Rorug05G0338600

protein histidine kinase binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0010548
Physical Location & Seq
Forward (+)
41128874 .. 41129650
777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0338600.1

Sequence Viewer

Length: 777 bp
ATGCTCTCTCTTTCTCTAGAGAGAAAAACCCTAAGGCTGCCACCTGCCTTGATTGGAGGCGGCGGTACTGCAAATCTATTGACTCTTGGCATAGAGGTTTTCCGGCTACGCAGTGGCTCGGTTAATTGGGGCTGGAAAGGTGGCGGCTCGCCTCTTTCTTCTCTTCTACTTGGTGGCGACGGCGAATGGTTTCGTCGATGCCCCATGATGGCGGTGTCAAGCGGCGCTGGGCCGTTCAATCTGGGCGAGGTCGTATGGGAACTGGTTGAAGGCTGGGGTCGAGGCAATCTGGGTTCAGATCCGACCAAGGACATTTTGGAGAAGGACGACGTCGGTGATTATGGGGGACTTTTCTGGTCTGATTTTGTTTTGATTGCCGGCGGTCATGGTGATGAGGTCGAGAGGCCATGGGTCCGATGCAGCATCGGCGTCTTCCAGATTGGGTTGTCTCTGACCGTGGGCGTTGGCGGTGGCGTTACAAGTAGTAGTGGTAGCTTTTGCGCCGGTGCTGATGCTGACGCTTGGGCATGCGGCGTCTCAGGTGCTAGAGCGTCAAGGCTGAGTGGCTGGGCTCCACACAGCAAGTTGGGCCTGATGGTGGATGTTGGGGAGGCTAGGGTTTCTCCTAACGTGGCTTGCTGGGCTCTAGGGTTTACCCAAATTGGGCCTTGGAGGTGGTTGATTTCGCCAGGGTTATGGGTCCATTTTGGGTCGTCTTCTGGTGCAGAGGATAATGTAGAAGGTGGTCTGACACCTTCTACTGCTATTTTAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0007165 GO:0007231 GO:0007234 GO:0007346 GO:0008150 GO:0008152 GO:0009628 GO:0009893 GO:0009927 GO:0009966 GO:0009967 GO:0009987 GO:0010389 GO:0010562 GO:0010564 GO:0010604 GO:0010646 GO:0010647 GO:0010948 GO:0010972 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023051 GO:0023052 GO:0023056 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032872 GO:0032874 GO:0033554 GO:0034599 GO:0035556 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043408 GO:0043410 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0045930 GO:0045937 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051716 GO:0051726 GO:0060089 GO:0060255 GO:0065007 GO:0070302 GO:0070304 GO:0070887 GO:0071214 GO:0071470 GO:0071704 GO:0080036 GO:0080038 GO:0080090 GO:0080134 GO:0080135 GO:0104004 GO:0140096 GO:1901564 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902531 GO:1902533 GO:1902749 GO:1902750
KEGG Pathways
Metabolic & Signaling
ko02020 ko04011 ko04075 map02020 map04011 map04075
Pfam Domains
Protein Families
Hpt

Protein Analysis

258

Amino Acids

26.86

Weight (kDa)

5.08

Isoelectric Point (pI)

37.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 52
AatII GACGTC 1 cut(s) 333
Acc36I ACCTGC 1 cut(s) 52
AciI CCGC 8 cut(s) 60, 63, 144, 212, 222, 381, 468, 531
AclWI GGATC 1 cut(s) 293
AcyI GRCGYC 3 cut(s) 330, 429, 534
AfaI GTAC 1 cut(s) 67
AfiI CCNNNNNNNGG 3 cut(s) 208, 598, 663
AgsI TTSAA 2 cut(s) 238, 269
AjnI CCWGG 1 cut(s) 688
AluBI AGCT 1 cut(s) 495
AluI AGCT 1 cut(s) 495
Alw26I GTCTC 2 cut(s) 453, 541
AlwI GGATC 1 cut(s) 293
AoxI GGCC 4 cut(s) 230, 404, 589, 665
ApeKI GCWGC 2 cut(s) 37, 420
Asp700I GAANNNNTTC 1 cut(s) 189
AspLEI GCGC 2 cut(s) 227, 503
AspS9I GGNCC 5 cut(s) 230, 412, 589, 665, 700
AsuHPI GGTGA 2 cut(s) 347, 401
AvaII GGWCC 2 cut(s) 412, 700
AxyI CCTNAGG 1 cut(s) 32
BanII GRGCYC 2 cut(s) 574, 646
BbsI GAAGAC 2 cut(s) 424, 708
BbvI GCAGC 2 cut(s) 24, 432
BccI CCATC 2 cut(s) 202, 589
BceAI ACGGC 2 cut(s) 196, 217
BciT130I CCWGG 1 cut(s) 690
BcoDI GTCTC 2 cut(s) 453, 541
BfaI CTAG 4 cut(s) 17, 546, 615, 647
BfoI RGCGCY 1 cut(s) 228
BfuAI ACCTGC 1 cut(s) 52
BisI GCNGC 6 cut(s) 38, 61, 145, 223, 421, 532
BlsI GCNGC 6 cut(s) 39, 62, 146, 224, 422, 533
Bme1390I CCNGG 1 cut(s) 690
Bme18I GGWCC 2 cut(s) 412, 700
BmgT120I GGNCC 5 cut(s) 230, 412, 589, 665, 700
BmiI GGNNCC 3 cut(s) 413, 573, 701
BmrFI CCNGG 1 cut(s) 690
BmsI GCATC 4 cut(s) 188, 407, 432, 502
BpiI GAAGAC 2 cut(s) 424, 708
BsaHI GRCGYC 3 cut(s) 330, 429, 534
BsaJI CCNNGG 5 cut(s) 306, 407, 456, 668, 689
Bsc4I CCNNNNNNNGG 3 cut(s) 208, 598, 663
Bse118I RCCGGY 2 cut(s) 377, 503
Bse1I ACTGG 1 cut(s) 267
Bse21I CCTNAGG 1 cut(s) 32
BseBI CCWGG 1 cut(s) 690
BseDI CCNNGG 5 cut(s) 306, 407, 456, 668, 689
BseGI GGATG 1 cut(s) 607
BseLI CCNNNNNNNGG 3 cut(s) 208, 598, 663
BseMII CTCAG 2 cut(s) 551, 552
BseNI ACTGG 1 cut(s) 267
BseXI GCAGC 2 cut(s) 24, 432
BseYI CCCAGC 4 cut(s) 227, 273, 567, 639
BsgI GTGCAG 1 cut(s) 744
BshFI GGCC 4 cut(s) 232, 406, 591, 667
BsiSI CCGG 3 cut(s) 103, 378, 504
BslFI GGGAC 1 cut(s) 360
BslI CCNNNNNNNGG 3 cut(s) 208, 598, 663
BsmAI GTCTC 2 cut(s) 453, 541
BsmBI CGTCTC 1 cut(s) 541
BsmFI GGGAC 1 cut(s) 360
BsnI GGCC 4 cut(s) 232, 406, 591, 667
Bsp1286I GDGCHC 2 cut(s) 574, 646
Bsp143I GATC 1 cut(s) 298
Bsp19I CCATGG 1 cut(s) 407
BspACI CCGC 8 cut(s) 60, 63, 144, 212, 222, 381, 468, 531
BspANI GGCC 4 cut(s) 232, 406, 591, 667
BspCNI CTCAG 2 cut(s) 551, 552
BspLI GGNNCC 3 cut(s) 413, 573, 701
BspMI ACCTGC 1 cut(s) 52
BspPI GGATC 1 cut(s) 293
BsrFI RCCGGY 2 cut(s) 377, 503
BsrI ACTGG 1 cut(s) 267
BssAI RCCGGY 2 cut(s) 377, 503
BssECI CCNNGG 5 cut(s) 306, 407, 456, 668, 689
BssMI GATC 1 cut(s) 298
BssNI GRCGYC 3 cut(s) 330, 429, 534
BssT1I CCWWGG 3 cut(s) 306, 407, 668
Bst2UI CCWGG 1 cut(s) 690
Bst4CI ACNGT 1 cut(s) 457
Bst6I CTCTTC 1 cut(s) 168
BstACI GRCGYC 3 cut(s) 330, 429, 534
BstC8I GCNNGC 4 cut(s) 149, 379, 529, 637
BstDEI CTNAG 3 cut(s) 32, 538, 560
BstDSI CCRYGG 2 cut(s) 407, 456
BstF5I GGATG 1 cut(s) 607
BstH2I RGCGCY 1 cut(s) 228
BstHHI GCGC 2 cut(s) 227, 503
BstKTI GATC 1 cut(s) 301
BstMAI GTCTC 2 cut(s) 453, 541
BstMBI GATC 1 cut(s) 298
BstMWI GCNNNNNNNGC 3 cut(s) 426, 588, 641
BstNI CCWGG 1 cut(s) 690
BstNSI RCATGY 1 cut(s) 531
BstSCI CCNGG 1 cut(s) 688
BstV1I GCAGC 2 cut(s) 24, 432
BstV2I GAAGAC 2 cut(s) 424, 708
BstX2I RGATCY 1 cut(s) 298
BstXI CCANNNNNNTGG 1 cut(s) 696
BstYI RGATCY 1 cut(s) 298
Bsu36I CCTNAGG 1 cut(s) 32
BsuRI GGCC 4 cut(s) 232, 406, 591, 667
BtgI CCRYGG 2 cut(s) 407, 456
BtsCI GGATG 1 cut(s) 607
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 1 cut(s) 118
BveI ACCTGC 1 cut(s) 52
Cac8I GCNNGC 4 cut(s) 149, 379, 529, 637
CfoI GCGC 2 cut(s) 227, 503
Cfr10I RCCGGY 2 cut(s) 377, 503
Cfr13I GGNCC 5 cut(s) 230, 412, 589, 665, 700
CseI GACGC 4 cut(s) 418, 523, 527, 540
Csp6I GTAC 1 cut(s) 66
CspCI CAANNNNNGTGG 2 cut(s) 30, 65
CviAII CATG 4 cut(s) 205, 386, 408, 528
CviQI GTAC 1 cut(s) 66
DdeI CTNAG 3 cut(s) 32, 538, 560
DpnI GATC 1 cut(s) 300
DpnII GATC 1 cut(s) 298
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco130I CCWWGG 3 cut(s) 306, 407, 668
Eco24I GRGCYC 2 cut(s) 574, 646
Eco47I GGWCC 2 cut(s) 412, 700
Eco81I CCTNAGG 1 cut(s) 32
EcoRII CCWGG 1 cut(s) 688
EcoT14I CCWWGG 3 cut(s) 306, 407, 668
EcoT38I GRGCYC 2 cut(s) 574, 646
ErhI CCWWGG 3 cut(s) 306, 407, 668
Esp3I CGTCTC 1 cut(s) 541
FaeI CATG 4 cut(s) 208, 389, 411, 531
FaiI YATR 8 cut(s) 92, 206, 256, 342, 387, 409, 529, 697
FaqI GGGAC 1 cut(s) 360
FatI CATG 4 cut(s) 204, 385, 407, 527
Fnu4HI GCNGC 6 cut(s) 38, 61, 145, 223, 421, 532
FokI GGATG 1 cut(s) 614
FriOI GRGCYC 2 cut(s) 574, 646
Fsp4HI GCNGC 6 cut(s) 38, 61, 145, 223, 421, 532
FspBI CTAG 4 cut(s) 17, 546, 615, 647
GlaI GCGC 2 cut(s) 226, 502
GluI GCNGC 6 cut(s) 38, 61, 145, 223, 421, 532
GsaI CCCAGC 4 cut(s) 231, 277, 571, 643
HaeII RGCGCY 1 cut(s) 228
HaeIII GGCC 4 cut(s) 232, 406, 591, 667
HapII CCGG 3 cut(s) 103, 378, 504
HgaI GACGC 4 cut(s) 418, 523, 527, 540
HhaI GCGC 2 cut(s) 227, 503
Hin1I GRCGYC 3 cut(s) 330, 429, 534
Hin1II CATG 4 cut(s) 208, 389, 411, 531
Hin6I GCGC 2 cut(s) 225, 501
HinP1I GCGC 2 cut(s) 225, 501
HinfI GANTC 1 cut(s) 82
HpaII CCGG 3 cut(s) 103, 378, 504
HphI GGTGA 2 cut(s) 347, 401
Hpy166II GTNNAC 1 cut(s) 654
Hpy188I TCNGA 6 cut(s) 298, 303, 361, 416, 453, 750
Hpy188III TCNNGA 3 cut(s) 17, 400, 436
Hpy8I GTNNAC 1 cut(s) 654
Hpy99I CGWCG 4 cut(s) 182, 198, 332, 335
HpyAV CCTTC 4 cut(s) 263, 316, 734, 765
HpyCH4III ACNGT 1 cut(s) 457
HpyCH4IV ACGT 2 cut(s) 330, 630
HpyCH4V TGCA 3 cut(s) 71, 420, 725
HpyF10VI GCNNNNNNNGC 3 cut(s) 426, 588, 641
HpyF3I CTNAG 3 cut(s) 32, 538, 560
HpySE526I ACGT 2 cut(s) 330, 630
Hsp92I GRCGYC 3 cut(s) 330, 429, 534
Hsp92II CATG 4 cut(s) 208, 389, 411, 531
HspAI GCGC 2 cut(s) 225, 501
KroI GCCGGC 1 cut(s) 377
KroNI GCCGGC 1 cut(s) 379
Kzo9I GATC 1 cut(s) 298
LmnI GCTCC 1 cut(s) 577
Lsp1109I GCAGC 2 cut(s) 24, 432
LweI GCATC 4 cut(s) 188, 407, 432, 502
MaeI CTAG 4 cut(s) 17, 546, 615, 647
MaeII ACGT 2 cut(s) 330, 630
MaeIII GTNAC 1 cut(s) 475
MalI GATC 1 cut(s) 300
MboI GATC 1 cut(s) 298
MboII GAAGA 4 cut(s) 150, 155, 424, 708
MflI RGATCY 1 cut(s) 298
MhlI GDGCHC 2 cut(s) 574, 646
MluCI AATT 3 cut(s) 124, 660, 771
MlyI GAGTC 1 cut(s) 76
MmeI TCCRAC 1 cut(s) 326
MroNI GCCGGC 1 cut(s) 377
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 3 cut(s) 123, 770, 775
MslI CAYNNNNRTG 1 cut(s) 390
MspI CCGG 3 cut(s) 103, 378, 504
MspR9I CCNGG 1 cut(s) 690
MvaI CCWGG 1 cut(s) 690
MwoI GCNNNNNNNGC 3 cut(s) 426, 588, 641
NaeI GCCGGC 1 cut(s) 379
NcoI CCATGG 1 cut(s) 407
NdeII GATC 1 cut(s) 298
NgoMIV GCCGGC 1 cut(s) 377
NlaIII CATG 4 cut(s) 208, 389, 411, 531
NlaIV GGNNCC 3 cut(s) 413, 573, 701
NspI RCATGY 1 cut(s) 531
PaeI GCATGC 1 cut(s) 531
PaqCI CACCTGC 1 cut(s) 52
PdiI GCCGGC 1 cut(s) 379
PdmI GAANNNNTTC 1 cut(s) 189
PflFI GACNNNGTC 1 cut(s) 329
PkrI GCNGC 6 cut(s) 39, 62, 146, 224, 422, 533
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
Psp6I CCWGG 1 cut(s) 688
PspFI CCCAGC 4 cut(s) 227, 273, 567, 639
PspGI CCWGG 1 cut(s) 688
PspN4I GGNNCC 3 cut(s) 413, 573, 701
PspPI GGNCC 5 cut(s) 230, 412, 589, 665, 700
PsuI RGATCY 1 cut(s) 298
PsyI GACNNNGTC 1 cut(s) 329
RsaI GTAC 1 cut(s) 67
RsaNI GTAC 1 cut(s) 66
RseI CAYNNNNRTG 1 cut(s) 390
SaqAI TTAA 3 cut(s) 123, 770, 775
SatI GCNGC 6 cut(s) 38, 61, 145, 223, 421, 532
Sau3AI GATC 1 cut(s) 298
Sau96I GGNCC 5 cut(s) 230, 412, 589, 665, 700
SchI GAGTC 1 cut(s) 76
ScrFI CCNGG 1 cut(s) 690
SduI GDGCHC 2 cut(s) 574, 646
SfaNI GCATC 4 cut(s) 188, 407, 432, 502
SgrAI CRCCGGYG 1 cut(s) 503
SinI GGWCC 2 cut(s) 412, 700
SmiMI CAYNNNNRTG 1 cut(s) 390
SphI GCATGC 1 cut(s) 531
Sse9I AATT 3 cut(s) 124, 660, 771
SsiI CCGC 8 cut(s) 60, 63, 144, 212, 222, 381, 468, 531
SspMI CTAG 4 cut(s) 17, 546, 615, 647
StyD4I CCNGG 1 cut(s) 688
StyI CCWWGG 3 cut(s) 306, 407, 668
TaaI ACNGT 1 cut(s) 457
TaiI ACGT 2 cut(s) 333, 633
TaqI TCGA 3 cut(s) 196, 280, 399
TasI AATT 3 cut(s) 124, 660, 771
TauI GCSGC 4 cut(s) 63, 147, 225, 534
Tru1I TTAA 3 cut(s) 123, 770, 775
Tru9I TTAA 3 cut(s) 123, 770, 775
TscAI CASTG 1 cut(s) 118
TseI GCWGC 2 cut(s) 37, 420
TspRI CASTG 1 cut(s) 118
Tth111I GACNNNGTC 1 cut(s) 329
VpaK11BI GGWCC 2 cut(s) 412, 700
XbaI TCTAGA 1 cut(s) 16
XceI RCATGY 1 cut(s) 531
XcmI CCANNNNNNNNNTGG 1 cut(s) 313
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 4 cut(s) 17, 546, 615, 647
ZraI GACGTC 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.