Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0010548

Physical Location & Seq

Genomic Coordinates Reverse (-)

66972985 .. 66975353

Gene Structure 2369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035440

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTCGATGGCATTAGCAGTTCTATGTTGTAGCATATCTGCAATAATCGAGAAGCGATGGTTACGTGTGGTTAAGAGCCATGGTTTACTTGACAAGCCCGACAAAACTATTCCCATTGCAATATTTTGGTTGCTACCGCAGTATCTTCTCCTTGGAGGTGTTTGTGGTCTTTTGGAGATTAGCATTGTTCATTTCTTCACTCATATGGTCCTTCACTGGCCCAAAATAGAAAAAGATGATGGTGTGCAGGCAAAGGAAGAATCCAAGCCTATAGAAAAAGACATTGAGGATTCAAGAGCACACATAATTAAGTCACCATTGGATAAGGGCATTCTGGGTGACTACTTCGATCAAGTGAAGTGGTTACAAGACGAACAAAATCCAAAATTTGTTACAGAAGTGATAACTCTTTTCTTTGCTGAAGTAGACAATGCCATAGCAGAACTCACAACAATTCTTAGAGAACCTGAAGTGAACTATCCCAGGGTGAGAGAGCTTGCTAATAGAGTCAATATGGGTGGTTCTCGGGTGGACAATGCCTGCAGTGAGCTCTGCGGTGCAAGTGAGGCAAAGAACAGAGCAAAGTGCCTTGAGAGCTTTGAGGTGCTTAATCGTGAATATCTAACCTTGAAGGAGAATCTGAACAACATTGTTCAGATGGAGCGCACAATTTATGATAATAAGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0007165 GO:0007231 GO:0007234 GO:0007346 GO:0008150 GO:0008152 GO:0009628 GO:0009893 GO:0009927 GO:0009966 GO:0009967 GO:0009987 GO:0010389 GO:0010562 GO:0010564 GO:0010604 GO:0010646 GO:0010647 GO:0010948 GO:0010972 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023051 GO:0023052 GO:0023056 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032872 GO:0032874 GO:0033554 GO:0034599 GO:0035556 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043408 GO:0043410 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0045930 GO:0045937 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051716 GO:0051726 GO:0060089 GO:0060255 GO:0065007 GO:0070302 GO:0070304 GO:0070887 GO:0071214 GO:0071470 GO:0071704 GO:0080036 GO:0080038 GO:0080090 GO:0080134 GO:0080135 GO:0104004 GO:0140096 GO:1901564 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902531 GO:1902533 GO:1902749 GO:1902750

KEGG Pathways

Metabolic & Signaling

ko02020 ko04011 ko04075 map02020 map04011 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

230

Amino Acids

26.13

Weight (kDa)

5.49

Isoelectric Point (pI)

47.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010548)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33681
malus_domestica	MD11G1160500.v1.1
prunus_persica	Prupe.6G123100_v2.0.a1 Prupe.6G123100_v2.0.a1 Prupe.6G123200_v2.0.a1 Prupe.6G123300_v2.0.a1 Prupe.6G123400_v2.0.a1 Prupe.6G123600_v2.0.a1 Prupe.6G123700_v2.0.a1
pyrus_communis	pycom11g13100
rosa_chinensis	RchiOBHm_Chr5g0061201
rosa_laevigata	RLG00000035439 RLG00000035440
rosa_multiflora	Rmu_sc0001366.1_g000018
rosa_roxburghii	Rroxscaffold_1G00019510
rosa_rugosa	Rorug05G0338600
rosa_samantha	Rh5AG399400 Rh5BG412600 Rh5CG437300 Rh5DG426900
rosa_wichuraiana	Rw5G037680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	426
AciI	CCGC	2 cut(s)	137, 555
AcsI	RAATTY	1 cut(s)	386
AcuI	CTGAAG	2 cut(s)	441, 489
AflIII	ACRYGT	1 cut(s)	64
AgsI	TTSAA	2 cut(s)	294, 631
AjnI	CCWGG	1 cut(s)	482
AluBI	AGCT	3 cut(s)	496, 550, 597
AluI	AGCT	3 cut(s)	496, 550, 597
Alw21I	GWGCWC	2 cut(s)	301, 552
Ama87I	CYCGRG	1 cut(s)	525
AoxI	GGCC	1 cut(s)	218
ApoI	RAATTY	1 cut(s)	386
AspLEI	GCGC	1 cut(s)	666
AspS9I	GGNCC	2 cut(s)	208, 219
AsuHPI	GGTGA	3 cut(s)	306, 350, 499
AvaI	CYCGRG	1 cut(s)	525
AvaII	GGWCC	1 cut(s)	208
BaeI	ACNNNNGTAYC	2 cut(s)	125, 158
BanII	GRGCYC	1 cut(s)	552
Bbv12I	GWGCWC	2 cut(s)	301, 552
BccI	CCATC	3 cut(s)	51, 233, 652
BciT130I	CCWGG	1 cut(s)	484
BfmI	CTRYAG	2 cut(s)	270, 541
Bme1390I	CCNGG	1 cut(s)	484
Bme18I	GGWCC	1 cut(s)	208
BmeT110I	CYCGRG	1 cut(s)	525
BmgT120I	GGNCC	2 cut(s)	208, 219
BmrFI	CCNGG	1 cut(s)	484
BpuEI	CTTGAG	1 cut(s)	611
BsaAI	YACGTR	1 cut(s)	65
BsaJI	CCNNGG	4 cut(s)	79, 151, 482, 483
Bse1I	ACTGG	1 cut(s)	221
Bse3DI	GCAATG	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	484
BseDI	CCNNGG	4 cut(s)	79, 151, 482, 483
BseMI	GCAATG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	221
BsgI	GTGCAG	1 cut(s)	266
BshFI	GGCC	1 cut(s)	220
BsiHKAI	GWGCWC	2 cut(s)	301, 552
BsiHKCI	CYCGRG	1 cut(s)	525
BsmI	GAATGC	1 cut(s)	330
BsnI	GGCC	1 cut(s)	220
BsoBI	CYCGRG	1 cut(s)	525
Bsp1286I	GDGCHC	2 cut(s)	301, 552
Bsp143I	GATC	1 cut(s)	349
Bsp19I	CCATGG	1 cut(s)	79
BspACI	CCGC	2 cut(s)	137, 555
BspANI	GGCC	1 cut(s)	220
BspMAI	CTGCAG	1 cut(s)	545
BsrDI	GCAATG	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	221
BssECI	CCNNGG	4 cut(s)	79, 151, 482, 483
BssMI	GATC	1 cut(s)	349
BssT1I	CCWWGG	2 cut(s)	79, 151
Bst2UI	CCWGG	1 cut(s)	484
BstBAI	YACGTR	1 cut(s)	65
BstC8I	GCNNGC	3 cut(s)	249, 498, 541
BstDEI	CTNAG	1 cut(s)	458
BstDSI	CCRYGG	1 cut(s)	79
BstHHI	GCGC	1 cut(s)	666
BstKTI	GATC	1 cut(s)	352
BstMBI	GATC	1 cut(s)	349
BstMWI	GCNNNNNNNGC	2 cut(s)	566, 594
BstNI	CCWGG	1 cut(s)	484
BstSCI	CCNGG	1 cut(s)	482
BstSFI	CTRYAG	2 cut(s)	270, 541
BsuRI	GGCC	1 cut(s)	220
BtgI	CCRYGG	1 cut(s)	79
BtgZI	GCGATG	1 cut(s)	70
BtsI	GCAGTG	1 cut(s)	550
BtsIMutI	CAGTG	2 cut(s)	214, 550
Cac8I	GCNNGC	3 cut(s)	249, 498, 541
CfoI	GCGC	1 cut(s)	666
Cfr13I	GGNCC	2 cut(s)	208, 219
CspCI	CAANNNNNGTGG	4 cut(s)	341, 376, 499, 534
CviAII	CATG	1 cut(s)	80
CviJI	RGCY	7 cut(s)	78, 97, 220, 268, 496, 550, 597
CviKI_1	RGCY	7 cut(s)	78, 97, 220, 268, 496, 550, 597
DdeI	CTNAG	1 cut(s)	458
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
Ecl136II	GAGCTC	1 cut(s)	550
Eco130I	CCWWGG	2 cut(s)	79, 151
Eco24I	GRGCYC	1 cut(s)	552
Eco47I	GGWCC	1 cut(s)	208
Eco53kI	GAGCTC	1 cut(s)	550
Eco57I	CTGAAG	2 cut(s)	441, 489
Eco88I	CYCGRG	1 cut(s)	525
EcoICRI	GAGCTC	1 cut(s)	550
EcoRII	CCWGG	1 cut(s)	482
EcoT14I	CCWWGG	2 cut(s)	79, 151
EcoT38I	GRGCYC	1 cut(s)	552
ErhI	CCWWGG	2 cut(s)	79, 151
FaeI	CATG	1 cut(s)	83
FatI	CATG	1 cut(s)	79
FauNDI	CATATG	1 cut(s)	204
FblI	GTMKAC	1 cut(s)	426
FriOI	GRGCYC	1 cut(s)	552
GlaI	GCGC	1 cut(s)	665
HaeIII	GGCC	1 cut(s)	220
HhaI	GCGC	1 cut(s)	666
Hin1II	CATG	1 cut(s)	83
Hin6I	GCGC	1 cut(s)	664
HinP1I	GCGC	1 cut(s)	664
HinfI	GANTC	4 cut(s)	260, 290, 507, 637
HphI	GGTGA	3 cut(s)	306, 350, 499
Hpy166II	GTNNAC	4 cut(s)	86, 427, 475, 532
Hpy188I	TCNGA	3 cut(s)	642, 657, 689
Hpy188III	TCNNGA	3 cut(s)	49, 294, 614
Hpy8I	GTNNAC	4 cut(s)	86, 427, 475, 532
HpyAV	CCTTC	2 cut(s)	221, 625
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	5 cut(s)	41, 119, 247, 543, 560
HpyF10VI	GCNNNNNNNGC	2 cut(s)	566, 594
HpyF3I	CTNAG	1 cut(s)	458
HpySE526I	ACGT	1 cut(s)	64
Hsp92II	CATG	1 cut(s)	83
HspAI	GCGC	1 cut(s)	664
Kzo9I	GATC	1 cut(s)	349
LmnI	GCTCC	1 cut(s)	661
LpnPI	CCDG	7 cut(s)	202, 233, 320, 469, 480, 496, 553
MaeII	ACGT	1 cut(s)	64
MaeIII	GTNAC	5 cut(s)	60, 312, 338, 363, 391
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MboII	GAAGA	3 cut(s)	137, 187, 269
MhlI	GDGCHC	2 cut(s)	301, 552
MluCI	AATT	4 cut(s)	306, 386, 453, 669
MlyI	GAGTC	1 cut(s)	516
MnlI	CCTC	4 cut(s)	149, 280, 559, 595
MseI	TTAA	3 cut(s)	72, 309, 609
MslI	CAYNNNNRTG	1 cut(s)	203
MspR9I	CCNGG	1 cut(s)	484
Mva1269I	GAATGC	1 cut(s)	330
MvaI	CCWGG	1 cut(s)	484
MwoI	GCNNNNNNNGC	2 cut(s)	566, 594
NcoI	CCATGG	1 cut(s)	79
NdeI	CATATG	1 cut(s)	204
NdeII	GATC	1 cut(s)	349
NlaIII	CATG	1 cut(s)	83
NmuCI	GTSAC	2 cut(s)	312, 338
PasI	CCCWGGG	1 cut(s)	483
PctI	GAATGC	1 cut(s)	330
PfeI	GAWTC	3 cut(s)	260, 290, 637
PleI	GAGTC	1 cut(s)	515
PpsI	GAGTC	1 cut(s)	515
Ppu21I	YACGTR	1 cut(s)	65
Psp124BI	GAGCTC	1 cut(s)	552
Psp6I	CCWGG	1 cut(s)	482
PspGI	CCWGG	1 cut(s)	482
PspPI	GGNCC	2 cut(s)	208, 219
PstI	CTGCAG	1 cut(s)	545
RseI	CAYNNNNRTG	1 cut(s)	203
SacI	GAGCTC	1 cut(s)	552
SaqAI	TTAA	3 cut(s)	72, 309, 609
Sau3AI	GATC	1 cut(s)	349
Sau96I	GGNCC	2 cut(s)	208, 219
SchI	GAGTC	1 cut(s)	516
ScrFI	CCNGG	1 cut(s)	484
SduI	GDGCHC	2 cut(s)	301, 552
SetI	ASST	9 cut(s)	67, 160, 469, 498, 552, 599, 606, 629, 687
SfcI	CTRYAG	2 cut(s)	270, 541
SinI	GGWCC	1 cut(s)	208
SmiMI	CAYNNNNRTG	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
Sse9I	AATT	4 cut(s)	306, 386, 453, 669
SsiI	CCGC	2 cut(s)	137, 555
SspI	AATATT	1 cut(s)	123
SstI	GAGCTC	1 cut(s)	552
StyD4I	CCNGG	1 cut(s)	482
StyI	CCWWGG	2 cut(s)	79, 151
TaiI	ACGT	1 cut(s)	67
TaqI	TCGA	3 cut(s)	5, 48, 348
TasI	AATT	4 cut(s)	306, 386, 453, 669
TfiI	GAWTC	3 cut(s)	260, 290, 637
Tru1I	TTAA	3 cut(s)	72, 309, 609
Tru9I	TTAA	3 cut(s)	72, 309, 609
TscAI	CASTG	2 cut(s)	221, 550
TseFI	GTSAC	2 cut(s)	312, 338
Tsp45I	GTSAC	2 cut(s)	312, 338
TspDTI	ATGAA	1 cut(s)	179
TspRI	CASTG	2 cut(s)	221, 550
VpaK11BI	GGWCC	1 cut(s)	208
XapI	RAATTY	1 cut(s)	386
XmiI	GTMKAC	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.