MD11G1123900.v1.1

Interactor of constitutive active ROPs

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Reverse (-)
11373341 .. 11378337
4997 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1123900.v1.1.491

Sequence Viewer

Length: 1839 bp
ATGCAGACCCCCAAAGCAAGAAGTGGCTCCTCTGAAGTGCCTCGAAGGGGCTCTCCTCCTCGAAAGGTCTCCTCTCGAGCTGTTCGCCAACTCAGGCCAACTGCATTGGAGACTACTGATTCCGCATCTACTTCAAGTCAAGCTAAAAGAACACCTAAAGAAAGAAGCCCAAAAGTCACTGAGCGGCGGTCACCCAGAAGTCCATTGTTTGAGAAGAAGGGCCCAAGTAGAATATCTGAATTGGAATCTCAGATTTCTCAGCTCCAAGAGGATCTGAAGAAAGCAAAGAACCAGCTGCAATCATCTGAATCATGCAAGAAGCAAGCTCAGCAAGATGCTGAGGACTCCAAGAAGCAAGTACTGGCCTTGTCTTCGAAGCTCGAAGAATCCCAGCTGGTGCTTCCTGAGCTTTCTATTTCTGAGGAAGCTCGTGTTATCAAGCTTCACAAGATTTCACAAGAAAGAGATCAAGCGTGGCAGTCCGAGCTTGAGGCTGTGCAGAAGCAGCACTCAGCTGACTCAGCTGCCTTGGCATCTGCCGTTGATGAGATTGAGAGGCTGAAGGCGCAGCTTGAAGCAGTAGCTGCATCTGAGGCTGATCAAACGAAGCATGCAGAATTAACAAATGCCGAGCTTCAAAGCTTGAAAGAAAACTTGGCAGAAACACTTTCTCTTGTGGAAAACATGAAAACACAATTAAAGGACTGCAAGGCATCCGAAGCTCAAGCACAAGCAATGGTTAGTGAAACCCTACTGCAGCTGGAGACCGCGAGAACAACAATGGAGGCGCTCAGATTAGATGACATGAAATCGACAGAAGCTTACAAGTGCATTTCTTCAGAGTTAGATCAATCGAGGGCGCGTGTAAATTTACTAGAAGAACTCGTTAGCAAACTCAAGGCTGACCTGATTAATGCAAGCAGCAACGTTTCACAAAATCAGGCTGGTGACAATGACCTTCAGCAAAAATTTGGAGAAAAGCAAGAGACTATGGAGTCAAACCAAACTGAGGCAGAACTCCATGACTTGAAGTCTGAAGTGGCACGTCTAAGATCTACTCTTCAAACTGCTGAGACCAAATACCACGAAGAAAAAATTCAGAGCACCATGCAGCTAAGAAGTGCTCATGAACTGGATACGTTATTAACGAAAACCAAAGCTGAAGTAGAAGAGTTGAAGGCCCACCTGATGGACAAGGAAACTGAATTACAAGGCATTACAGAGGAGAACGAGGGGCTCAATTCGAAGCTTGATAAAAGCCTTTCATGCCAGAGAGAGTATGAACTGGAAAAGGAATTGAAAGAACTAAAAGGGCATGTTACGGATTTAAAGGCTCATTTGATGGACAAGGAAACGGAACTGCAGAGTATTTCAGAAGAGAATGAAACACTCAGGTTGGAAATCAACAAAAGCCAAAGTAAAGTTAAGAATGAGGTAGAGGCGGAAGTAGAGGCTGCAAGGTGTGCAGAACGAGAGGCTCTCGTGAAGCTTGGCATTGTGATGGAGGAGGCAGACAAGAGCAGCAAGAAGGTAGCAAGAGTGGCGGAACAGCTGGAGGCAGCACAGGCAGCCAATGCAGAAATGGAGGGTGAACTTAGAAGGTTAAAGGTGCAGTCTGACCAGTGGAGGAAGGCAGCTGAGGCAGCTGCAACCATGCTTTCACCAGGAAATAACGGCAAGCTGATGGAGAGAACTGGGTCATTGGACAGCAGCTATAATCATGTCACCGGGAAGTTTGGCTCGCCTGACTCTGAAGATATGGATGATGATTTACTGAAGAAGAAAAATGGAAACGTGCTAAAGAAGATTGGGGTCTTTTGGAAGAAGCCGCATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families
No domains found.

Protein Analysis

613

Amino Acids

68.37

Weight (kDa)

5.59

Isoelectric Point (pI)

52.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 994
AccB7I CCANNNNNTGG 1 cut(s) 1189
AccBSI CCGCTC 1 cut(s) 184
AccII CGCG 2 cut(s) 770, 862
AciI CCGC 7 cut(s) 123, 184, 187, 768, 1442, 1544, 1829
AclI AACGTT 1 cut(s) 927
AclWI GGATC 1 cut(s) 279
AcsI RAATTY 3 cut(s) 868, 968, 1095
AcuI CTGAAG 9 cut(s) 54, 296, 581, 822, 944, 1056, 1182, 1773, 1796
AfaI GTAC 1 cut(s) 360
AfiI CCNNNNNNNGG 3 cut(s) 47, 1009, 1189
AgsI TTSAA 8 cut(s) 135, 575, 638, 646, 1030, 1064, 1177, 1300
AhdI GACNNNNNGTC 1 cut(s) 1030
AjiI CACGTC 1 cut(s) 1046
AjnI CCWGG 1 cut(s) 1663
AjuI GAANNNNNNNTTGG 2 cut(s) 638, 670
Alw21I GWGCWC 2 cut(s) 1106, 1126
Alw26I GTCTC 5 cut(s) 73, 104, 758, 980, 1067
AlwI GGATC 1 cut(s) 279
AlwNI CAGNNNCTG 1 cut(s) 584
Ama87I CYCGRG 1 cut(s) 75
AoxI GGCC 4 cut(s) 95, 220, 363, 1179
ApaI GGGCCC 1 cut(s) 224
ApoI RAATTY 3 cut(s) 868, 968, 1095
AseI ATTAAT 1 cut(s) 912
Asp700I GAANNNNTTC 1 cut(s) 1095
AspLEI GCGC 3 cut(s) 568, 790, 862
AspS9I GGNCC 3 cut(s) 220, 221, 1180
AsuC2I CCSGG 1 cut(s) 1729
AsuHPI GGTGA 5 cut(s) 183, 959, 1601, 1653, 1717
AsuII TTCGAA 2 cut(s) 374, 1244
AvaI CYCGRG 1 cut(s) 75
BaeGI GKGCMC 1 cut(s) 224
BanII GRGCYC 3 cut(s) 53, 224, 1239
BauI CACGAG 2 cut(s) 429, 1481
BbsI GAAGAC 1 cut(s) 363
Bbv12I GWGCWC 2 cut(s) 1106, 1126
BbvCI CCTCAGC 2 cut(s) 339, 1638
BccI CCATC 4 cut(s) 1183, 1336, 1495, 1678
BceAI ACGGC 2 cut(s) 524, 1690
BciT130I CCWGG 1 cut(s) 1665
BciVI GTATCC 1 cut(s) 1129
BclI TGATCA 1 cut(s) 598
BcnI CCSGG 1 cut(s) 1729
BcoDI GTCTC 5 cut(s) 73, 104, 758, 980, 1067
BfaI CTAG 1 cut(s) 875
BfmI CTRYAG 2 cut(s) 755, 1361
BfoI RGCGCY 1 cut(s) 791
BfuI GTATCC 1 cut(s) 1129
BglII AGATCT 1 cut(s) 1052
BlpI GCTNAGC 1 cut(s) 327
BmcAI AGTACT 1 cut(s) 360
Bme1390I CCNGG 2 cut(s) 1665, 1729
BmeRI GACNNNNNGTC 1 cut(s) 1030
BmeT110I CYCGRG 1 cut(s) 75
BmgBI CACGTC 1 cut(s) 1046
BmgT120I GGNCC 3 cut(s) 220, 221, 1180
BmiI GGNNCC 2 cut(s) 28, 222
BmrFI CCNGG 2 cut(s) 1665, 1729
BmrI ACTGGG 1 cut(s) 1704
BmsI GCATC 5 cut(s) 134, 325, 542, 596, 722
BmuI ACTGGG 1 cut(s) 1704
BpiI GAAGAC 1 cut(s) 363
BplI GAGNNNNNCTC 2 cut(s) 1464, 1496
BpmI CTGGAG 2 cut(s) 782, 1574
Bpu10I CCTNAGC 3 cut(s) 339, 405, 1638
Bpu1102I GCTNAGC 1 cut(s) 327
Bpu14I TTCGAA 2 cut(s) 374, 1244
BpuEI CTTGAG 3 cut(s) 509, 708, 881
BpuMI CCSGG 1 cut(s) 1729
BsaI GGTCTC 3 cut(s) 73, 758, 1067
BsaJI CCNNGG 1 cut(s) 528
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 1009, 1189
Bse1I ACTGG 5 cut(s) 366, 1137, 1290, 1621, 1699
Bse3DI GCAATG 1 cut(s) 741
BseBI CCWGG 1 cut(s) 1665
BseDI CCNNGG 1 cut(s) 528
BseGI GGATG 2 cut(s) 713, 1768
BseLI CCNNNNNNNGG 3 cut(s) 47, 1009, 1189
BseMI GCAATG 1 cut(s) 741
BseNI ACTGG 5 cut(s) 366, 1137, 1290, 1621, 1699
BseRI GAGGAG 6 cut(s) 19, 45, 48, 61, 1238, 1520
BseSI GKGCMC 1 cut(s) 224
BseYI CCCAGC 1 cut(s) 390
BsgI GTGCAG 3 cut(s) 518, 1485, 1631
Bsh1236I CGCG 2 cut(s) 770, 862
BshFI GGCC 4 cut(s) 97, 222, 365, 1181
BsiHKAI GWGCWC 2 cut(s) 1106, 1126
BsiHKCI CYCGRG 1 cut(s) 75
BsiSI CCGG 1 cut(s) 1728
BslI CCNNNNNNNGG 3 cut(s) 47, 1009, 1189
BsmAI GTCTC 5 cut(s) 73, 104, 758, 980, 1067
BsnI GGCC 4 cut(s) 97, 222, 365, 1181
Bso31I GGTCTC 3 cut(s) 73, 758, 1067
BsoBI CYCGRG 1 cut(s) 75
Bsp119I TTCGAA 2 cut(s) 374, 1244
Bsp120I GGGCCC 1 cut(s) 220
Bsp1286I GDGCHC 5 cut(s) 53, 224, 1106, 1126, 1239
Bsp143I GATC 5 cut(s) 271, 466, 598, 847, 1052
Bsp1720I GCTNAGC 1 cut(s) 327
BspACI CCGC 7 cut(s) 123, 184, 187, 768, 1442, 1544, 1829
BspANI GGCC 4 cut(s) 97, 222, 365, 1181
BspFNI CGCG 2 cut(s) 770, 862
BspHI TCATGA 1 cut(s) 1126
BspLI GGNNCC 2 cut(s) 28, 222
BspMAI CTGCAG 2 cut(s) 759, 1365
BspPI GGATC 1 cut(s) 279
BspT104I TTCGAA 2 cut(s) 374, 1244
BspTNI GGTCTC 3 cut(s) 73, 758, 1067
BsrBI CCGCTC 1 cut(s) 184
BsrDI GCAATG 1 cut(s) 741
BsrI ACTGG 5 cut(s) 366, 1137, 1290, 1621, 1699
BssECI CCNNGG 1 cut(s) 528
BssMI GATC 5 cut(s) 271, 466, 598, 847, 1052
BssSI CACGAG 2 cut(s) 429, 1481
BssT1I CCWWGG 1 cut(s) 528
Bst2BI CACGAG 2 cut(s) 429, 1481
Bst2UI CCWGG 1 cut(s) 1665
Bst6I CTCTTC 3 cut(s) 1065, 1164, 1371
BstAPI GCANNNNNTGC 3 cut(s) 584, 1463, 1574
BstBI TTCGAA 2 cut(s) 374, 1244
BstC8I GCNNGC 5 cut(s) 324, 612, 919, 1679, 1742
BstEII GGTNACC 1 cut(s) 189
BstF5I GGATG 2 cut(s) 713, 1768
BstFNI CGCG 2 cut(s) 770, 862
BstH2I RGCGCY 1 cut(s) 791
BstHHI GCGC 3 cut(s) 568, 790, 862
BstKTI GATC 5 cut(s) 274, 469, 601, 850, 1055
BstMAI GTCTC 5 cut(s) 73, 104, 758, 980, 1067
BstMBI GATC 5 cut(s) 271, 466, 598, 847, 1052
BstNI CCWGG 1 cut(s) 1665
BstNSI RCATGY 2 cut(s) 614, 1319
BstPI GGTNACC 1 cut(s) 189
BstSCI CCNGG 2 cut(s) 1663, 1727
BstSFI CTRYAG 2 cut(s) 755, 1361
BstSLI GKGCMC 1 cut(s) 224
BstUI CGCG 2 cut(s) 770, 862
BstV2I GAAGAC 1 cut(s) 363
BstX2I RGATCY 2 cut(s) 271, 1052
BstYI RGATCY 2 cut(s) 271, 1052
BsuI GTATCC 1 cut(s) 1129
BsuRI GGCC 4 cut(s) 97, 222, 365, 1181
BtrI CACGTC 1 cut(s) 1046
BtsCI GGATG 2 cut(s) 713, 1768
BtsIMutI CAGTG 2 cut(s) 177, 1628
Cac8I GCNNGC 5 cut(s) 324, 612, 919, 1679, 1742
CaiI CAGNNNCTG 1 cut(s) 584
CciI TCATGA 1 cut(s) 1126
CfoI GCGC 3 cut(s) 568, 790, 862
Cfr13I GGNCC 3 cut(s) 220, 221, 1180
Csp6I GTAC 1 cut(s) 359
CviQI GTAC 1 cut(s) 359
DpnI GATC 5 cut(s) 273, 468, 600, 849, 1054
DpnII GATC 5 cut(s) 271, 466, 598, 847, 1052
DraI TTTAAA 1 cut(s) 1329
DrdI GACNNNNNNGTC 1 cut(s) 994
DriI GACNNNNNGTC 1 cut(s) 1030
DseDI GACNNNNNNGTC 1 cut(s) 994
Eam1104I CTCTTC 3 cut(s) 1065, 1164, 1371
Eam1105I GACNNNNNGTC 1 cut(s) 1030
EarI CTCTTC 3 cut(s) 1065, 1164, 1371
EciI GGCGGA 2 cut(s) 1457, 1559
Eco130I CCWWGG 1 cut(s) 528
Eco24I GRGCYC 3 cut(s) 53, 224, 1239
Eco31I GGTCTC 3 cut(s) 73, 758, 1067
Eco57I CTGAAG 9 cut(s) 54, 296, 581, 822, 944, 1056, 1182, 1773, 1796
Eco88I CYCGRG 1 cut(s) 75
Eco91I GGTNACC 1 cut(s) 189
EcoO109I RGGNCCY 1 cut(s) 220
EcoO65I GGTNACC 1 cut(s) 189
EcoRII CCWGG 1 cut(s) 1663
EcoT14I CCWWGG 1 cut(s) 528
EcoT38I GRGCYC 3 cut(s) 53, 224, 1239
ErhI CCWWGG 1 cut(s) 528
FbaI TGATCA 1 cut(s) 598
FokI GGATG 2 cut(s) 700, 1775
FriOI GRGCYC 3 cut(s) 53, 224, 1239
FspBI CTAG 1 cut(s) 875
GlaI GCGC 3 cut(s) 567, 789, 861
GsaI CCCAGC 1 cut(s) 394
GsuI CTGGAG 2 cut(s) 782, 1574
HaeII RGCGCY 1 cut(s) 791
HaeIII GGCC 4 cut(s) 97, 222, 365, 1181
HapII CCGG 1 cut(s) 1728
HhaI GCGC 3 cut(s) 568, 790, 862
Hin6I GCGC 3 cut(s) 566, 788, 860
HinP1I GCGC 3 cut(s) 566, 788, 860
HindIII AAGCTT 5 cut(s) 440, 640, 819, 1247, 1487
HinfI GANTC 8 cut(s) 119, 245, 308, 344, 386, 518, 995, 1748
HpaII CCGG 1 cut(s) 1728
HphI GGTGA 5 cut(s) 183, 959, 1601, 1653, 1717
Hpy166II GTNNAC 1 cut(s) 1592
Hpy188III TCNNGA 4 cut(s) 75, 404, 1127, 1483
Hpy8I GTNNAC 1 cut(s) 1592
HpyAV CCTTC 8 cut(s) 39, 211, 556, 968, 1171, 1522, 1593, 1624
HpyCH4IV ACGT 4 cut(s) 927, 1045, 1139, 1794
HpySE526I ACGT 4 cut(s) 927, 1045, 1139, 1794
HspAI GCGC 3 cut(s) 566, 788, 860
Ksp22I TGATCA 1 cut(s) 598
Kzo9I GATC 5 cut(s) 271, 466, 598, 847, 1052
LmnI GCTCC 2 cut(s) 32, 267
LweI GCATC 5 cut(s) 134, 325, 542, 596, 722
MaeI CTAG 1 cut(s) 875
MaeII ACGT 4 cut(s) 927, 1045, 1139, 1794
MaeIII GTNAC 5 cut(s) 175, 189, 947, 1318, 1723
MalI GATC 5 cut(s) 273, 468, 600, 849, 1054
MbiI CCGCTC 1 cut(s) 184
MboI GATC 5 cut(s) 271, 466, 598, 847, 1052
MflI RGATCY 2 cut(s) 271, 1052
MhlI GDGCHC 5 cut(s) 53, 224, 1106, 1126, 1239
MluCI AATT 9 cut(s) 239, 617, 695, 868, 968, 1095, 1205, 1240, 1295
MlyI GAGTC 4 cut(s) 338, 512, 1004, 1742
MmeI TCCRAC 1 cut(s) 1377
MroXI GAANNNNTTC 1 cut(s) 1095
MseI TTAA 7 cut(s) 620, 698, 912, 1145, 1328, 1425, 1604
MslI CAYNNNNRTG 1 cut(s) 1499
MspA1I CMGCKG 8 cut(s) 295, 394, 515, 524, 760, 1552, 1637, 1646
MspI CCGG 1 cut(s) 1728
MspR9I CCNGG 2 cut(s) 1665, 1729
MvaI CCWGG 1 cut(s) 1665
MvnI CGCG 2 cut(s) 770, 862
NciI CCSGG 1 cut(s) 1729
NdeII GATC 5 cut(s) 271, 466, 598, 847, 1052
NlaIV GGNNCC 2 cut(s) 28, 222
NmeAIII GCCGAG 1 cut(s) 655
NmuCI GTSAC 4 cut(s) 175, 189, 947, 1723
NspI RCATGY 2 cut(s) 614, 1319
NspV TTCGAA 2 cut(s) 374, 1244
PaeI GCATGC 1 cut(s) 614
PaeR7I CTCGAG 1 cut(s) 75
PagI TCATGA 1 cut(s) 1126
PcsI WCGNNNNNNNCGW 1 cut(s) 1145
PdmI GAANNNNTTC 1 cut(s) 1095
PfeI GAWTC 4 cut(s) 119, 245, 308, 386
PflMI CCANNNNNTGG 1 cut(s) 1189
PleI GAGTC 4 cut(s) 338, 512, 1003, 1742
PpsI GAGTC 4 cut(s) 338, 512, 1003, 1742
PshBI ATTAAT 1 cut(s) 912
Psp1406I AACGTT 1 cut(s) 927
Psp6I CCWGG 1 cut(s) 1663
PspEI GGTNACC 1 cut(s) 189
PspFI CCCAGC 1 cut(s) 390
PspGI CCWGG 1 cut(s) 1663
PspN4I GGNNCC 2 cut(s) 28, 222
PspOMI GGGCCC 1 cut(s) 220
PspPI GGNCC 3 cut(s) 220, 221, 1180
PstI CTGCAG 2 cut(s) 759, 1365
PstNI CAGNNNCTG 1 cut(s) 584
PsuI RGATCY 2 cut(s) 271, 1052
PvuII CAGCTG 8 cut(s) 295, 394, 515, 524, 760, 1552, 1637, 1646
RsaI GTAC 1 cut(s) 360
RsaNI GTAC 1 cut(s) 359
RseI CAYNNNNRTG 1 cut(s) 1499
SaqAI TTAA 7 cut(s) 620, 698, 912, 1145, 1328, 1425, 1604
Sau3AI GATC 5 cut(s) 271, 466, 598, 847, 1052
Sau96I GGNCC 3 cut(s) 220, 221, 1180
ScaI AGTACT 1 cut(s) 360
SchI GAGTC 4 cut(s) 338, 512, 1004, 1742
ScrFI CCNGG 2 cut(s) 1665, 1729
SduI GDGCHC 5 cut(s) 53, 224, 1106, 1126, 1239
SfaNI GCATC 5 cut(s) 134, 325, 542, 596, 722
SfcI CTRYAG 2 cut(s) 755, 1361
Sfr274I CTCGAG 1 cut(s) 75
SfuI TTCGAA 2 cut(s) 374, 1244
SlaI CTCGAG 1 cut(s) 75
SmiMI CAYNNNNRTG 1 cut(s) 1499
SmlI CTYRAG 4 cut(s) 75, 488, 723, 896
SmoI CTYRAG 4 cut(s) 75, 488, 723, 896
SphI GCATGC 1 cut(s) 614
Sse9I AATT 9 cut(s) 239, 617, 695, 868, 968, 1095, 1205, 1240, 1295
SsiI CCGC 7 cut(s) 123, 184, 187, 768, 1442, 1544, 1829
SspMI CTAG 1 cut(s) 875
StyD4I CCNGG 2 cut(s) 1663, 1727
StyI CCWWGG 1 cut(s) 528
TaiI ACGT 4 cut(s) 930, 1048, 1142, 1797
TaqI TCGA 8 cut(s) 43, 61, 76, 374, 381, 812, 854, 1244
TasI AATT 9 cut(s) 239, 617, 695, 868, 968, 1095, 1205, 1240, 1295
TatI WGTACW 1 cut(s) 358
TauI GCSGC 2 cut(s) 187, 1831
TfiI GAWTC 4 cut(s) 119, 245, 308, 386
Tru1I TTAA 7 cut(s) 620, 698, 912, 1145, 1328, 1425, 1604
Tru9I TTAA 7 cut(s) 620, 698, 912, 1145, 1328, 1425, 1604
TscAI CASTG 2 cut(s) 184, 1628
TseFI GTSAC 4 cut(s) 175, 189, 947, 1723
Tsp45I GTSAC 4 cut(s) 175, 189, 947, 1723
TspDTI ATGAA 6 cut(s) 701, 821, 1143, 1254, 1296, 1398
TspGWI ACGGA 2 cut(s) 1337, 1370
TspRI CASTG 2 cut(s) 184, 1628
Van91I CCANNNNNTGG 1 cut(s) 1189
VspI ATTAAT 1 cut(s) 912
XapI RAATTY 3 cut(s) 868, 968, 1095
XceI RCATGY 2 cut(s) 614, 1319
XcmI CCANNNNNNNNNTGG 1 cut(s) 1579
XhoI CTCGAG 1 cut(s) 75
XmnI GAANNNNTTC 1 cut(s) 1095
XspI CTAG 1 cut(s) 875
ZrmI AGTACT 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.