MD03G1110200.v1.1

Interactor of constitutive active ROPs

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
9590653 .. 9596123
5471 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1110200.v1.1.491

Sequence Viewer

Length: 1902 bp
ATGCAGACCCCTAAAGCAAGAAGTGGCTCCTCTGAAGTGCCTCAAAGGGTTTCTCCTCCTCAAAAGGTGTCTCCTTCCCAAAAGGTCTCCCCTCGAGTTGCTCGCCAACTCAGGCCAACTGCATTGGAGACTACTGACTCTGCATCTACTTCAAGTCAAGCTAAAAGAGCAACTAAAGATAGAAGCCCAAAAGTCACTGAGCGTCGGTCACCCAGAAGTCCAGTGTTTGAGAAGAAGGGCCCAAGTAGAATATCCGAGTTGCAATCTCAGATTTCTCAGCTCCAAGAGGATCTGAAGAAAGCAAAGAACGAGCTGCAATCTTCTGAATCATGCAAGAAGCAAGCTCAGCAAGATGCCGAGGAGTCCAAGAAGCAAGTACTGGCCTTGTCCTCAAAGCTCGAAGAATCCCAGCTGCTGCTTCCTGAGCTTTCTATTTCTGAGGAAGCTCGTGTTATCAAGCTCCACAAGATTTCACAAGAAAGAGACCAAGCGTGGCAGTCCGAGCTTGAGACTGTGCAGAAGCAGCACTCAGTTGACTCAGCTGCCTTGGCATCTGCTGTTGATGAGATTGAGAGGCTTAAGGCGCAGCTTGAAGTGGTGGCTGCATCTGAGGCTGATCAGATAAAGCATGCAGAATCATCAAATGCTCAGCTTCAAATCTTGAAAGAAAACTTGGCTGAAACACTTTCTCTTGTGGAGAACATGAAAACACAATTAAAGGACTCTAAGGAATCCGAGGCTCAAGCACAAGCAATGGTTAGTGAAACCCTACTGCAGCTGGAGTCCGCGAGAACAACAATGGAGGCACTCAGGTTAGATGGCACGAAATCGACAGAAGCTTACAAGTCCATTGCTTCAGAGTTAGATCAGTCAAAGGCACGTGTAAATTTACTAGAAGAACTTGTTGGCAAACTCAAGGCTGACCTGATTAATGCAAGCAGCAACGTTTCACAAAATCAGGCTGGTAAAAATGAGCTTCAGCAAAAATTTGAAGAAAAGCAAGAGACTATGGAGCCAAACCAGACTGAGGCAGAACTTCAAGACTTGAAGTCCGAAGTGGCACGGCTAAGATCTAGTCTTGAAACTGCTGAGACCAAATACCATGAAGAACAAATTCAGAGCACCGTGCAGCTAAGAAGTGCTCATGAACTGGTGGAGCAGATAAAATCTGCATCTAGTCAGAGAGAGGGGGAACTGGAAGCATTATTGACGAAAACCAAGGCTGAAGTTGAAGAGTTGAAGGCCCACCTGATGGACAAGGAAACTGAATTACAAGGCATTACAGAGGAGAATGAGGGGCTCAATTCGAAGCTTGAAAAGAGCCTGTCATGCCAGAGAGAGTATGAACTGGAAAAGGAATTGAAAGAACTAAAAGGGCATGTTACGGATTTAAAGGCTTATTTGATGGACAAGGAAACGGAACTGCAGAGTATTTCAGAAGAGAATGAAACGCTGAGGTTGGAAATCAACAAAAGCCAAAGTAAAGCTAACGATGAGGTAGAGGCAGAAGTAGAGGCTGCAAAGTGTGCAGAGCGAGAGGCTCTCGTGAAGCTTGGCATTGTGATGGAAGAGGCAGACAAGAGCAGCAAGAAGGTAGCAAGAGTGGCGGAACAGCTGGAGGCAGCACAGGCAGCCAATGCAGAAATGGAGGCGGAACTAAGAAGGTTAAAGGTGCAGTCCAACCAGTGGAGGAAGGCAGCGGAGGCAGCTGCAACCATGCTTTCATCAGGAAATAACGGCAAGCTGATGGAGAGAACTGGATCACTGGACAGCAGCTATAATCATGTCACCAGGAAGTTTGGCTCGCCTGACTCTGAAGATATGGATGATGATTTACTGAAGAAGAAAAATGGGAACATGCTGAAGAAGATTGGGGTCTTTTGGAAAAAGCCACAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families
No domains found.

Protein Analysis

634

Amino Acids

70.67

Weight (kDa)

5.41

Isoelectric Point (pI)

56.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 1252, 1686
AccII CGCG 1 cut(s) 788
AciI CCGC 4 cut(s) 786, 1607, 1652, 1700
AclI AACGTT 1 cut(s) 945
AclWI GGATC 2 cut(s) 297, 1768
AcsI RAATTY 3 cut(s) 886, 986, 1113
AcuI CTGAAG 8 cut(s) 54, 314, 840, 962, 1245, 1836, 1859, 1883
AcvI CACGTG 1 cut(s) 881
AfaI GTAC 1 cut(s) 378
AfiI CCNNNNNNNGG 3 cut(s) 1027, 1252, 1686
AflII CTTAAG 1 cut(s) 578
AflIII ACRYGT 1 cut(s) 880
AhdI GACNNNNNGTC 1 cut(s) 1048
AjnI CCWGG 1 cut(s) 1790
AjuI GAANNNNNNNTTGG 4 cut(s) 656, 688, 888, 920
Alw21I GWGCWC 2 cut(s) 1124, 1144
Alw26I GTCTC 7 cut(s) 75, 91, 122, 477, 503, 998, 1085
AlwI GGATC 2 cut(s) 297, 1768
AlwNI CAGNNNCTG 1 cut(s) 415
Ama87I CYCGRG 1 cut(s) 93
AoxI GGCC 4 cut(s) 113, 238, 381, 1242
ApaI GGGCCC 1 cut(s) 242
ApoI RAATTY 3 cut(s) 886, 986, 1113
AseI ATTAAT 1 cut(s) 930
Asp700I GAANNNNTTC 1 cut(s) 1113
AspLEI GCGC 1 cut(s) 586
AspS9I GGNCC 3 cut(s) 238, 239, 1243
AsuHPI GGTGA 2 cut(s) 201, 1780
AsuII TTCGAA 1 cut(s) 1307
AvaI CYCGRG 1 cut(s) 93
BaeGI GKGCMC 1 cut(s) 242
BanII GRGCYC 2 cut(s) 242, 1302
BauI CACGAG 2 cut(s) 447, 1544
BbrPI CACGTG 1 cut(s) 881
Bbv12I GWGCWC 2 cut(s) 1124, 1144
BbvCI CCTCAGC 1 cut(s) 1454
BccI CCATC 5 cut(s) 812, 1246, 1399, 1558, 1741
BceAI ACGGC 2 cut(s) 1079, 1753
BciT130I CCWGG 1 cut(s) 1792
BclI TGATCA 1 cut(s) 616
BcoDI GTCTC 7 cut(s) 75, 91, 122, 477, 503, 998, 1085
BfaI CTAG 3 cut(s) 893, 1074, 1176
BfmI CTRYAG 2 cut(s) 773, 1424
BfrI CTTAAG 1 cut(s) 578
BglII AGATCT 1 cut(s) 1070
BlpI GCTNAGC 2 cut(s) 345, 648
BmcAI AGTACT 1 cut(s) 378
Bme1390I CCNGG 1 cut(s) 1792
BmeRI GACNNNNNGTC 1 cut(s) 1048
BmeT110I CYCGRG 1 cut(s) 93
BmgT120I GGNCC 3 cut(s) 238, 239, 1243
BmiI GGNNCC 3 cut(s) 28, 240, 1014
BmrFI CCNGG 1 cut(s) 1792
BmsI GCATC 5 cut(s) 152, 343, 560, 614, 1181
BplI GAGNNNNNCTC 2 cut(s) 1527, 1559
BpmI CTGGAG 2 cut(s) 800, 1637
Bpu10I CCTNAGC 2 cut(s) 423, 1454
Bpu1102I GCTNAGC 2 cut(s) 345, 648
Bpu14I TTCGAA 1 cut(s) 1307
BpuEI CTTGAG 3 cut(s) 527, 726, 899
BsaAI YACGTR 1 cut(s) 881
BsaI GGTCTC 3 cut(s) 91, 477, 1085
BsaJI CCNNGG 4 cut(s) 357, 546, 735, 1218
Bsc4I CCNNNNNNNGG 3 cut(s) 1027, 1252, 1686
Bse1I ACTGG 8 cut(s) 221, 384, 1155, 1200, 1353, 1684, 1762, 1770
Bse3DI GCAATG 2 cut(s) 759, 849
BseBI CCWGG 1 cut(s) 1792
BseDI CCNNGG 4 cut(s) 357, 546, 735, 1218
BseGI GGATG 1 cut(s) 1831
BseLI CCNNNNNNNGG 3 cut(s) 1027, 1252, 1686
BseMI GCAATG 2 cut(s) 759, 849
BseNI ACTGG 8 cut(s) 221, 384, 1155, 1200, 1353, 1684, 1762, 1770
BseRI GAGGAG 5 cut(s) 19, 45, 48, 374, 1301
BseSI GKGCMC 1 cut(s) 242
BseYI CCCAGC 1 cut(s) 408
BsgI GTGCAG 4 cut(s) 536, 1148, 1548, 1694
Bsh1236I CGCG 1 cut(s) 788
BshFI GGCC 4 cut(s) 115, 240, 383, 1244
BsiHKAI GWGCWC 2 cut(s) 1124, 1144
BsiHKCI CYCGRG 1 cut(s) 93
BslI CCNNNNNNNGG 3 cut(s) 1027, 1252, 1686
BsmAI GTCTC 7 cut(s) 75, 91, 122, 477, 503, 998, 1085
BsnI GGCC 4 cut(s) 115, 240, 383, 1244
Bso31I GGTCTC 3 cut(s) 91, 477, 1085
BsoBI CYCGRG 1 cut(s) 93
Bsp119I TTCGAA 1 cut(s) 1307
Bsp120I GGGCCC 1 cut(s) 238
Bsp1286I GDGCHC 4 cut(s) 242, 1124, 1144, 1302
Bsp143I GATC 5 cut(s) 289, 616, 865, 1070, 1760
Bsp1720I GCTNAGC 2 cut(s) 345, 648
BspACI CCGC 4 cut(s) 786, 1607, 1652, 1700
BspANI GGCC 4 cut(s) 115, 240, 383, 1244
BspFNI CGCG 1 cut(s) 788
BspHI TCATGA 1 cut(s) 1144
BspLI GGNNCC 3 cut(s) 28, 240, 1014
BspMAI CTGCAG 2 cut(s) 777, 1428
BspPI GGATC 2 cut(s) 297, 1768
BspT104I TTCGAA 1 cut(s) 1307
BspTI CTTAAG 1 cut(s) 578
BspTNI GGTCTC 3 cut(s) 91, 477, 1085
BsrDI GCAATG 2 cut(s) 759, 849
BsrI ACTGG 8 cut(s) 221, 384, 1155, 1200, 1353, 1684, 1762, 1770
BssECI CCNNGG 4 cut(s) 357, 546, 735, 1218
BssMI GATC 5 cut(s) 289, 616, 865, 1070, 1760
BssSI CACGAG 2 cut(s) 447, 1544
BssT1I CCWWGG 2 cut(s) 546, 1218
Bst2BI CACGAG 2 cut(s) 447, 1544
Bst2UI CCWGG 1 cut(s) 1792
Bst4CI ACNGT 2 cut(s) 514, 1126
Bst6I CTCTTC 3 cut(s) 1227, 1434, 1563
BstAFI CTTAAG 1 cut(s) 578
BstAPI GCANNNNNTGC 2 cut(s) 1526, 1637
BstBAI YACGTR 1 cut(s) 881
BstBI TTCGAA 1 cut(s) 1307
BstC8I GCNNGC 6 cut(s) 103, 342, 630, 937, 1742, 1805
BstEII GGTNACC 1 cut(s) 207
BstF5I GGATG 1 cut(s) 1831
BstFNI CGCG 1 cut(s) 788
BstHHI GCGC 1 cut(s) 586
BstKTI GATC 5 cut(s) 292, 619, 868, 1073, 1763
BstMAI GTCTC 7 cut(s) 75, 91, 122, 477, 503, 998, 1085
BstMBI GATC 5 cut(s) 289, 616, 865, 1070, 1760
BstNI CCWGG 1 cut(s) 1792
BstNSI RCATGY 3 cut(s) 632, 1382, 1861
BstPI GGTNACC 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 1790
BstSFI CTRYAG 2 cut(s) 773, 1424
BstSLI GKGCMC 1 cut(s) 242
BstUI CGCG 1 cut(s) 788
BstX2I RGATCY 2 cut(s) 289, 1070
BstYI RGATCY 2 cut(s) 289, 1070
BsuRI GGCC 4 cut(s) 115, 240, 383, 1244
BtsCI GGATG 1 cut(s) 1831
BtsIMutI CAGTG 4 cut(s) 195, 228, 1691, 1763
Cac8I GCNNGC 6 cut(s) 103, 342, 630, 937, 1742, 1805
CaiI CAGNNNCTG 1 cut(s) 415
CciI TCATGA 1 cut(s) 1144
CfoI GCGC 1 cut(s) 586
Cfr13I GGNCC 3 cut(s) 238, 239, 1243
CseI GACGC 1 cut(s) 191
Csp6I GTAC 1 cut(s) 377
CviQI GTAC 1 cut(s) 377
DpnI GATC 5 cut(s) 291, 618, 867, 1072, 1762
DpnII GATC 5 cut(s) 289, 616, 865, 1070, 1760
DraI TTTAAA 1 cut(s) 1392
DriI GACNNNNNGTC 1 cut(s) 1048
Eam1104I CTCTTC 3 cut(s) 1227, 1434, 1563
Eam1105I GACNNNNNGTC 1 cut(s) 1048
EarI CTCTTC 3 cut(s) 1227, 1434, 1563
EciI GGCGGA 2 cut(s) 1622, 1667
Eco130I CCWWGG 2 cut(s) 546, 1218
Eco24I GRGCYC 2 cut(s) 242, 1302
Eco31I GGTCTC 3 cut(s) 91, 477, 1085
Eco57I CTGAAG 8 cut(s) 54, 314, 840, 962, 1245, 1836, 1859, 1883
Eco72I CACGTG 1 cut(s) 881
Eco88I CYCGRG 1 cut(s) 93
Eco91I GGTNACC 1 cut(s) 207
EcoO109I RGGNCCY 1 cut(s) 238
EcoO65I GGTNACC 1 cut(s) 207
EcoRII CCWGG 1 cut(s) 1790
EcoT14I CCWWGG 2 cut(s) 546, 1218
EcoT38I GRGCYC 2 cut(s) 242, 1302
ErhI CCWWGG 2 cut(s) 546, 1218
FbaI TGATCA 1 cut(s) 616
FokI GGATG 1 cut(s) 1838
FriOI GRGCYC 2 cut(s) 242, 1302
FspBI CTAG 3 cut(s) 893, 1074, 1176
GlaI GCGC 1 cut(s) 585
GsaI CCCAGC 1 cut(s) 412
GsuI CTGGAG 2 cut(s) 800, 1637
HaeIII GGCC 4 cut(s) 115, 240, 383, 1244
HgaI GACGC 1 cut(s) 191
HhaI GCGC 1 cut(s) 586
Hin6I GCGC 1 cut(s) 584
HinP1I GCGC 1 cut(s) 584
HincII GTYRAC 1 cut(s) 535
HindII GTYRAC 1 cut(s) 535
HindIII AAGCTT 3 cut(s) 837, 1310, 1550
HphI GGTGA 2 cut(s) 201, 1780
Hpy166II GTNNAC 1 cut(s) 535
Hpy188III TCNNGA 7 cut(s) 422, 661, 1040, 1079, 1145, 1546, 1728
Hpy8I GTNNAC 1 cut(s) 535
Hpy99I CGWCG 1 cut(s) 207
HpyAV CCTTC 6 cut(s) 84, 229, 1234, 1585, 1656, 1687
HpyCH4III ACNGT 2 cut(s) 514, 1126
HpyCH4IV ACGT 2 cut(s) 880, 945
HpySE526I ACGT 2 cut(s) 880, 945
HspAI GCGC 1 cut(s) 584
Ksp22I TGATCA 1 cut(s) 616
Kzo9I GATC 5 cut(s) 289, 616, 865, 1070, 1760
LmnI GCTCC 5 cut(s) 32, 285, 465, 1012, 1156
LweI GCATC 5 cut(s) 152, 343, 560, 614, 1181
MaeI CTAG 3 cut(s) 893, 1074, 1176
MaeII ACGT 2 cut(s) 880, 945
MaeIII GTNAC 4 cut(s) 193, 207, 1381, 1786
MalI GATC 5 cut(s) 291, 618, 867, 1072, 1762
MboI GATC 5 cut(s) 289, 616, 865, 1070, 1760
MflI RGATCY 2 cut(s) 289, 1070
MhlI GDGCHC 4 cut(s) 242, 1124, 1144, 1302
MluCI AATT 7 cut(s) 713, 886, 986, 1113, 1268, 1303, 1358
MlyI GAGTC 6 cut(s) 131, 371, 530, 716, 791, 1805
MmeI TCCRAC 2 cut(s) 1440, 1704
MroXI GAANNNNTTC 1 cut(s) 1113
MseI TTAA 5 cut(s) 579, 716, 930, 1391, 1667
MslI CAYNNNNRTG 1 cut(s) 1562
MspA1I CMGCKG 6 cut(s) 412, 542, 778, 1615, 1700, 1709
MspCI CTTAAG 1 cut(s) 578
MspR9I CCNGG 1 cut(s) 1792
MvaI CCWGG 1 cut(s) 1792
MvnI CGCG 1 cut(s) 788
NdeII GATC 5 cut(s) 289, 616, 865, 1070, 1760
NlaIV GGNNCC 3 cut(s) 28, 240, 1014
NmeAIII GCCGAG 1 cut(s) 382
NmuCI GTSAC 3 cut(s) 193, 207, 1786
NspI RCATGY 3 cut(s) 632, 1382, 1861
NspV TTCGAA 1 cut(s) 1307
PaeI GCATGC 1 cut(s) 632
PaeR7I CTCGAG 1 cut(s) 93
PagI TCATGA 1 cut(s) 1144
PdmI GAANNNNTTC 1 cut(s) 1113
PfeI GAWTC 4 cut(s) 326, 404, 635, 731
PflMI CCANNNNNTGG 2 cut(s) 1252, 1686
PleI GAGTC 6 cut(s) 131, 370, 530, 716, 790, 1805
PmaCI CACGTG 1 cut(s) 881
PmlI CACGTG 1 cut(s) 881
PpsI GAGTC 6 cut(s) 131, 370, 530, 716, 790, 1805
Ppu21I YACGTR 1 cut(s) 881
PshBI ATTAAT 1 cut(s) 930
Psp1406I AACGTT 1 cut(s) 945
Psp6I CCWGG 1 cut(s) 1790
PspCI CACGTG 1 cut(s) 881
PspEI GGTNACC 1 cut(s) 207
PspFI CCCAGC 1 cut(s) 408
PspGI CCWGG 1 cut(s) 1790
PspN4I GGNNCC 3 cut(s) 28, 240, 1014
PspOMI GGGCCC 1 cut(s) 238
PspPI GGNCC 3 cut(s) 238, 239, 1243
PspXI VCTCGAGB 1 cut(s) 93
PstI CTGCAG 2 cut(s) 777, 1428
PstNI CAGNNNCTG 1 cut(s) 415
PsuI RGATCY 2 cut(s) 289, 1070
PvuII CAGCTG 5 cut(s) 412, 542, 778, 1615, 1709
RsaI GTAC 1 cut(s) 378
RsaNI GTAC 1 cut(s) 377
RseI CAYNNNNRTG 1 cut(s) 1562
SaqAI TTAA 5 cut(s) 579, 716, 930, 1391, 1667
Sau3AI GATC 5 cut(s) 289, 616, 865, 1070, 1760
Sau96I GGNCC 3 cut(s) 238, 239, 1243
ScaI AGTACT 1 cut(s) 378
SchI GAGTC 6 cut(s) 131, 371, 530, 716, 791, 1805
ScrFI CCNGG 1 cut(s) 1792
SduI GDGCHC 4 cut(s) 242, 1124, 1144, 1302
SfaNI GCATC 5 cut(s) 152, 343, 560, 614, 1181
SfcI CTRYAG 2 cut(s) 773, 1424
Sfr274I CTCGAG 1 cut(s) 93
SfuI TTCGAA 1 cut(s) 1307
SlaI CTCGAG 1 cut(s) 93
SmiMI CAYNNNNRTG 1 cut(s) 1562
SmlI CTYRAG 5 cut(s) 93, 506, 578, 741, 914
SmoI CTYRAG 5 cut(s) 93, 506, 578, 741, 914
SphI GCATGC 1 cut(s) 632
Sse9I AATT 7 cut(s) 713, 886, 986, 1113, 1268, 1303, 1358
SsiI CCGC 4 cut(s) 786, 1607, 1652, 1700
SspMI CTAG 3 cut(s) 893, 1074, 1176
StyD4I CCNGG 1 cut(s) 1790
StyI CCWWGG 2 cut(s) 546, 1218
TaaI ACNGT 2 cut(s) 514, 1126
TaiI ACGT 2 cut(s) 883, 948
TaqI TCGA 4 cut(s) 94, 399, 830, 1307
TaqII GACCGA 1 cut(s) 195
TasI AATT 7 cut(s) 713, 886, 986, 1113, 1268, 1303, 1358
TatI WGTACW 1 cut(s) 376
TfiI GAWTC 4 cut(s) 326, 404, 635, 731
Tru1I TTAA 5 cut(s) 579, 716, 930, 1391, 1667
Tru9I TTAA 5 cut(s) 579, 716, 930, 1391, 1667
TscAI CASTG 4 cut(s) 202, 228, 1691, 1770
TseFI GTSAC 3 cut(s) 193, 207, 1786
Tsp45I GTSAC 3 cut(s) 193, 207, 1786
TspDTI ATGAA 6 cut(s) 719, 1119, 1161, 1359, 1461, 1713
TspGWI ACGGA 2 cut(s) 1400, 1433
TspRI CASTG 4 cut(s) 202, 228, 1691, 1770
Van91I CCANNNNNTGG 2 cut(s) 1252, 1686
Vha464I CTTAAG 1 cut(s) 578
VspI ATTAAT 1 cut(s) 930
XapI RAATTY 3 cut(s) 886, 986, 1113
XceI RCATGY 3 cut(s) 632, 1382, 1861
XcmI CCANNNNNNNNNTGG 1 cut(s) 1642
XhoI CTCGAG 1 cut(s) 93
XmnI GAANNNNTTC 1 cut(s) 1113
XspI CTAG 3 cut(s) 893, 1074, 1176
ZrmI AGTACT 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.