FvH4_3g33681

protein histidine kinase binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0010548
Physical Location & Seq
Reverse (-)
29200591 .. 29202039
1449 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g33681.t1

Sequence Viewer

Length: 453 bp
ATGGCTGGAGAGGATCTCAACCAGAAGCTCAATGAACTCATCAGCTCCTTGCAAAAGAAGGGCATTCTGGATGACTACTTTGATCAAGTGAAAGGATTACAAGATGAAAAAAGTCCGCAGTTTGTTAAGAACACCATAACTACATACCTTTGTGGAGCAGAAGATACGATAGCAGAGCTCACCGAAACACTAAGTGAGCTTGCAGTGAACTATCAGAGGGTGAATTATCTTGCAGATAAGCTGAAGGGAAGTAGCATGTGTGTAGGTGGCTCTCAAATGGCAGATGTTTGTGCTGAGCTCTGTGATGCAAGTGAGGCAAACCATAGAGAAGCGTGCAAGGAACTCTGTGGAGTGGTCAAGCGTGAGTATTCTACCTTGAAGGATAGTCTGAATAAGATTGTTAAGTTGGAGCAAGCAATTTATGATGAAAGGACTAAGGAGACTAACGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0007165 GO:0007231 GO:0007234 GO:0007346 GO:0008150 GO:0008152 GO:0009628 GO:0009893 GO:0009927 GO:0009966 GO:0009967 GO:0009987 GO:0010389 GO:0010562 GO:0010564 GO:0010604 GO:0010646 GO:0010647 GO:0010948 GO:0010972 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023051 GO:0023052 GO:0023056 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032872 GO:0032874 GO:0033554 GO:0034599 GO:0035556 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043408 GO:0043410 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0045930 GO:0045937 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051716 GO:0051726 GO:0060089 GO:0060255 GO:0065007 GO:0070302 GO:0070304 GO:0070887 GO:0071214 GO:0071470 GO:0071704 GO:0080036 GO:0080038 GO:0080090 GO:0080134 GO:0080135 GO:0104004 GO:0140096 GO:1901564 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902531 GO:1902533 GO:1902749 GO:1902750
KEGG Pathways
Metabolic & Signaling
ko02020 ko04011 ko04075 map02020 map04011 map04075
Pfam Domains
Protein Families
Hpt

Protein Analysis

151

Amino Acids

16.74

Weight (kDa)

4.72

Isoelectric Point (pI)

31.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hpt PF01627 53 - 128 2.5e-06 Hpt domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 116
AclWI GGATC 1 cut(s) 21
AcuI CTGAAG 1 cut(s) 263
AdeI CACNNNGTG 1 cut(s) 194
AgsI TTSAA 1 cut(s) 379
AluBI AGCT 6 cut(s) 28, 45, 178, 199, 241, 298
AluI AGCT 6 cut(s) 28, 45, 178, 199, 241, 298
Alw21I GWGCWC 2 cut(s) 180, 300
Alw26I GTCTC 1 cut(s) 434
AlwI GGATC 1 cut(s) 21
AsuHPI GGTGA 2 cut(s) 172, 232
BanII GRGCYC 2 cut(s) 180, 300
Bbv12I GWGCWC 2 cut(s) 180, 300
BclI TGATCA 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 434
BlpI GCTNAGC 1 cut(s) 294
BmsI GCATC 1 cut(s) 295
BplI GAGNNNNNCTC 1 cut(s) 32
BpmI CTGGAG 1 cut(s) 27
Bpu1102I GCTNAGC 1 cut(s) 294
BseGI GGATG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 285
BsiHKAI GWGCWC 2 cut(s) 180, 300
BsmAI GTCTC 1 cut(s) 434
BsmI GAATGC 1 cut(s) 63
Bsp1286I GDGCHC 2 cut(s) 180, 300
Bsp143I GATC 2 cut(s) 13, 82
Bsp1720I GCTNAGC 1 cut(s) 294
BspACI CCGC 1 cut(s) 116
BspCNI CTCAG 1 cut(s) 286
BspPI GGATC 1 cut(s) 21
BssMI GATC 2 cut(s) 13, 82
BstC8I GCNNGC 3 cut(s) 201, 334, 414
BstDEI CTNAG 3 cut(s) 191, 294, 435
BstF5I GGATG 1 cut(s) 76
BstKTI GATC 2 cut(s) 16, 85
BstMAI GTCTC 1 cut(s) 434
BstMBI GATC 2 cut(s) 13, 82
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstNSI RCATGY 1 cut(s) 259
BstX2I RGATCY 1 cut(s) 13
BstYI RGATCY 1 cut(s) 13
BtsCI GGATG 1 cut(s) 76
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 1 cut(s) 210
Cac8I GCNNGC 3 cut(s) 201, 334, 414
CviAII CATG 1 cut(s) 256
CviJI RGCY 8 cut(s) 5, 28, 45, 178, 199, 241, 270, 298
CviKI_1 RGCY 8 cut(s) 5, 28, 45, 178, 199, 241, 270, 298
DdeI CTNAG 3 cut(s) 191, 294, 435
DpnI GATC 2 cut(s) 15, 84
DpnII GATC 2 cut(s) 13, 82
DraIII CACNNNGTG 1 cut(s) 194
Ecl136II GAGCTC 2 cut(s) 178, 298
Eco24I GRGCYC 2 cut(s) 180, 300
Eco53kI GAGCTC 2 cut(s) 178, 298
Eco57I CTGAAG 1 cut(s) 263
EcoICRI GAGCTC 2 cut(s) 178, 298
EcoT38I GRGCYC 2 cut(s) 180, 300
FaeI CATG 1 cut(s) 259
FaiI YATR 5 cut(s) 137, 145, 257, 324, 423
FatI CATG 1 cut(s) 255
FbaI TGATCA 1 cut(s) 82
FokI GGATG 1 cut(s) 83
FriOI GRGCYC 2 cut(s) 180, 300
GsuI CTGGAG 1 cut(s) 27
Hin1II CATG 1 cut(s) 259
HphI GGTGA 2 cut(s) 172, 232
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 2 cut(s) 216, 390
Hpy188III TCNNGA 1 cut(s) 68
Hpy8I GTNNAC 1 cut(s) 208
HpyAV CCTTC 3 cut(s) 52, 238, 373
HpyCH4V TGCA 5 cut(s) 52, 203, 233, 308, 336
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 3 cut(s) 191, 294, 435
Hsp92II CATG 1 cut(s) 259
Ksp22I TGATCA 1 cut(s) 82
Kzo9I GATC 2 cut(s) 13, 82
LmnI GCTCC 3 cut(s) 50, 155, 409
LpnPI CCDG 2 cut(s) 35, 53
LweI GCATC 1 cut(s) 295
MalI GATC 2 cut(s) 15, 84
MboI GATC 2 cut(s) 13, 82
MboII GAAGA 1 cut(s) 173
MflI RGATCY 1 cut(s) 13
MhlI GDGCHC 2 cut(s) 180, 300
MluCI AATT 2 cut(s) 223, 417
MmeI TCCRAC 1 cut(s) 387
MnlI CCTC 3 cut(s) 4, 210, 307
MseI TTAA 2 cut(s) 126, 402
Mva1269I GAATGC 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 314
NdeII GATC 2 cut(s) 13, 82
NlaIII CATG 1 cut(s) 259
NspI RCATGY 1 cut(s) 259
PctI GAATGC 1 cut(s) 63
Psp124BI GAGCTC 2 cut(s) 180, 300
PsuI RGATCY 1 cut(s) 13
SacI GAGCTC 2 cut(s) 180, 300
SaqAI TTAA 2 cut(s) 126, 402
Sau3AI GATC 2 cut(s) 13, 82
SduI GDGCHC 2 cut(s) 180, 300
SetI ASST 9 cut(s) 30, 47, 150, 180, 201, 243, 268, 300, 377
SfaNI GCATC 1 cut(s) 295
Sse9I AATT 2 cut(s) 223, 417
SsiI CCGC 1 cut(s) 116
SstI GAGCTC 2 cut(s) 180, 300
TasI AATT 2 cut(s) 223, 417
Tru1I TTAA 2 cut(s) 126, 402
Tru9I TTAA 2 cut(s) 126, 402
TscAI CASTG 1 cut(s) 210
TspDTI ATGAA 3 cut(s) 48, 120, 441
TspRI CASTG 1 cut(s) 210
XceI RCATGY 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.