RchiOBHm_Chr5g0061061

Interactor of constitutive active ROPs

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
66389205 .. 66395319
6115 bp
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UTR
Exon/CDS
Intron
PRQ33746

Sequence Viewer

Length: 1914 bp
ATGCAAACCCCAAAAGCAAGAAATGGTGCCTCTGAAGTACCTCAACGGGTATCCCCCACTCAAAGGGTAACTCCGCCTCCAAGGGTATCCCCAACTCAAAAGGTATCCCCTACTCAAAAGGACTCTCCTCGAGTAGTGCGCCGCCAACTTAAGCCAACTGCATTGGAGACTGATCCTGCATCTACTTCAAGTCAAGCTAGACGACTATCTAAAGACAGAAGCCCAAAAGTCAATGAGAGGCGGTCACCCAGAAGTCCATTGCCTGAGAAGAAAGGCTCAAGTAGAGTATCTGAATTGGAATCTCAGATTTCTCAACTCCAGGAGGACTTGAAAAAAGCAAACAACGAGCTTCAGTCTTCCGAGTCATGCAAGAAACAAGCTCAGCAAGATGCCGAGGAATCAAAGAAGCAATTACTCGCCTTGTCATCAAAGCTCGAAGAATCTCAGCAGATTCCTGATCTTTGTATTTCTGAGGAAGCTCGTGTAATCAAGCTTCAAAAGATTTCACAAGAAAGAGAGCAAGCATGGCAGTCAGAGCTTGAGGCTGTCCAGAAACAGCACTCAGTTGATGCAGTTGCCTTGGCATCTGCCATTGATGAGATTGAGAGGCTTAAACTGCAGCTTGAAATGGTAGCTGTATCTGAGGCTGATCAGACAAAGCATGCAGAATTAGTCAATGGAGAGCTCCAAAGCTTGAAAAAAAACTTGGCAGAAACTCTTTCACTTGTAGACAACATGAAAAACGAATTGAAGGGCTGTAAGGAAGCCGAAGCTCAAGCACAGGCACAGGTTAGTCAAACCCTGCTGCAGCTGGAATCTGCAAGAAGAACAGTGGGGACGCTCAGTTCAGATGGCATGAAAGCCATGGAAGCTTACAACTCAGTTGCTTCAGAATTAGATCAGTCAAAAGCACGGGTAAATTCACTAGAAGAAATTGTTGCCAAACTCAAGGCTGACCTGAATAATGTAAGCAGCAACAATGACCTTGAGCGGGAATTTGGAGAAAAGCAAGAGTCTATGGGACCAAATGAGATCGAGGCAGAGCTTTACACCTTGAAGTCTGAAGTGAAACGACTAAAATCTACTCTTGAGACTGCTGAGACCAAATACCATGAAGAACAAATTCAGAGCACTGTGCAGATAAGAAGTGCTCATGAACTGGTAGAGCAGATGAGATCTGCTTCTAGTCAGAGAGAGTGTGAACTGGAGGATGAACTGGAGAAAACCAAAGCTGGTGTTGAAGCGTTGAAGGCCCACCTAATGGATAAGGAAACTGAGTTACAATGCATTTCAGAGGAAAACGAGGGGCTGAATTTGAAGCTTCAGAAGAGCCTGTCATGCCAGAGAGAGTATGAACTGGAAAAGGAATTGAAAGAACTGAAAAAACATGTTGCAGATTTGAAGGCTCATTTGATGGATAAAGAAACAGAATTGCAGAGTATATCAGAAGAAAATGAAATGCTGCGAGTGAAAGTCAATAAAAGCGAAATGGACAAGAGCAAAGCGAATGAGGAGGTAGTGGCGGAAGTAGAAGCGGCAAGGTGTGCTGAGAGAGAGGCTCTCATGAAGCTTGGAATTGTGATGGAGGAGGCAGATAAGAGCAGCAAGAAGGTAGCAAGGGTGACTGAACAGCTAGAGGCGGCACAGGCAGCCGGTGCAGAATTGGAGGCGGAACTGAGAAGGCTAAAGGTGCAGTCTGACCAGTGGAGGAAAGCTGCTGAGGCAGCTGCAGCCATACTTTCCTCTGGGAACGGCAAGGTCATGGAGAGAACTGTATCCATGGACAGCAACTATCATGTTCCTGGAAAGCTTGGCTCGCCTTACTCTGAAGATATGGATGATGATATGCTGAAGAAGAAAAATGGGAACATGCTGAAGAAGATAGGTGTCTTTTGGAAGAAGCCACAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families
No domains found.

Protein Analysis

637

Amino Acids

71.31

Weight (kDa)

5.6

Isoelectric Point (pI)

52.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 26
AccB7I CCANNNNNTGG 1 cut(s) 1261
AccBSI CCGCTC 1 cut(s) 991
AccI GTMKAC 1 cut(s) 729
AciI CCGC 8 cut(s) 74, 142, 241, 991, 1523, 1535, 1640, 1670
AclWI GGATC 1 cut(s) 167
AcsI RAATTY 4 cut(s) 919, 995, 1122, 1312
AcuI CTGAAG 8 cut(s) 54, 335, 873, 1083, 1307, 1848, 1871, 1895
AfaI GTAC 1 cut(s) 39
AfiI CCNNNNNNNGG 3 cut(s) 63, 991, 1261
AflII CTTAAG 1 cut(s) 149
AflIII ACRYGT 1 cut(s) 1387
AjnI CCWGG 2 cut(s) 318, 1801
AjuI GAANNNNNNNTTGG 2 cut(s) 689, 721
AloI GAACNNNNNNTCC 2 cut(s) 829, 861
Alw21I GWGCWC 3 cut(s) 687, 1133, 1153
Alw26I GTCTC 3 cut(s) 161, 1085, 1094
AlwI GGATC 1 cut(s) 167
Ama87I CYCGRG 1 cut(s) 129
AoxI GGCC 1 cut(s) 1251
ApoI RAATTY 4 cut(s) 919, 995, 1122, 1312
Asp700I GAANNNNTTC 1 cut(s) 1122
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 2 cut(s) 1022, 1252
AsuHPI GGTGA 2 cut(s) 237, 1633
AvaI CYCGRG 1 cut(s) 129
AvaII GGWCC 1 cut(s) 1022
BanI GGYRCC 1 cut(s) 26
BanII GRGCYC 1 cut(s) 687
BarI GAAGNNNNNNTAC 2 cut(s) 477, 509
BauI CACGAG 1 cut(s) 480
BbsI GAAGAC 1 cut(s) 348
Bbv12I GWGCWC 3 cut(s) 687, 1133, 1153
BbvCI CCTCAGC 1 cut(s) 1719
BccI CCATC 3 cut(s) 845, 1408, 1576
BceAI ACGGC 1 cut(s) 1768
BciT130I CCWGG 2 cut(s) 320, 1803
BciVI GTATCC 4 cut(s) 61, 97, 115, 1786
BclI TGATCA 1 cut(s) 649
BcoDI GTCTC 3 cut(s) 161, 1085, 1094
BfaI CTAG 4 cut(s) 198, 926, 1185, 1634
BfmI CTRYAG 3 cut(s) 617, 806, 1728
BfrI CTTAAG 1 cut(s) 149
BfuI GTATCC 4 cut(s) 61, 97, 115, 1786
BglII AGATCT 1 cut(s) 1175
BlpI GCTNAGC 1 cut(s) 381
Bme1390I CCNGG 2 cut(s) 320, 1803
Bme18I GGWCC 1 cut(s) 1022
BmeT110I CYCGRG 1 cut(s) 129
BmgT120I GGNCC 2 cut(s) 1022, 1252
BmiI GGNNCC 2 cut(s) 28, 1023
BmrFI CCNGG 2 cut(s) 320, 1803
BmsI GCATC 4 cut(s) 188, 379, 559, 593
BpiI GAAGAC 1 cut(s) 348
BplI GAGNNNNNCTC 4 cut(s) 1543, 1575, 1545, 1577
BpmI CTGGAG 3 cut(s) 302, 1226, 1238
Bpu10I CCTNAGC 1 cut(s) 1719
Bpu1102I GCTNAGC 1 cut(s) 381
BpuEI CTTGAG 6 cut(s) 262, 560, 759, 932, 1007, 1109
BsaI GGTCTC 1 cut(s) 1094
BsaJI CCNNGG 5 cut(s) 80, 393, 579, 864, 1779
BsaXI ACNNNNNCTCC 2 cut(s) 61, 91
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 991, 1261
Bse118I RCCGGY 1 cut(s) 1652
Bse1I ACTGG 5 cut(s) 1164, 1209, 1221, 1362, 1702
Bse3DI GCAATG 1 cut(s) 257
BseBI CCWGG 2 cut(s) 320, 1803
BseDI CCNNGG 5 cut(s) 80, 393, 579, 864, 1779
BseGI GGATG 2 cut(s) 1216, 1843
BseLI CCNNNNNNNGG 3 cut(s) 63, 991, 1261
BseMI GCAATG 1 cut(s) 257
BseNI ACTGG 5 cut(s) 1164, 1209, 1221, 1362, 1702
BseRI GAGGAG 3 cut(s) 117, 1526, 1601
BsgI GTGCAG 3 cut(s) 1157, 1677, 1712
BshFI GGCC 1 cut(s) 1253
BshNI GGYRCC 1 cut(s) 26
BsiHKAI GWGCWC 3 cut(s) 687, 1133, 1153
BsiHKCI CYCGRG 1 cut(s) 129
BsiSI CCGG 1 cut(s) 1653
BslFI GGGAC 2 cut(s) 850, 1035
BslI CCNNNNNNNGG 3 cut(s) 63, 991, 1261
BsmAI GTCTC 3 cut(s) 161, 1085, 1094
BsmFI GGGAC 2 cut(s) 850, 1035
BsnI GGCC 1 cut(s) 1253
Bso31I GGTCTC 1 cut(s) 1094
BsoBI CYCGRG 1 cut(s) 129
Bsp1286I GDGCHC 3 cut(s) 687, 1133, 1153
Bsp143I GATC 6 cut(s) 172, 457, 649, 898, 1032, 1175
Bsp1720I GCTNAGC 1 cut(s) 381
Bsp19I CCATGG 2 cut(s) 864, 1779
BspACI CCGC 8 cut(s) 74, 142, 241, 991, 1523, 1535, 1640, 1670
BspANI GGCC 1 cut(s) 1253
BspHI TCATGA 2 cut(s) 1153, 1563
BspLI GGNNCC 2 cut(s) 28, 1023
BspMAI CTGCAG 3 cut(s) 621, 810, 1732
BspPI GGATC 1 cut(s) 167
BspQI GCTCTTC 1 cut(s) 1322
BspT107I GGYRCC 1 cut(s) 26
BspTI CTTAAG 1 cut(s) 149
BspTNI GGTCTC 1 cut(s) 1094
BsrBI CCGCTC 1 cut(s) 991
BsrDI GCAATG 1 cut(s) 257
BsrFI RCCGGY 1 cut(s) 1652
BsrI ACTGG 5 cut(s) 1164, 1209, 1221, 1362, 1702
BssAI RCCGGY 1 cut(s) 1652
BssECI CCNNGG 5 cut(s) 80, 393, 579, 864, 1779
BssMI GATC 6 cut(s) 172, 457, 649, 898, 1032, 1175
BssSI CACGAG 1 cut(s) 480
BssT1I CCWWGG 4 cut(s) 80, 579, 864, 1779
Bst2BI CACGAG 1 cut(s) 480
Bst2UI CCWGG 2 cut(s) 320, 1803
Bst4CI ACNGT 3 cut(s) 832, 1135, 1774
Bst6I CTCTTC 1 cut(s) 1322
BstAFI CTTAAG 1 cut(s) 149
BstAPI GCANNNNNTGC 2 cut(s) 1544, 1655
BstC8I GCNNGC 3 cut(s) 522, 663, 1817
BstDSI CCRYGG 2 cut(s) 864, 1779
BstEII GGTNACC 1 cut(s) 243
BstF5I GGATG 2 cut(s) 1216, 1843
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 6 cut(s) 175, 460, 652, 901, 1035, 1178
BstMAI GTCTC 3 cut(s) 161, 1085, 1094
BstMBI GATC 6 cut(s) 172, 457, 649, 898, 1032, 1175
BstNI CCWGG 2 cut(s) 320, 1803
BstNSI RCATGY 3 cut(s) 665, 1391, 1873
BstPI GGTNACC 1 cut(s) 243
BstSCI CCNGG 2 cut(s) 318, 1801
BstSFI CTRYAG 3 cut(s) 617, 806, 1728
BstV2I GAAGAC 1 cut(s) 348
BstX2I RGATCY 1 cut(s) 1175
BstYI RGATCY 1 cut(s) 1175
BsuI GTATCC 4 cut(s) 61, 97, 115, 1786
BsuRI GGCC 1 cut(s) 1253
BtgI CCRYGG 2 cut(s) 864, 1779
BtsCI GGATG 2 cut(s) 1216, 1843
BtsIMutI CAGTG 3 cut(s) 837, 1131, 1709
Cac8I GCNNGC 3 cut(s) 522, 663, 1817
CciI TCATGA 2 cut(s) 1153, 1563
CfoI GCGC 1 cut(s) 141
Cfr10I RCCGGY 1 cut(s) 1652
Cfr13I GGNCC 2 cut(s) 1022, 1252
CseI GACGC 1 cut(s) 847
Csp6I GTAC 1 cut(s) 38
CviQI GTAC 1 cut(s) 38
DpnI GATC 6 cut(s) 174, 459, 651, 900, 1034, 1177
DpnII GATC 6 cut(s) 172, 457, 649, 898, 1032, 1175
Eam1104I CTCTTC 1 cut(s) 1322
EarI CTCTTC 1 cut(s) 1322
EciI GGCGGA 3 cut(s) 63, 1538, 1685
Ecl136II GAGCTC 1 cut(s) 685
Eco130I CCWWGG 4 cut(s) 80, 579, 864, 1779
Eco24I GRGCYC 1 cut(s) 687
Eco31I GGTCTC 1 cut(s) 1094
Eco47I GGWCC 1 cut(s) 1022
Eco53kI GAGCTC 1 cut(s) 685
Eco57I CTGAAG 8 cut(s) 54, 335, 873, 1083, 1307, 1848, 1871, 1895
Eco88I CYCGRG 1 cut(s) 129
Eco91I GGTNACC 1 cut(s) 243
EcoICRI GAGCTC 1 cut(s) 685
EcoO65I GGTNACC 1 cut(s) 243
EcoRII CCWGG 2 cut(s) 318, 1801
EcoT14I CCWWGG 4 cut(s) 80, 579, 864, 1779
EcoT22I ATGCAT 1 cut(s) 1289
EcoT38I GRGCYC 1 cut(s) 687
ErhI CCWWGG 4 cut(s) 80, 579, 864, 1779
FaqI GGGAC 2 cut(s) 850, 1035
FauI CCCGC 1 cut(s) 984
FbaI TGATCA 1 cut(s) 649
FblI GTMKAC 1 cut(s) 729
FokI GGATG 2 cut(s) 1223, 1850
FriOI GRGCYC 1 cut(s) 687
FspBI CTAG 4 cut(s) 198, 926, 1185, 1634
GlaI GCGC 1 cut(s) 140
GsuI CTGGAG 3 cut(s) 302, 1226, 1238
HaeIII GGCC 1 cut(s) 1253
HapII CCGG 1 cut(s) 1653
HgaI GACGC 1 cut(s) 847
HhaI GCGC 1 cut(s) 141
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HindIII AAGCTT 6 cut(s) 491, 691, 870, 1319, 1568, 1808
HinfI GANTC 8 cut(s) 122, 299, 362, 398, 440, 451, 815, 1013
HpaII CCGG 1 cut(s) 1653
HphI GGTGA 2 cut(s) 237, 1633
Hpy166II GTNNAC 2 cut(s) 730, 1202
Hpy188III TCNNGA 5 cut(s) 455, 550, 1088, 1154, 1564
Hpy8I GTNNAC 2 cut(s) 730, 1202
HpyAV CCTTC 5 cut(s) 745, 1243, 1396, 1603, 1674
HpyCH4III ACNGT 3 cut(s) 832, 1135, 1774
HspAI GCGC 1 cut(s) 139
Ksp22I TGATCA 1 cut(s) 649
Kzo9I GATC 6 cut(s) 172, 457, 649, 898, 1032, 1175
LguI GCTCTTC 1 cut(s) 1322
LmnI GCTCC 1 cut(s) 690
LweI GCATC 4 cut(s) 188, 379, 559, 593
MaeI CTAG 4 cut(s) 198, 926, 1185, 1634
MaeIII GTNAC 4 cut(s) 67, 243, 1278, 1621
MalI GATC 6 cut(s) 174, 459, 651, 900, 1034, 1177
MbiI CCGCTC 1 cut(s) 991
MboI GATC 6 cut(s) 172, 457, 649, 898, 1032, 1175
MflI RGATCY 1 cut(s) 1175
MhlI GDGCHC 3 cut(s) 687, 1133, 1153
MlyI GAGTC 3 cut(s) 116, 371, 1022
Mph1103I ATGCAT 1 cut(s) 1289
MroXI GAANNNNTTC 1 cut(s) 1122
MseI TTAA 2 cut(s) 150, 612
MspA1I CMGCKG 2 cut(s) 811, 1727
MspCI CTTAAG 1 cut(s) 149
MspI CCGG 1 cut(s) 1653
MspR9I CCNGG 2 cut(s) 320, 1803
MvaI CCWGG 2 cut(s) 320, 1803
NcoI CCATGG 2 cut(s) 864, 1779
NdeII GATC 6 cut(s) 172, 457, 649, 898, 1032, 1175
NlaIV GGNNCC 2 cut(s) 28, 1023
NmeAIII GCCGAG 1 cut(s) 418
NmuCI GTSAC 2 cut(s) 243, 1621
NsiI ATGCAT 1 cut(s) 1289
NspI RCATGY 3 cut(s) 665, 1391, 1873
PaeI GCATGC 1 cut(s) 665
PaeR7I CTCGAG 1 cut(s) 129
PagI TCATGA 2 cut(s) 1153, 1563
PciI ACATGT 1 cut(s) 1387
PciSI GCTCTTC 1 cut(s) 1322
PdmI GAANNNNTTC 1 cut(s) 1122
PfeI GAWTC 5 cut(s) 299, 398, 440, 451, 815
PflMI CCANNNNNTGG 1 cut(s) 1261
PfoI TCCNGGA 2 cut(s) 318, 1801
PleI GAGTC 3 cut(s) 116, 370, 1021
PpsI GAGTC 3 cut(s) 116, 370, 1021
PscI ACATGT 1 cut(s) 1387
Psp124BI GAGCTC 1 cut(s) 687
Psp6I CCWGG 2 cut(s) 318, 1801
PspEI GGTNACC 1 cut(s) 243
PspGI CCWGG 2 cut(s) 318, 1801
PspN4I GGNNCC 2 cut(s) 28, 1023
PspPI GGNCC 2 cut(s) 1022, 1252
PspXI VCTCGAGB 1 cut(s) 129
PstI CTGCAG 3 cut(s) 621, 810, 1732
PsuI RGATCY 1 cut(s) 1175
PvuII CAGCTG 2 cut(s) 811, 1727
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
SacI GAGCTC 1 cut(s) 687
SapI GCTCTTC 1 cut(s) 1322
SaqAI TTAA 2 cut(s) 150, 612
Sau3AI GATC 6 cut(s) 172, 457, 649, 898, 1032, 1175
Sau96I GGNCC 2 cut(s) 1022, 1252
SchI GAGTC 3 cut(s) 116, 371, 1022
ScrFI CCNGG 2 cut(s) 320, 1803
SduI GDGCHC 3 cut(s) 687, 1133, 1153
SfaNI GCATC 4 cut(s) 188, 379, 559, 593
SfcI CTRYAG 3 cut(s) 617, 806, 1728
Sfr274I CTCGAG 1 cut(s) 129
SinI GGWCC 1 cut(s) 1022
SlaI CTCGAG 1 cut(s) 129
SmlI CTYRAG 8 cut(s) 129, 149, 277, 539, 774, 947, 986, 1088
SmoI CTYRAG 8 cut(s) 129, 149, 277, 539, 774, 947, 986, 1088
SphI GCATGC 1 cut(s) 665
SsiI CCGC 8 cut(s) 74, 142, 241, 991, 1523, 1535, 1640, 1670
SspMI CTAG 4 cut(s) 198, 926, 1185, 1634
SstI GAGCTC 1 cut(s) 687
StyD4I CCNGG 2 cut(s) 318, 1801
StyI CCWWGG 4 cut(s) 80, 579, 864, 1779
TaaI ACNGT 3 cut(s) 832, 1135, 1774
TaqI TCGA 3 cut(s) 130, 435, 1035
TauI GCSGC 3 cut(s) 144, 1538, 1643
TfiI GAWTC 5 cut(s) 299, 398, 440, 451, 815
Tru1I TTAA 2 cut(s) 150, 612
Tru9I TTAA 2 cut(s) 150, 612
TscAI CASTG 3 cut(s) 837, 1138, 1709
TseFI GTSAC 2 cut(s) 243, 1621
Tsp45I GTSAC 2 cut(s) 243, 1621
TspDTI ATGAA 8 cut(s) 752, 872, 1128, 1170, 1227, 1368, 1470, 1580
TspRI CASTG 3 cut(s) 837, 1138, 1709
Van91I CCANNNNNTGG 1 cut(s) 1261
Vha464I CTTAAG 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 1022
XapI RAATTY 4 cut(s) 919, 995, 1122, 1312
XceI RCATGY 3 cut(s) 665, 1391, 1873
XhoI CTCGAG 1 cut(s) 129
XmiI GTMKAC 1 cut(s) 729
XmnI GAANNNNTTC 1 cut(s) 1122
XspI CTAG 4 cut(s) 198, 926, 1185, 1634
Zsp2I ATGCAT 1 cut(s) 1289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.