTC	4 cut(s)	350, 509, 562, 1872
ScrFI	CCNGG	1 cut(s)	263
SduI	GDGCHC	3 cut(s)	221, 633, 1103
SfaNI	GCATC	5 cut(s)	131, 322, 539, 593, 1757
SfcI	CTRYAG	4 cut(s)	392, 752, 1403, 1698
Sfr274I	CTCGAG	1 cut(s)	75
SinI	GGWCC	1 cut(s)	286
SlaI	CTCGAG	1 cut(s)	75
SmlI	CTYRAG	5 cut(s)	75, 485, 557, 893, 1614
SmoI	CTYRAG	5 cut(s)	75, 485, 557, 893, 1614
SphI	GCATGC	1 cut(s)	611
SsiI	CCGC	7 cut(s)	181, 496, 918, 1065, 1517, 1620, 1880
SspMI	CTAG	5 cut(s)	141, 222, 578, 872, 1155
SstI	GAGCTC	1 cut(s)	633
StyD4I	CCNGG	1 cut(s)	261
StyI	CCWWGG	1 cut(s)	525
TaaI	ACNGT	4 cut(s)	360, 704, 778, 1105
TaqI	TCGA	4 cut(s)	76, 378, 466, 480
TauI	GCSGC	3 cut(s)	921, 1622, 1882
TfiI	GAWTC	9 cut(s)	116, 242, 305, 383, 572, 614, 710, 761, 992
Tru1I	TTAA	4 cut(s)	558, 695, 1382, 1767
Tru9I	TTAA	4 cut(s)	558, 695, 1382, 1767
TscAI	CASTG	4 cut(s)	738, 783, 1110, 1679
TspDTI	ATGAA	5 cut(s)	698, 818, 1098, 1140, 1338
TspRI	CASTG	4 cut(s)	738, 783, 1110, 1679
Vha464I	CTTAAG	1 cut(s)	557
VpaK11BI	GGWCC	1 cut(s)	286
XapI	RAATTY	4 cut(s)	865, 965, 1145, 1282
XceI	RCATGY	4 cut(s)	611, 1361, 1432, 1849
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1630
XhoI	CTCGAG	1 cut(s)	75
XspI	CTAG	5 cut(s)	141, 222, 578, 872, 1155
Zsp2I	ATGCAT	1 cut(s)	1259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.