Prupe.6G123200_v2.0.a1

protein histidine kinase binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0010548
Physical Location & Seq
Forward (+)
9189204 .. 9191569
2366 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G123200.1

Sequence Viewer

Length: 459 bp
ATGGCTGGGAGGACGGACATTGCCGAACAGCTCAAGGAACTCATCTCCTCCTTGAAAGAACAGGGTATTCTAGATGAGAAGTTTGATGAAGTGATGAGACGGTTGAAAGATGAACGAAACCCTCGCTTTGCTGTTGAAATCATAAACCACTTCTACGGTGATGCTGAAAATAACCTAGCAGAACTTACATACCTGAGTGTTGTTCCTATCATCGACTATCCTCAGCTGACAAATGTCGCCCTCAATCTCAAGGAAGCTTGCTCAAGTTTTGGTTGCAGCCGGATGGCCATTGCCTGCGGCGAGCTCCGAGATGCAAGTGAAGCAAAGAACAAAGAAGGGTGCCATATGGTTCTTGAACATATCCGCCGTGAATATGCTGTCCTGCAGAAGAATCTGAATCAAATTGCTCAGCTGGACCGAGCAATTTATGACAATGCGATTAGAGGACGCTATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0007165 GO:0007231 GO:0007234 GO:0007346 GO:0008150 GO:0008152 GO:0009628 GO:0009893 GO:0009927 GO:0009966 GO:0009967 GO:0009987 GO:0010389 GO:0010562 GO:0010564 GO:0010604 GO:0010646 GO:0010647 GO:0010948 GO:0010972 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023051 GO:0023052 GO:0023056 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032872 GO:0032874 GO:0033554 GO:0034599 GO:0035556 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043408 GO:0043410 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0045930 GO:0045937 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051716 GO:0051726 GO:0060089 GO:0060255 GO:0065007 GO:0070302 GO:0070304 GO:0070887 GO:0071214 GO:0071470 GO:0071704 GO:0080036 GO:0080038 GO:0080090 GO:0080134 GO:0080135 GO:0104004 GO:0140096 GO:1901564 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902531 GO:1902533 GO:1902749 GO:1902750
KEGG Pathways
Metabolic & Signaling
ko02020 ko04011 ko04075 map02020 map04011 map04075
Pfam Domains
Protein Families
Hpt

Protein Analysis

153

Amino Acids

17.41

Weight (kDa)

5.45

Isoelectric Point (pI)

46.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 339
AciI CCGC 2 cut(s) 297, 364
AcoI YGGCCR 1 cut(s) 285
AgsI TTSAA 4 cut(s) 55, 106, 137, 356
AluBI AGCT 5 cut(s) 31, 226, 257, 304, 412
AluI AGCT 5 cut(s) 31, 226, 257, 304, 412
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 1 cut(s) 91
AoxI GGCC 1 cut(s) 285
ApeKI GCWGC 1 cut(s) 276
AspS9I GGNCC 1 cut(s) 415
AsuHPI GGTGA 1 cut(s) 170
AvaII GGWCC 1 cut(s) 415
BalI TGGCCA 1 cut(s) 287
BanI GGYRCC 1 cut(s) 339
BanII GRGCYC 1 cut(s) 306
Bbv12I GWGCWC 1 cut(s) 306
BbvCI CCTCAGC 1 cut(s) 222
BbvI GCAGC 1 cut(s) 288
BccI CCATC 1 cut(s) 277
BceAI ACGGC 1 cut(s) 351
BcoDI GTCTC 1 cut(s) 91
BfaI CTAG 2 cut(s) 71, 176
BfmI CTRYAG 1 cut(s) 383
BisI GCNGC 2 cut(s) 277, 298
BlpI GCTNAGC 1 cut(s) 408
BlsI GCNGC 2 cut(s) 278, 299
Bme18I GGWCC 1 cut(s) 415
BmgT120I GGNCC 1 cut(s) 415
BmiI GGNNCC 1 cut(s) 341
BmsI GCATC 2 cut(s) 151, 301
BoxI GACNNNNGTC 1 cut(s) 233
Bpu10I CCTNAGC 1 cut(s) 222
Bpu1102I GCTNAGC 1 cut(s) 408
BpuEI CTTGAG 3 cut(s) 17, 233, 247
Bse3DI GCAATG 2 cut(s) 18, 288
BseGI GGATG 1 cut(s) 288
BseMI GCAATG 2 cut(s) 18, 288
BseMII CTCAG 3 cut(s) 185, 236, 422
BseRI GAGGAG 1 cut(s) 37
BseXI GCAGC 1 cut(s) 288
BseYI CCCAGC 1 cut(s) 5
BshFI GGCC 1 cut(s) 287
BshNI GGYRCC 1 cut(s) 339
BsiHKAI GWGCWC 1 cut(s) 306
BsiSI CCGG 1 cut(s) 280
BsmAI GTCTC 1 cut(s) 91
BsmBI CGTCTC 1 cut(s) 91
BsnI GGCC 1 cut(s) 287
Bsp1286I GDGCHC 1 cut(s) 306
Bsp1720I GCTNAGC 1 cut(s) 408
BspACI CCGC 2 cut(s) 297, 364
BspANI GGCC 1 cut(s) 287
BspCNI CTCAG 3 cut(s) 186, 235, 421
BspLI GGNNCC 1 cut(s) 341
BspMAI CTGCAG 1 cut(s) 387
BspT107I GGYRCC 1 cut(s) 339
BsrDI GCAATG 2 cut(s) 18, 288
Bst4CI ACNGT 2 cut(s) 102, 158
BstC8I GCNNGC 3 cut(s) 259, 295, 302
BstDEI CTNAG 3 cut(s) 194, 222, 408
BstF5I GGATG 1 cut(s) 288
BstMAI GTCTC 1 cut(s) 91
BstMWI GCNNNNNNNGC 1 cut(s) 320
BstPAI GACNNNNGTC 1 cut(s) 233
BstSFI CTRYAG 1 cut(s) 383
BstV1I GCAGC 1 cut(s) 288
BsuRI GGCC 1 cut(s) 287
BtsCI GGATG 1 cut(s) 288
Cac8I GCNNGC 3 cut(s) 259, 295, 302
Cfr13I GGNCC 1 cut(s) 415
CviJI RGCY 8 cut(s) 5, 31, 226, 257, 279, 287, 304, 412
CviKI_1 RGCY 8 cut(s) 5, 31, 226, 257, 279, 287, 304, 412
DdeI CTNAG 3 cut(s) 194, 222, 408
EaeI YGGCCR 1 cut(s) 285
EciI GGCGGA 1 cut(s) 353
Ecl136II GAGCTC 1 cut(s) 304
Eco24I GRGCYC 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 415
Eco53kI GAGCTC 1 cut(s) 304
EcoICRI GAGCTC 1 cut(s) 304
EcoT38I GRGCYC 1 cut(s) 306
Esp3I CGTCTC 1 cut(s) 91
FaiI YATR 7 cut(s) 143, 190, 345, 347, 360, 375, 429
FauNDI CATATG 1 cut(s) 345
Fnu4HI GCNGC 2 cut(s) 277, 298
FokI GGATG 1 cut(s) 295
FriOI GRGCYC 1 cut(s) 306
Fsp4HI GCNGC 2 cut(s) 277, 298
FspBI CTAG 2 cut(s) 71, 176
GluI GCNGC 2 cut(s) 277, 298
GsaI CCCAGC 1 cut(s) 9
HaeIII GGCC 1 cut(s) 287
HapII CCGG 1 cut(s) 280
HindIII AAGCTT 1 cut(s) 255
HinfI GANTC 2 cut(s) 391, 397
HpaII CCGG 1 cut(s) 280
HphI GGTGA 1 cut(s) 170
Hpy188I TCNGA 2 cut(s) 308, 396
Hpy188III TCNNGA 2 cut(s) 71, 353
HpyAV CCTTC 1 cut(s) 329
HpyCH4III ACNGT 2 cut(s) 102, 158
HpyCH4V TGCA 3 cut(s) 276, 314, 385
HpyF10VI GCNNNNNNNGC 1 cut(s) 320
HpyF3I CTNAG 3 cut(s) 194, 222, 408
LmnI GCTCC 1 cut(s) 309
LpnPI CCDG 6 cut(s) 47, 206, 293, 307, 395, 398
Lsp1109I GCAGC 1 cut(s) 288
LweI GCATC 2 cut(s) 151, 301
MaeI CTAG 2 cut(s) 71, 176
MboII GAAGA 1 cut(s) 400
MhlI GDGCHC 1 cut(s) 306
MlsI TGGCCA 1 cut(s) 287
MluCI AATT 2 cut(s) 402, 423
MluNI TGGCCA 1 cut(s) 287
MnlI CCTC 6 cut(s) 3, 58, 132, 231, 251, 437
Mox20I TGGCCA 1 cut(s) 287
MscI TGGCCA 1 cut(s) 287
MseI TTAA 1 cut(s) 457
Msp20I TGGCCA 1 cut(s) 287
MspA1I CMGCKG 2 cut(s) 226, 412
MspI CCGG 1 cut(s) 280
MwoI GCNNNNNNNGC 1 cut(s) 320
NdeI CATATG 1 cut(s) 345
NlaIV GGNNCC 1 cut(s) 341
PfeI GAWTC 2 cut(s) 391, 397
PkrI GCNGC 2 cut(s) 278, 299
PshAI GACNNNNGTC 1 cut(s) 233
Psp124BI GAGCTC 1 cut(s) 306
PspFI CCCAGC 1 cut(s) 5
PspN4I GGNNCC 1 cut(s) 341
PspPI GGNCC 1 cut(s) 415
PstI CTGCAG 1 cut(s) 387
PvuII CAGCTG 2 cut(s) 226, 412
SacI GAGCTC 1 cut(s) 306
SaqAI TTAA 1 cut(s) 457
SatI GCNGC 2 cut(s) 277, 298
Sau96I GGNCC 1 cut(s) 415
SduI GDGCHC 1 cut(s) 306
SetI ASST 7 cut(s) 33, 177, 195, 228, 259, 306, 414
SfaNI GCATC 2 cut(s) 151, 301
SfcI CTRYAG 1 cut(s) 383
SinI GGWCC 1 cut(s) 415
SmlI CTYRAG 3 cut(s) 32, 248, 262
SmoI CTYRAG 3 cut(s) 32, 248, 262
Sse9I AATT 2 cut(s) 402, 423
SsiI CCGC 2 cut(s) 297, 364
SspMI CTAG 2 cut(s) 71, 176
SstI GAGCTC 1 cut(s) 306
TaaI ACNGT 2 cut(s) 102, 158
TaqI TCGA 1 cut(s) 213
TaqII GACCGA 1 cut(s) 432
TasI AATT 2 cut(s) 402, 423
TauI GCSGC 1 cut(s) 300
TfiI GAWTC 2 cut(s) 391, 397
Tru1I TTAA 1 cut(s) 457
Tru9I TTAA 1 cut(s) 457
TseI GCWGC 1 cut(s) 276
TspDTI ATGAA 2 cut(s) 102, 126
TspGWI ACGGA 1 cut(s) 29
VpaK11BI GGWCC 1 cut(s) 415
XbaI TCTAGA 1 cut(s) 70
XspI CTAG 2 cut(s) 71, 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.