Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002567

Physical Location & Seq

Genomic Coordinates Reverse (-)

40903682 .. 40904165

Gene Structure 484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0336900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCCTCCATTGATGCTATCACCTCTAGCTGTACTGCCTTCCTTGCGCTTGCAAAGGGAGGTAGTGCTCCTGATCTAGGGAGAATTGGTGGTGGCCCTATTCGTCGGTCTTCCAAATCTTTTCTGATTGGGAAGCCACTGACCCGCCAACTGGTCAACCCTGCGGCCTTCAAGGCTCACTTCCTCCGTACCTGGATGGATGTCACTCTGGTGATGTTGAAGAAGAAATCGGGCAAGCTACTTGGGAGTAGGAACAAGAATCATCACCCTAGCAAGAAGTCGAATGTCGCTACTTTGCGACTCTCTTACCCTGCAATTACTGGTATTGATCCCAGCCCTAGTGACAAGGGCAAGGGAAAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

12.89

Weight (kDa)

10.94

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60210 AT5G60210 AT5G60210 AT5G60210 AT5G60210 AT5G60210
fragaria_vesca	FvH4_3g33632 FvH4_3g33632 FvH4_3g33632 FvH4_3g33632 FvH4_3g33632 FvH4_3g33632 FvH4_3g33632 FvH4_3g33632 FvH4_3g33632 FvH4_3g33632 FvH4_3g33632
malus_domestica	MD03G1110200.v1.1 MD11G1123900.v1.1
prunus_persica	Prupe.6G092800_v2.0.a1 Prupe.6G092800_v2.0.a1 Prupe.6G092800_v2.0.a1 Prupe.6G092800_v2.0.a1 Prupe.6G092800_v2.0.a1 Prupe.6G092800_v2.0.a1 Prupe.6G092800_v2.0.a1
pyrus_communis	pycom11g10440
rosa_chinensis	RchiOBHm_Chr5g0061061
rosa_laevigata	RLG00000035425
rosa_multiflora	Rmu_sc0015006.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019580
rosa_rugosa	Rorug05G0336600 Rorug05G0336700 Rorug05G0336800 Rorug05G0336900
rosa_samantha	Rh5AG398700 Rh5BG411600 Rh5CG436600 Rh5DG426000
rosa_wichuraiana	Rw5G037600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	145, 164
AclWI	GGATC	1 cut(s)	323
AcsI	RAATTY	1 cut(s)	359
AfaI	GTAC	2 cut(s)	34, 190
AfiI	CCNNNNNNNGG	2 cut(s)	77, 151
AgsI	TTSAA	2 cut(s)	172, 220
AjnI	CCWGG	1 cut(s)	191
AleI	CACNNNNGTG	1 cut(s)	209
AluBI	AGCT	2 cut(s)	30, 238
AluI	AGCT	2 cut(s)	30, 238
Alw21I	GWGCWC	1 cut(s)	70
AlwI	GGATC	1 cut(s)	323
AoxI	GGCC	3 cut(s)	3, 94, 165
ApoI	RAATTY	1 cut(s)	359
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	1 cut(s)	95
AsuHPI	GGTGA	3 cut(s)	13, 223, 257
BbsI	GAAGAC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	70
BccI	CCATC	1 cut(s)	190
BciT130I	CCWGG	1 cut(s)	193
BfaI	CTAG	4 cut(s)	27, 77, 270, 339
BglI	GCCNNNNNGGC	1 cut(s)	173
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
Bme1390I	CCNGG	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	95
BmrFI	CCNGG	1 cut(s)	193
BmsI	GCATC	1 cut(s)	4
BpiI	GAAGAC	1 cut(s)	102
BsaXI	ACNNNNNCTCC	2 cut(s)	73, 103
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 151
Bse1I	ACTGG	2 cut(s)	156, 325
BseBI	CCWGG	1 cut(s)	193
BseGI	GGATG	2 cut(s)	201, 205
BseLI	CCNNNNNNNGG	2 cut(s)	77, 151
BseNI	ACTGG	2 cut(s)	156, 325
BseYI	CCCAGC	1 cut(s)	332
BshFI	GGCC	3 cut(s)	5, 96, 167
BsiHKAI	GWGCWC	1 cut(s)	70
BslI	CCNNNNNNNGG	2 cut(s)	77, 151
BsnI	GGCC	3 cut(s)	5, 96, 167
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	73, 328
BspACI	CCGC	2 cut(s)	145, 164
BspANI	GGCC	3 cut(s)	5, 96, 167
BspPI	GGATC	1 cut(s)	323
BsrI	ACTGG	2 cut(s)	156, 325
BssMI	GATC	2 cut(s)	73, 328
Bst2UI	CCWGG	1 cut(s)	193
BstC8I	GCNNGC	2 cut(s)	51, 236
BstENI	CCTNNNNNAGG	1 cut(s)	75
BstF5I	GGATG	2 cut(s)	201, 205
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	2 cut(s)	76, 331
BstMBI	GATC	2 cut(s)	73, 328
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 173
BstNI	CCWGG	1 cut(s)	193
BstSCI	CCNGG	1 cut(s)	191
BstV2I	GAAGAC	1 cut(s)	102
BsuRI	GGCC	3 cut(s)	5, 96, 167
BtsCI	GGATG	2 cut(s)	201, 205
BtsIMutI	CAGTG	1 cut(s)	137
Cac8I	GCNNGC	2 cut(s)	51, 236
CfoI	GCGC	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	95
Csp6I	GTAC	2 cut(s)	33, 189
CviJI	RGCY	8 cut(s)	5, 30, 96, 136, 167, 176, 238, 336
CviKI_1	RGCY	8 cut(s)	5, 30, 96, 136, 167, 176, 238, 336
CviQI	GTAC	2 cut(s)	33, 189
DpnI	GATC	2 cut(s)	75, 330
DpnII	GATC	2 cut(s)	73, 328
EcoNI	CCTNNNNNAGG	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	191
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FauI	CCCGC	1 cut(s)	152
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	2 cut(s)	208, 212
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	4 cut(s)	27, 77, 270, 339
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	1 cut(s)	165
GsaI	CCCAGC	1 cut(s)	336
HaeIII	GGCC	3 cut(s)	5, 96, 167
HhaI	GCGC	1 cut(s)	49
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	2 cut(s)	259, 300
HphI	GGTGA	3 cut(s)	13, 223, 257
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	1 cut(s)	71
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	1 cut(s)	108
HpyAV	CCTTC	2 cut(s)	49, 178
HpyCH4V	TGCA	2 cut(s)	53, 314
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 173
HspAI	GCGC	1 cut(s)	47
Kzo9I	GATC	2 cut(s)	73, 328
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	9 cut(s)	84, 137, 174, 178, 194, 205, 306, 324, 346
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	4 cut(s)	27, 77, 270, 339
MaeIII	GTNAC	2 cut(s)	202, 341
MalI	GATC	2 cut(s)	75, 330
MboI	GATC	2 cut(s)	73, 328
MboII	GAAGA	3 cut(s)	102, 232, 235
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	3 cut(s)	84, 315, 359
MlyI	GAGTC	1 cut(s)	294
MnlI	CCTC	4 cut(s)	16, 34, 53, 194
MslI	CAYNNNNRTG	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	193
MvaI	CCWGG	1 cut(s)	193
MwoI	GCNNNNNNNGC	2 cut(s)	44, 173
NdeII	GATC	2 cut(s)	73, 328
NmuCI	GTSAC	2 cut(s)	202, 341
OliI	CACNNNNGTG	1 cut(s)	209
PfeI	GAWTC	1 cut(s)	259
PkrI	GCNGC	1 cut(s)	166
PleI	GAGTC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	191
PspFI	CCCAGC	1 cut(s)	332
PspGI	CCWGG	1 cut(s)	191
PspPI	GGNCC	1 cut(s)	95
RsaI	GTAC	2 cut(s)	34, 190
RsaNI	GTAC	2 cut(s)	33, 189
RseI	CAYNNNNRTG	1 cut(s)	209
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	2 cut(s)	73, 328
Sau96I	GGNCC	1 cut(s)	95
SchI	GAGTC	1 cut(s)	294
ScrFI	CCNGG	1 cut(s)	193
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	5 cut(s)	26, 32, 64, 194, 240
SfaNI	GCATC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	209
Sse9I	AATT	3 cut(s)	84, 315, 359
SsiI	CCGC	2 cut(s)	145, 164
SspMI	CTAG	4 cut(s)	27, 77, 270, 339
StyD4I	CCNGG	1 cut(s)	191
TaqI	TCGA	1 cut(s)	281
TaqII	GACCGA	1 cut(s)	96
TasI	AATT	3 cut(s)	84, 315, 359
TatI	WGTACW	1 cut(s)	32
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	1 cut(s)	259
TscAI	CASTG	1 cut(s)	144
TseFI	GTSAC	2 cut(s)	202, 341
Tsp45I	GTSAC	2 cut(s)	202, 341
TspGWI	ACGGA	1 cut(s)	176
TspRI	CASTG	1 cut(s)	144
XagI	CCTNNNNNAGG	1 cut(s)	75
XapI	RAATTY	1 cut(s)	359
XspI	CTAG	4 cut(s)	27, 77, 270, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.