Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002567

Physical Location & Seq

Genomic Coordinates Forward (+)

66237859 .. 66243791

Gene Structure 5933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G037600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGCAAACCCCAAAAGCAAGAAATGGTGCCTCTGAAGTACCTCAACGGGTATCCCCCACTCAAAGGGTAACTCCGCCTCCAAGGGTATCCCCAACTCAAAAGGTGTCCCCTACTCAAAAGGACTCTCCTCGAGTAGTGCGCCGCCAACTTAAGCCAACTGCATTGGAGACTGATCCTGCATCTACTTCAAGTCAAGCTAGACGACTATCTAAAGACAGAAGCCCAAAAGTCAATGAGAGACGGTCACCCAGAAGTCCATTGCCTGAGAAGAAAGGCTCAAGTAGAGTATCTGAATTGGAATCTCAGATTTCTCAACTCCAGGAGGACTTGAAAAAAGCAAACAACGAGCTTCAGTCTTCCGAGTCATGCAAGAAACAAGCTCAGCAAGATGCTGAGGAATCAAAGAAGCAATTACTCGCCTTGTCATCAAAGCTCGAAGAATCTCAGCAGATTCCTGATCTTTGTATTTCTGAGGAAGCTCGTGTAATCAAGCTTCAAAAGATTTCACAAGAAAGAGAGCAAGCATGGCAGTCAGAGCTTGAGGCTGTCCAGAAGCAGCACTCAGTTGATGCAGTTGCCTTGGCATCTGCCATTGATGAGATTGAGAGGCTTAAACTGCAGCTTGAAATGGTAGCTGTATCTGAGGCTGATCAGACAAAGCATGCAGAATTAGTCAATGGAGAGCTCCAAAGCTTGAAAAAAAACTTGGCAGAAACTCTTTCACTTGTAGACAACATGAAAAACGAAATGAAGGGCTGTAAGGAAGCCGAAGCTCAAGCACAGGCACAGGTTAGTCAAACCCTGCTGCAGCTGGAATCTGCAAGAAGAACAGTGGAGACACTCAGTTCTGATGGCATGAAGGCCATGGAAGCTTACAACTCAGTTGCTTCAGAATTAGATCAGTCAAAAGCACGGGTAAATTCACTAGAAGAAATTGTTGCCAAACTCAAGGCTGACCTGAATAATGTAAGCAGCAACAATGACCTTGAGCGGGAATTTGGAAAAAGCACGAGTCTATGGGACCAAATGAGATTGAGGCAGAGCTTTACACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

No domains found.

Protein Analysis

351

Amino Acids

39.14

Weight (kDa)

7.64

Isoelectric Point (pI)

64.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60210 AT5G60210 AT5G60210 AT5G60210 AT5G60210 AT5G60210
fragaria_vesca	FvH4_3g33632 FvH4_3g33632 FvH4_3g33632 FvH4_3g33632 FvH4_3g33632 FvH4_3g33632 FvH4_3g33632 FvH4_3g33632 FvH4_3g33632 FvH4_3g33632 FvH4_3g33632
malus_domestica	MD03G1110200.v1.1 MD11G1123900.v1.1
prunus_persica	Prupe.6G092800_v2.0.a1 Prupe.6G092800_v2.0.a1 Prupe.6G092800_v2.0.a1 Prupe.6G092800_v2.0.a1 Prupe.6G092800_v2.0.a1 Prupe.6G092800_v2.0.a1 Prupe.6G092800_v2.0.a1
pyrus_communis	pycom11g10440
rosa_chinensis	RchiOBHm_Chr5g0061061
rosa_laevigata	RLG00000035425
rosa_multiflora	Rmu_sc0015006.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019580
rosa_rugosa	Rorug05G0336600 Rorug05G0336700 Rorug05G0336800 Rorug05G0336900
rosa_samantha	Rh5AG398700 Rh5BG411600 Rh5CG436600 Rh5DG426000
rosa_wichuraiana	Rw5G037600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	26
AccBSI	CCGCTC	1 cut(s)	991
AccI	GTMKAC	1 cut(s)	729
AciI	CCGC	3 cut(s)	74, 142, 991
AclWI	GGATC	1 cut(s)	167
AcsI	RAATTY	2 cut(s)	919, 995
AcuI	CTGAAG	3 cut(s)	54, 335, 873
AfaI	GTAC	1 cut(s)	39
AfiI	CCNNNNNNNGG	2 cut(s)	63, 991
AflII	CTTAAG	1 cut(s)	149
AgsI	TTSAA	5 cut(s)	189, 331, 497, 626, 697
AjnI	CCWGG	1 cut(s)	318
AjuI	GAANNNNNNNTTGG	2 cut(s)	689, 721
Alw21I	GWGCWC	1 cut(s)	687
Alw26I	GTCTC	3 cut(s)	161, 232, 830
AlwI	GGATC	1 cut(s)	167
Ama87I	CYCGRG	1 cut(s)	129
AoxI	GGCC	1 cut(s)	861
ApeKI	GCWGC	5 cut(s)	556, 619, 805, 808, 972
ApoI	RAATTY	2 cut(s)	919, 995
AspLEI	GCGC	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	1021
AsuHPI	GGTGA	1 cut(s)	237
AvaI	CYCGRG	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	1021
BanI	GGYRCC	1 cut(s)	26
BanII	GRGCYC	1 cut(s)	687
BarI	GAAGNNNNNNTAC	2 cut(s)	477, 509
BauI	CACGAG	2 cut(s)	480, 1009
BbsI	GAAGAC	1 cut(s)	348
Bbv12I	GWGCWC	1 cut(s)	687
BbvCI	CCTCAGC	1 cut(s)	393
BbvI	GCAGC	5 cut(s)	568, 631, 792, 820, 984
BccI	CCATC	1 cut(s)	845
BciT130I	CCWGG	1 cut(s)	320
BciVI	GTATCC	2 cut(s)	61, 97
BclI	TGATCA	1 cut(s)	649
BcoDI	GTCTC	3 cut(s)	161, 232, 830
BfaI	CTAG	2 cut(s)	198, 926
BfmI	CTRYAG	2 cut(s)	617, 806
BfrI	CTTAAG	1 cut(s)	149
BfuI	GTATCC	2 cut(s)	61, 97
BisI	GCNGC	6 cut(s)	142, 557, 620, 806, 809, 973
BlpI	GCTNAGC	1 cut(s)	381
BlsI	GCNGC	6 cut(s)	143, 558, 621, 807, 810, 974
Bme1390I	CCNGG	1 cut(s)	320
Bme18I	GGWCC	1 cut(s)	1021
BmeT110I	CYCGRG	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	1021
BmiI	GGNNCC	2 cut(s)	28, 1022
BmrFI	CCNGG	1 cut(s)	320
BmsI	GCATC	4 cut(s)	188, 379, 559, 593
BpiI	GAAGAC	1 cut(s)	348
BpmI	CTGGAG	1 cut(s)	302
Bpu10I	CCTNAGC	1 cut(s)	393
Bpu1102I	GCTNAGC	1 cut(s)	381
BpuEI	CTTGAG	5 cut(s)	262, 560, 759, 932, 1007
BsaJI	CCNNGG	3 cut(s)	80, 579, 864
BsaXI	ACNNNNNCTCC	2 cut(s)	61, 91
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 991
Bse3DI	GCAATG	1 cut(s)	257
BseBI	CCWGG	1 cut(s)	320
BseDI	CCNNGG	3 cut(s)	80, 579, 864
BseLI	CCNNNNNNNGG	2 cut(s)	63, 991
BseMI	GCAATG	1 cut(s)	257
BseRI	GAGGAG	1 cut(s)	117
BseXI	GCAGC	5 cut(s)	568, 631, 792, 820, 984
BshFI	GGCC	1 cut(s)	863
BshNI	GGYRCC	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	687
BsiHKCI	CYCGRG	1 cut(s)	129
BslFI	GGGAC	2 cut(s)	91, 1034
BslI	CCNNNNNNNGG	2 cut(s)	63, 991
BsmAI	GTCTC	3 cut(s)	161, 232, 830
BsmBI	CGTCTC	1 cut(s)	232
BsmFI	GGGAC	2 cut(s)	91, 1034
BsnI	GGCC	1 cut(s)	863
BsoBI	CYCGRG	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	687
Bsp143I	GATC	4 cut(s)	172, 457, 649, 898
Bsp1720I	GCTNAGC	1 cut(s)	381
Bsp19I	CCATGG	1 cut(s)	864
BspACI	CCGC	3 cut(s)	74, 142, 991
BspANI	GGCC	1 cut(s)	863
BspLI	GGNNCC	2 cut(s)	28, 1022
BspMAI	CTGCAG	2 cut(s)	621, 810
BspPI	GGATC	1 cut(s)	167
BspT107I	GGYRCC	1 cut(s)	26
BspTI	CTTAAG	1 cut(s)	149
BsrBI	CCGCTC	1 cut(s)	991
BsrDI	GCAATG	1 cut(s)	257
BssECI	CCNNGG	3 cut(s)	80, 579, 864
BssMI	GATC	4 cut(s)	172, 457, 649, 898
BssSI	CACGAG	2 cut(s)	480, 1009
BssT1I	CCWWGG	3 cut(s)	80, 579, 864
Bst2BI	CACGAG	2 cut(s)	480, 1009
Bst2UI	CCWGG	1 cut(s)	320
Bst4CI	ACNGT	2 cut(s)	243, 832
BstAFI	CTTAAG	1 cut(s)	149
BstC8I	GCNNGC	2 cut(s)	522, 663
BstDSI	CCRYGG	1 cut(s)	864
BstEII	GGTNACC	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	4 cut(s)	175, 460, 652, 901
BstMAI	GTCTC	3 cut(s)	161, 232, 830
BstMBI	GATC	4 cut(s)	172, 457, 649, 898
BstMWI	GCNNNNNNNGC	4 cut(s)	526, 535, 616, 869
BstNI	CCWGG	1 cut(s)	320
BstNSI	RCATGY	1 cut(s)	665
BstPI	GGTNACC	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	318
BstSFI	CTRYAG	2 cut(s)	617, 806
BstV1I	GCAGC	5 cut(s)	568, 631, 792, 820, 984
BstV2I	GAAGAC	1 cut(s)	348
BsuI	GTATCC	2 cut(s)	61, 97
BsuRI	GGCC	1 cut(s)	863
BtgI	CCRYGG	1 cut(s)	864
BtsIMutI	CAGTG	1 cut(s)	837
Cac8I	GCNNGC	2 cut(s)	522, 663
CfoI	GCGC	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	1021
Csp6I	GTAC	1 cut(s)	38
CviAII	CATG	6 cut(s)	366, 525, 662, 736, 856, 865
CviQI	GTAC	1 cut(s)	38
DpnI	GATC	4 cut(s)	174, 459, 651, 900
DpnII	GATC	4 cut(s)	172, 457, 649, 898
EciI	GGCGGA	1 cut(s)	63
Ecl136II	GAGCTC	1 cut(s)	685
Eco130I	CCWWGG	3 cut(s)	80, 579, 864
Eco24I	GRGCYC	1 cut(s)	687
Eco47I	GGWCC	1 cut(s)	1021
Eco53kI	GAGCTC	1 cut(s)	685
Eco57I	CTGAAG	3 cut(s)	54, 335, 873
Eco88I	CYCGRG	1 cut(s)	129
Eco91I	GGTNACC	1 cut(s)	243
EcoICRI	GAGCTC	1 cut(s)	685
EcoO65I	GGTNACC	1 cut(s)	243
EcoRII	CCWGG	1 cut(s)	318
EcoT14I	CCWWGG	3 cut(s)	80, 579, 864
EcoT38I	GRGCYC	1 cut(s)	687
ErhI	CCWWGG	3 cut(s)	80, 579, 864
Esp3I	CGTCTC	1 cut(s)	232
FaeI	CATG	6 cut(s)	369, 528, 665, 739, 859, 868
FaiI	YATR	7 cut(s)	367, 526, 663, 737, 857, 866, 1018
FaqI	GGGAC	2 cut(s)	91, 1034
FatI	CATG	6 cut(s)	365, 524, 661, 735, 855, 864
FauI	CCCGC	1 cut(s)	984
FbaI	TGATCA	1 cut(s)	649
FblI	GTMKAC	1 cut(s)	729
Fnu4HI	GCNGC	6 cut(s)	142, 557, 620, 806, 809, 973
FriOI	GRGCYC	1 cut(s)	687
Fsp4HI	GCNGC	6 cut(s)	142, 557, 620, 806, 809, 973
FspBI	CTAG	2 cut(s)	198, 926
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	6 cut(s)	142, 557, 620, 806, 809, 973
GsuI	CTGGAG	1 cut(s)	302
HaeIII	GGCC	1 cut(s)	863
HhaI	GCGC	1 cut(s)	141
Hin1II	CATG	6 cut(s)	369, 528, 665, 739, 859, 868
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HindIII	AAGCTT	3 cut(s)	491, 691, 870
HinfI	GANTC	8 cut(s)	122, 299, 362, 398, 440, 451, 815, 1012
HphI	GGTGA	1 cut(s)	237
Hpy166II	GTNNAC	1 cut(s)	730
Hpy188III	TCNNGA	2 cut(s)	455, 550
Hpy8I	GTNNAC	1 cut(s)	730
HpyAV	CCTTC	2 cut(s)	745, 853
HpyCH4III	ACNGT	2 cut(s)	243, 832
HpyCH4V	TGCA	9 cut(s)	4, 161, 179, 369, 572, 619, 665, 808, 821
HpyF10VI	GCNNNNNNNGC	4 cut(s)	526, 535, 616, 869
Hsp92II	CATG	6 cut(s)	369, 528, 665, 739, 859, 868
HspAI	GCGC	1 cut(s)	139
Ksp22I	TGATCA	1 cut(s)	649
Kzo9I	GATC	4 cut(s)	172, 457, 649, 898
LmnI	GCTCC	1 cut(s)	690
Lsp1109I	GCAGC	5 cut(s)	568, 631, 792, 820, 984
LweI	GCATC	4 cut(s)	188, 379, 559, 593
MaeI	CTAG	2 cut(s)	198, 926
MaeIII	GTNAC	2 cut(s)	67, 243
MalI	GATC	4 cut(s)	174, 459, 651, 900
MbiI	CCGCTC	1 cut(s)	991
MboI	GATC	4 cut(s)	172, 457, 649, 898
MboII	GAAGA	5 cut(s)	280, 348, 449, 837, 941
MhlI	GDGCHC	1 cut(s)	687
MluCI	AATT	7 cut(s)	293, 410, 668, 893, 919, 933, 995
MlyI	GAGTC	3 cut(s)	116, 371, 1021
MseI	TTAA	2 cut(s)	150, 612
MspA1I	CMGCKG	1 cut(s)	811
MspCI	CTTAAG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	320
MvaI	CCWGG	1 cut(s)	320
MwoI	GCNNNNNNNGC	4 cut(s)	526, 535, 616, 869
NcoI	CCATGG	1 cut(s)	864
NdeII	GATC	4 cut(s)	172, 457, 649, 898
NlaIII	CATG	6 cut(s)	369, 528, 665, 739, 859, 868
NlaIV	GGNNCC	2 cut(s)	28, 1022
NmuCI	GTSAC	1 cut(s)	243
NspI	RCATGY	1 cut(s)	665
PaeI	GCATGC	1 cut(s)	665
PaeR7I	CTCGAG	1 cut(s)	129
PfeI	GAWTC	5 cut(s)	299, 398, 440, 451, 815
PfoI	TCCNGGA	1 cut(s)	318
PkrI	GCNGC	6 cut(s)	143, 558, 621, 807, 810, 974
PleI	GAGTC	3 cut(s)	116, 370, 1020
PpsI	GAGTC	3 cut(s)	116, 370, 1020
Psp124BI	GAGCTC	1 cut(s)	687
Psp6I	CCWGG	1 cut(s)	318
PspEI	GGTNACC	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	318
PspN4I	GGNNCC	2 cut(s)	28, 1022
PspPI	GGNCC	1 cut(s)	1021
PspXI	VCTCGAGB	1 cut(s)	129
PstI	CTGCAG	2 cut(s)	621, 810
PvuII	CAGCTG	1 cut(s)	811
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
SacI	GAGCTC	1 cut(s)	687
SaqAI	TTAA	2 cut(s)	150, 612
SatI	GCNGC	6 cut(s)	142, 557, 620, 806, 809, 973
Sau3AI	GATC	4 cut(s)	172, 457, 649, 898
Sau96I	GGNCC	1 cut(s)	1021
SchI	GAGTC	3 cut(s)	116, 371, 1021
ScrFI	CCNGG	1 cut(s)	320
SduI	GDGCHC	1 cut(s)	687
SfaNI	GCATC	4 cut(s)	188, 379, 559, 593
SfcI	CTRYAG	2 cut(s)	617, 806
Sfr274I	CTCGAG	1 cut(s)	129
SinI	GGWCC	1 cut(s)	1021
SlaI	CTCGAG	1 cut(s)	129
SmlI	CTYRAG	7 cut(s)	129, 149, 277, 539, 774, 947, 986
SmoI	CTYRAG	7 cut(s)	129, 149, 277, 539, 774, 947, 986
SphI	GCATGC	1 cut(s)	665
Sse9I	AATT	7 cut(s)	293, 410, 668, 893, 919, 933, 995
SsiI	CCGC	3 cut(s)	74, 142, 991
SspMI	CTAG	2 cut(s)	198, 926
SstI	GAGCTC	1 cut(s)	687
StyD4I	CCNGG	1 cut(s)	318
StyI	CCWWGG	3 cut(s)	80, 579, 864
TaaI	ACNGT	2 cut(s)	243, 832
TaqI	TCGA	2 cut(s)	130, 435
TasI	AATT	7 cut(s)	293, 410, 668, 893, 919, 933, 995
TauI	GCSGC	1 cut(s)	144
TfiI	GAWTC	5 cut(s)	299, 398, 440, 451, 815
Tru1I	TTAA	2 cut(s)	150, 612
Tru9I	TTAA	2 cut(s)	150, 612
TscAI	CASTG	1 cut(s)	837
TseFI	GTSAC	1 cut(s)	243
TseI	GCWGC	5 cut(s)	556, 619, 805, 808, 972
Tsp45I	GTSAC	1 cut(s)	243
TspDTI	ATGAA	3 cut(s)	752, 764, 872
TspRI	CASTG	1 cut(s)	837
Vha464I	CTTAAG	1 cut(s)	149
VpaK11BI	GGWCC	1 cut(s)	1021
XapI	RAATTY	2 cut(s)	919, 995
XceI	RCATGY	1 cut(s)	665
XhoI	CTCGAG	1 cut(s)	129
XmiI	GTMKAC	1 cut(s)	729
XspI	CTAG	2 cut(s)	198, 926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.