Prupe.6G123700_v2.0.a1

protein histidine kinase binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0010548
Physical Location & Seq
Forward (+)
9250450 .. 9252503
2054 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G123700.1

Sequence Viewer

Length: 456 bp
ATGGCTGCGAAAGGGAAGGATCTTAGCCAACAGCTTGAGGAACTCATCAGCTCCTTGCAAGAACAAGGCATTTTGACCGACTACTTTGACGAACTAAGAGGGTTACAAGATGACAACAACCCTCGCTTGGTTGACGAAATTATCACCATCTTCCTTCGTGTAGCTGAAGATTACAGAGCCGAACTCACAAGAAATCTGAGTGAGCCCGATGTCAACTATTCTGAGGTGCATAAACTCGCAACCTGGTTTAAAGGCAGTACCACAAGTAATGCCTGTGGCCGGGTTGCCCTTGCCTGTCAAGAGCTCGTTGATGCAAGTGAAGCAAAGAACAAAGAAGGGTGCCTTGTGGCTCTTGAAGCTGTCAACCGTGAATATCTTGTCGCCAAAGAGAATTTGAATCGCATTGTTGGGATGGAACGTGAAATTTATAACATGAGGCTGCCAAAAGCAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0007165 GO:0007231 GO:0007234 GO:0007346 GO:0008150 GO:0008152 GO:0009628 GO:0009893 GO:0009927 GO:0009966 GO:0009967 GO:0009987 GO:0010389 GO:0010562 GO:0010564 GO:0010604 GO:0010646 GO:0010647 GO:0010948 GO:0010972 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023051 GO:0023052 GO:0023056 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032872 GO:0032874 GO:0033554 GO:0034599 GO:0035556 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043408 GO:0043410 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0045930 GO:0045937 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051716 GO:0051726 GO:0060089 GO:0060255 GO:0065007 GO:0070302 GO:0070304 GO:0070887 GO:0071214 GO:0071470 GO:0071704 GO:0080036 GO:0080038 GO:0080090 GO:0080134 GO:0080135 GO:0104004 GO:0140096 GO:1901564 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902531 GO:1902533 GO:1902749 GO:1902750
KEGG Pathways
Metabolic & Signaling
ko02020 ko04011 ko04075 map02020 map04011 map04075
Pfam Domains
Protein Families
Hpt

Protein Analysis

152

Amino Acids

17.05

Weight (kDa)

4.76

Isoelectric Point (pI)

40.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 429
AccB1I GGYRCC 1 cut(s) 339
AclWI GGATC 1 cut(s) 27
AcoI YGGCCR 1 cut(s) 277
AcsI RAATTY 2 cut(s) 391, 423
AcuI CTGAAG 1 cut(s) 186
AfaI GTAC 1 cut(s) 259
AfiI CCNNNNNNNGG 2 cut(s) 127, 279
AgsI TTSAA 2 cut(s) 356, 397
AjnI CCWGG 1 cut(s) 242
AluBI AGCT 5 cut(s) 34, 51, 164, 304, 359
AluI AGCT 5 cut(s) 34, 51, 164, 304, 359
Alw21I GWGCWC 1 cut(s) 306
AlwI GGATC 1 cut(s) 27
AoxI GGCC 1 cut(s) 277
ApeKI GCWGC 2 cut(s) 5, 439
ApoI RAATTY 2 cut(s) 391, 423
AsuC2I CCSGG 1 cut(s) 281
AsuHPI GGTGA 1 cut(s) 136
BanI GGYRCC 1 cut(s) 339
BanII GRGCYC 2 cut(s) 207, 306
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 1 cut(s) 426
BccI CCATC 2 cut(s) 155, 406
BciT130I CCWGG 1 cut(s) 244
BcnI CCSGG 1 cut(s) 281
BisI GCNGC 2 cut(s) 6, 440
BlsI GCNGC 2 cut(s) 7, 441
Bme1390I CCNGG 2 cut(s) 244, 281
BmiI GGNNCC 1 cut(s) 341
BmrFI CCNGG 2 cut(s) 244, 281
BmsI GCATC 1 cut(s) 301
BplI GAGNNNNNCTC 2 cut(s) 168, 200
BpuEI CTTGAG 1 cut(s) 56
BpuMI CCSGG 1 cut(s) 281
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 279
BseBI CCWGG 1 cut(s) 244
BseGI GGATG 1 cut(s) 417
BseLI CCNNNNNNNGG 2 cut(s) 127, 279
BseMII CTCAG 2 cut(s) 188, 213
BseXI GCAGC 1 cut(s) 426
BshFI GGCC 1 cut(s) 279
BshNI GGYRCC 1 cut(s) 339
BsiHKAI GWGCWC 1 cut(s) 306
BsiSI CCGG 1 cut(s) 280
BslI CCNNNNNNNGG 2 cut(s) 127, 279
BsnI GGCC 1 cut(s) 279
Bsp1286I GDGCHC 2 cut(s) 207, 306
Bsp143I GATC 1 cut(s) 19
BspANI GGCC 1 cut(s) 279
BspCNI CTCAG 2 cut(s) 189, 214
BspLI GGNNCC 1 cut(s) 341
BspPI GGATC 1 cut(s) 27
BspT107I GGYRCC 1 cut(s) 339
BssMI GATC 1 cut(s) 19
Bst2UI CCWGG 1 cut(s) 244
Bst4CI ACNGT 1 cut(s) 368
BstDEI CTNAG 4 cut(s) 23, 95, 197, 222
BstF5I GGATG 1 cut(s) 417
BstKTI GATC 1 cut(s) 22
BstMBI GATC 1 cut(s) 19
BstMWI GCNNNNNNNGC 2 cut(s) 320, 356
BstNI CCWGG 1 cut(s) 244
BstSCI CCNGG 2 cut(s) 242, 279
BstV1I GCAGC 1 cut(s) 426
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BsuRI GGCC 1 cut(s) 279
BtsCI GGATG 1 cut(s) 417
CsiI ACCWGGT 1 cut(s) 242
Csp6I GTAC 1 cut(s) 258
CviAII CATG 2 cut(s) 433, 453
CviQI GTAC 1 cut(s) 258
DdeI CTNAG 4 cut(s) 23, 95, 197, 222
DpnI GATC 1 cut(s) 21
DpnII GATC 1 cut(s) 19
DraI TTTAAA 1 cut(s) 250
EaeI YGGCCR 1 cut(s) 277
Ecl136II GAGCTC 1 cut(s) 304
Eco24I GRGCYC 2 cut(s) 207, 306
Eco53kI GAGCTC 1 cut(s) 304
Eco57I CTGAAG 1 cut(s) 186
EcoICRI GAGCTC 1 cut(s) 304
EcoRII CCWGG 1 cut(s) 242
EcoT38I GRGCYC 2 cut(s) 207, 306
FaeI CATG 2 cut(s) 436, 456
FaiI YATR 4 cut(s) 231, 429, 434, 454
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FatI CATG 2 cut(s) 432, 452
Fnu4HI GCNGC 2 cut(s) 6, 440
FokI GGATG 1 cut(s) 424
FriOI GRGCYC 2 cut(s) 207, 306
Fsp4HI GCNGC 2 cut(s) 6, 440
GluI GCNGC 2 cut(s) 6, 440
HaeIII GGCC 1 cut(s) 279
HapII CCGG 1 cut(s) 280
Hin1II CATG 2 cut(s) 436, 456
HincII GTYRAC 3 cut(s) 133, 214, 364
HindII GTYRAC 3 cut(s) 133, 214, 364
HinfI GANTC 1 cut(s) 397
HpaII CCGG 1 cut(s) 280
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 3 cut(s) 133, 214, 364
Hpy188I TCNGA 2 cut(s) 198, 223
Hpy188III TCNNGA 2 cut(s) 299, 353
Hpy8I GTNNAC 3 cut(s) 133, 214, 364
HpyAV CCTTC 3 cut(s) 10, 164, 329
HpyCH4III ACNGT 1 cut(s) 368
HpyCH4IV ACGT 1 cut(s) 418
HpyCH4V TGCA 3 cut(s) 58, 229, 314
HpyF10VI GCNNNNNNNGC 2 cut(s) 320, 356
HpyF3I CTNAG 4 cut(s) 23, 95, 197, 222
HpySE526I ACGT 1 cut(s) 418
Hsp92II CATG 2 cut(s) 436, 456
Kzo9I GATC 1 cut(s) 19
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 5 cut(s) 229, 256, 286, 293, 307
Lsp1109I GCAGC 1 cut(s) 426
LweI GCATC 1 cut(s) 301
MabI ACCWGGT 1 cut(s) 242
MaeII ACGT 1 cut(s) 418
MaeIII GTNAC 1 cut(s) 102
MalI GATC 1 cut(s) 21
MboI GATC 1 cut(s) 19
MboII GAAGA 2 cut(s) 142, 179
MflI RGATCY 1 cut(s) 19
MhlI GDGCHC 2 cut(s) 207, 306
MluCI AATT 3 cut(s) 138, 391, 423
MnlI CCTC 5 cut(s) 31, 92, 132, 217, 429
MseI TTAA 1 cut(s) 249
MspI CCGG 1 cut(s) 280
MspR9I CCNGG 2 cut(s) 244, 281
MvaI CCWGG 1 cut(s) 244
MwoI GCNNNNNNNGC 2 cut(s) 320, 356
NciI CCSGG 1 cut(s) 281
NdeII GATC 1 cut(s) 19
NlaIII CATG 2 cut(s) 436, 456
NlaIV GGNNCC 1 cut(s) 341
PfeI GAWTC 1 cut(s) 397
PkrI GCNGC 2 cut(s) 7, 441
PsiI TTATAA 1 cut(s) 429
Psp124BI GAGCTC 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 242
PspGI CCWGG 1 cut(s) 242
PspN4I GGNNCC 1 cut(s) 341
PsuI RGATCY 1 cut(s) 19
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
SacI GAGCTC 1 cut(s) 306
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 2 cut(s) 6, 440
Sau3AI GATC 1 cut(s) 19
ScrFI CCNGG 2 cut(s) 244, 281
SduI GDGCHC 2 cut(s) 207, 306
SetI ASST 8 cut(s) 36, 53, 166, 228, 245, 306, 361, 421
SexAI ACCWGGT 1 cut(s) 242
SfaNI GCATC 1 cut(s) 301
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
Sse9I AATT 3 cut(s) 138, 391, 423
SstI GAGCTC 1 cut(s) 306
StyD4I CCNGG 2 cut(s) 242, 279
TaaI ACNGT 1 cut(s) 368
TaiI ACGT 1 cut(s) 421
TaqII GACCGA 1 cut(s) 92
TasI AATT 3 cut(s) 138, 391, 423
TfiI GAWTC 1 cut(s) 397
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TseI GCWGC 2 cut(s) 5, 439
XapI RAATTY 2 cut(s) 391, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.