RLG00000035439

protein histidine kinase binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0010548
Physical Location & Seq
Reverse (-)
66970103 .. 66971185
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035439

Sequence Viewer

Length: 438 bp
ATGGCCGGAAAGGATCTCAACCAGAAGCTCAATGAACTCATCAGCTCCTTGCAAGACCAGGGCATTCTGGATGACTACTTTGATGAACTGAAAGGGTTACAAGATGAACAAAGTCCACAGTTTGTTACTAACACTATAACTATTTACCTTGGTGGAGCAGATGATACGATAGCAGAACTCACCAAAAATCTGAGTGAGCCTGCAGTGAACCATCCCAGGGTGACTTATCTTGCGGATAAACTGAAGGGAAGTAGCATGAGTATCGGTGGCGCTCGGATGGCAGATGTTTGTGCTGAGCTCTGTGAGGCAAGTGAGGCAAACAAAAGAGAAGCGTGTCTTGCACTCTTTGGAGGAGTCAATCGTGAATATTCTATCTTGCAGGAGAGTCTGAATAAGATTGCTCAGTTGGAGCAAGCTATTCATGATAATAAGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0007165 GO:0007231 GO:0007234 GO:0007346 GO:0008150 GO:0008152 GO:0009628 GO:0009893 GO:0009927 GO:0009966 GO:0009967 GO:0009987 GO:0010389 GO:0010562 GO:0010564 GO:0010604 GO:0010646 GO:0010647 GO:0010948 GO:0010972 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023051 GO:0023052 GO:0023056 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032872 GO:0032874 GO:0033554 GO:0034599 GO:0035556 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043408 GO:0043410 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0045930 GO:0045937 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051716 GO:0051726 GO:0060089 GO:0060255 GO:0065007 GO:0070302 GO:0070304 GO:0070887 GO:0071214 GO:0071470 GO:0071704 GO:0080036 GO:0080038 GO:0080090 GO:0080134 GO:0080135 GO:0104004 GO:0140096 GO:1901564 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902531 GO:1902533 GO:1902749 GO:1902750
KEGG Pathways
Metabolic & Signaling
ko02020 ko04011 ko04075 map02020 map04011 map04075
Pfam Domains
Protein Families
Hpt

Protein Analysis

146

Amino Acids

15.86

Weight (kDa)

4.52

Isoelectric Point (pI)

48.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hpt PF01627 47 - 125 4e-06 Hpt domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 233
AclWI GGATC 1 cut(s) 21
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 263
AfiI CCNNNNNNNGG 1 cut(s) 217
AjnI CCWGG 2 cut(s) 57, 215
AluBI AGCT 4 cut(s) 28, 45, 298, 416
AluI AGCT 4 cut(s) 28, 45, 298, 416
Alw21I GWGCWC 1 cut(s) 300
AlwI GGATC 1 cut(s) 21
AoxI GGCC 1 cut(s) 3
AspLEI GCGC 1 cut(s) 272
AsuHPI GGTGA 2 cut(s) 172, 232
BanII GRGCYC 1 cut(s) 300
Bbv12I GWGCWC 1 cut(s) 300
BccI CCATC 2 cut(s) 219, 271
BcgI CGANNNNNNTGC 2 cut(s) 244, 278
BciT130I CCWGG 2 cut(s) 59, 217
BfmI CTRYAG 1 cut(s) 201
BfoI RGCGCY 1 cut(s) 273
BlpI GCTNAGC 1 cut(s) 294
Bme1390I CCNGG 2 cut(s) 59, 217
BmrFI CCNGG 2 cut(s) 59, 217
Bpu1102I GCTNAGC 1 cut(s) 294
BsaJI CCNNGG 4 cut(s) 58, 148, 215, 216
Bsc4I CCNNNNNNNGG 1 cut(s) 217
BseBI CCWGG 2 cut(s) 59, 217
BseDI CCNNGG 4 cut(s) 58, 148, 215, 216
BseGI GGATG 3 cut(s) 76, 211, 282
BseLI CCNNNNNNNGG 1 cut(s) 217
BseMII CTCAG 3 cut(s) 182, 285, 416
BseRI GAGGAG 1 cut(s) 366
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 300
BsiSI CCGG 1 cut(s) 6
BslI CCNNNNNNNGG 1 cut(s) 217
BsmI GAATGC 1 cut(s) 63
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 300
Bsp143I GATC 1 cut(s) 13
Bsp1720I GCTNAGC 1 cut(s) 294
BspACI CCGC 1 cut(s) 233
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 183, 286, 415
BspHI TCATGA 1 cut(s) 421
BspMAI CTGCAG 1 cut(s) 205
BspPI GGATC 1 cut(s) 21
BssECI CCNNGG 4 cut(s) 58, 148, 215, 216
BssMI GATC 1 cut(s) 13
BssT1I CCWWGG 1 cut(s) 148
Bst2UI CCWGG 2 cut(s) 59, 217
Bst4CI ACNGT 1 cut(s) 120
BstC8I GCNNGC 2 cut(s) 201, 414
BstDEI CTNAG 3 cut(s) 191, 294, 402
BstF5I GGATG 3 cut(s) 76, 211, 282
BstH2I RGCGCY 1 cut(s) 273
BstHHI GCGC 1 cut(s) 272
BstKTI GATC 1 cut(s) 16
BstMBI GATC 1 cut(s) 13
BstMWI GCNNNNNNNGC 3 cut(s) 278, 314, 338
BstNI CCWGG 2 cut(s) 59, 217
BstSCI CCNGG 2 cut(s) 57, 215
BstSFI CTRYAG 1 cut(s) 201
BstX2I RGATCY 1 cut(s) 13
BstYI RGATCY 1 cut(s) 13
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 3 cut(s) 76, 211, 282
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 1 cut(s) 210
Cac8I GCNNGC 2 cut(s) 201, 414
CciI TCATGA 1 cut(s) 421
CfoI GCGC 1 cut(s) 272
CviAII CATG 2 cut(s) 256, 422
CviJI RGCY 6 cut(s) 5, 28, 45, 199, 298, 416
CviKI_1 RGCY 6 cut(s) 5, 28, 45, 199, 298, 416
DdeI CTNAG 3 cut(s) 191, 294, 402
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 298
Eco130I CCWWGG 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 300
Eco53kI GAGCTC 1 cut(s) 298
Eco57I CTGAAG 1 cut(s) 263
EcoICRI GAGCTC 1 cut(s) 298
EcoRII CCWGG 2 cut(s) 57, 215
EcoT14I CCWWGG 1 cut(s) 148
EcoT38I GRGCYC 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 148
FaeI CATG 2 cut(s) 259, 425
FaiI YATR 3 cut(s) 137, 257, 423
FalI AAGNNNNNCTT 2 cut(s) 321, 353
FatI CATG 2 cut(s) 255, 421
FokI GGATG 3 cut(s) 83, 198, 289
FriOI GRGCYC 1 cut(s) 300
GlaI GCGC 1 cut(s) 271
HaeII RGCGCY 1 cut(s) 273
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 6
HhaI GCGC 1 cut(s) 272
Hin1II CATG 2 cut(s) 259, 425
Hin6I GCGC 1 cut(s) 270
HinP1I GCGC 1 cut(s) 270
HinfI GANTC 2 cut(s) 354, 385
HpaII CCGG 1 cut(s) 6
HphI GGTGA 2 cut(s) 172, 232
Hpy166II GTNNAC 2 cut(s) 116, 208
Hpy188I TCNGA 3 cut(s) 192, 276, 390
Hpy188III TCNNGA 3 cut(s) 68, 362, 422
Hpy8I GTNNAC 2 cut(s) 116, 208
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 1 cut(s) 120
HpyCH4V TGCA 4 cut(s) 52, 203, 341, 379
HpyF10VI GCNNNNNNNGC 3 cut(s) 278, 314, 338
HpyF3I CTNAG 3 cut(s) 191, 294, 402
Hsp92II CATG 2 cut(s) 259, 425
HspAI GCGC 1 cut(s) 270
Kzo9I GATC 1 cut(s) 13
LmnI GCTCC 3 cut(s) 50, 155, 409
LpnPI CCDG 9 cut(s) 19, 35, 44, 53, 71, 202, 213, 229, 365
MaeIII GTNAC 3 cut(s) 96, 124, 220
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MflI RGATCY 1 cut(s) 13
MhlI GDGCHC 1 cut(s) 300
MlyI GAGTC 2 cut(s) 363, 394
MmeI TCCRAC 1 cut(s) 387
MnlI CCTC 3 cut(s) 298, 307, 344
MspI CCGG 1 cut(s) 6
MspR9I CCNGG 2 cut(s) 59, 217
Mva1269I GAATGC 1 cut(s) 63
MvaI CCWGG 2 cut(s) 59, 217
MwoI GCNNNNNNNGC 3 cut(s) 278, 314, 338
NdeII GATC 1 cut(s) 13
NlaIII CATG 2 cut(s) 259, 425
NmuCI GTSAC 1 cut(s) 220
PagI TCATGA 1 cut(s) 421
PasI CCCWGGG 1 cut(s) 216
PctI GAATGC 1 cut(s) 63
PleI GAGTC 2 cut(s) 362, 393
PpsI GAGTC 2 cut(s) 362, 393
Psp124BI GAGCTC 1 cut(s) 300
Psp6I CCWGG 2 cut(s) 57, 215
PspGI CCWGG 2 cut(s) 57, 215
PstI CTGCAG 1 cut(s) 205
PsuI RGATCY 1 cut(s) 13
SacI GAGCTC 1 cut(s) 300
Sau3AI GATC 1 cut(s) 13
SchI GAGTC 2 cut(s) 363, 394
ScrFI CCNGG 2 cut(s) 59, 217
SduI GDGCHC 1 cut(s) 300
SetI ASST 5 cut(s) 30, 47, 150, 300, 418
SfcI CTRYAG 1 cut(s) 201
SsiI CCGC 1 cut(s) 233
SspI AATATT 1 cut(s) 368
SstI GAGCTC 1 cut(s) 300
StyD4I CCNGG 2 cut(s) 57, 215
StyI CCWWGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 120
TscAI CASTG 1 cut(s) 210
TseFI GTSAC 1 cut(s) 220
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 4 cut(s) 48, 99, 120, 410
TspRI CASTG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.