Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0010548

Physical Location & Seq

Genomic Coordinates Reverse (-)

12291240 .. 12294141

Gene Structure 2902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g13100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCTGGGACTACTCCGCTCACCGAACAACTCAACAACTTCGTCCGCTCCTTGCGAGAGCAGGGAATATTGGACTATCACTTTGATGAAATGAAAGAGTTAGAAAGCCAAACTCCTTGCTTAGTTATAGAAGCGTTAACCATGTTCCTTCGTGATGCTGATGCAGCCATAGCAGATCTCTTCAGACTTCTGGGCGCACCTCTTATCAACTACCCTAAGGTGACAGAAATTGCCTACCAGCTCAAAGGAAGTAGTGCAAGTATTGGTGGTTGCCAGATGGCTGACGCCTGTTGTGTGCTTCGAAATGCCAGTGTAGCATTCAATAAAGACGGGTGCTTCACAGGCTTTGACATGGTCAGGCGTGAGTATCTTCAACTGCAAGAGAGTCTGAATCACATTCTTCAGATGGAACATGCAATTAAGGCTATTGAGCCCAGAAGGCGCAGTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

151

Amino Acids

16.86

Weight (kDa)

5.61

Isoelectric Point (pI)

65.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010548)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33681
malus_domestica	MD11G1160500.v1.1
prunus_persica	Prupe.6G123100_v2.0.a1 Prupe.6G123100_v2.0.a1 Prupe.6G123200_v2.0.a1 Prupe.6G123300_v2.0.a1 Prupe.6G123400_v2.0.a1 Prupe.6G123600_v2.0.a1 Prupe.6G123700_v2.0.a1
pyrus_communis	pycom11g13100
rosa_chinensis	RchiOBHm_Chr5g0061201
rosa_laevigata	RLG00000035439 RLG00000035440
rosa_multiflora	Rmu_sc0001366.1_g000018
rosa_roxburghii	Rroxscaffold_1G00019510
rosa_rugosa	Rorug05G0338600
rosa_samantha	Rh5AG399400 Rh5BG412600 Rh5CG437300 Rh5DG426900
rosa_wichuraiana	Rw5G037680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	19, 48
AciI	CCGC	2 cut(s)	17, 46
AcuI	CTGAAG	2 cut(s)	166, 386
AcyI	GRCGYC	1 cut(s)	285
AgsI	TTSAA	2 cut(s)	322, 374
AluBI	AGCT	1 cut(s)	241
AluI	AGCT	1 cut(s)	241
ApeKI	GCWGC	1 cut(s)	164
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
AspLEI	GCGC	2 cut(s)	197, 444
AsuHPI	GGTGA	2 cut(s)	13, 232
AsuII	TTCGAA	1 cut(s)	301
AxyI	CCTNAGG	1 cut(s)	216
BanII	GRGCYC	1 cut(s)	435
BbvI	GCAGC	1 cut(s)	176
BccI	CCATC	2 cut(s)	271, 400
BglI	GCCNNNNNGGC	1 cut(s)	439
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
BmsI	GCATC	2 cut(s)	145, 151
Bpu14I	TTCGAA	1 cut(s)	301
BsaHI	GRCGYC	1 cut(s)	285
Bse1I	ACTGG	1 cut(s)	309
Bse21I	CCTNAGG	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	309
BseXI	GCAGC	1 cut(s)	176
BseYI	CCCAGC	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	22
BsmI	GAATGC	1 cut(s)	317
Bsp119I	TTCGAA	1 cut(s)	301
Bsp1286I	GDGCHC	1 cut(s)	435
Bsp143I	GATC	1 cut(s)	175
BspACI	CCGC	2 cut(s)	17, 46
BspT104I	TTCGAA	1 cut(s)	301
BsrBI	CCGCTC	2 cut(s)	19, 48
BsrI	ACTGG	1 cut(s)	309
BssMI	GATC	1 cut(s)	175
BssNI	GRCGYC	1 cut(s)	285
Bst6I	CTCTTC	1 cut(s)	185
BstACI	GRCGYC	1 cut(s)	285
BstBI	TTCGAA	1 cut(s)	301
BstDEI	CTNAG	2 cut(s)	121, 216
BstHHI	GCGC	2 cut(s)	197, 444
BstKTI	GATC	1 cut(s)	178
BstMBI	GATC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	6 cut(s)	164, 170, 314, 342, 422, 439
BstNSI	RCATGY	1 cut(s)	416
BstV1I	GCAGC	1 cut(s)	176
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
Bsu36I	CCTNAGG	1 cut(s)	216
BtsIMutI	CAGTG	1 cut(s)	316
CfoI	GCGC	2 cut(s)	197, 444
CseI	GACGC	1 cut(s)	293
CviAII	CATG	3 cut(s)	142, 352, 413
CviJI	RGCY	8 cut(s)	5, 108, 167, 241, 281, 345, 425, 433
CviKI_1	RGCY	8 cut(s)	5, 108, 167, 241, 281, 345, 425, 433
DdeI	CTNAG	2 cut(s)	121, 216
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Eco24I	GRGCYC	1 cut(s)	435
Eco57I	CTGAAG	2 cut(s)	166, 386
Eco81I	CCTNAGG	1 cut(s)	216
EcoT38I	GRGCYC	1 cut(s)	435
FaeI	CATG	3 cut(s)	145, 355, 416
FaiI	YATR	5 cut(s)	128, 143, 170, 353, 414
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	3 cut(s)	141, 351, 412
Fnu4HI	GCNGC	1 cut(s)	165
FriOI	GRGCYC	1 cut(s)	435
Fsp4HI	GCNGC	1 cut(s)	165
GlaI	GCGC	2 cut(s)	196, 443
GluI	GCNGC	1 cut(s)	165
GsaI	CCCAGC	1 cut(s)	9
HgaI	GACGC	1 cut(s)	293
HhaI	GCGC	2 cut(s)	197, 444
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	3 cut(s)	145, 355, 416
Hin6I	GCGC	2 cut(s)	195, 442
HinP1I	GCGC	2 cut(s)	195, 442
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HinfI	GANTC	2 cut(s)	385, 391
HpaI	GTTAAC	1 cut(s)	138
HphI	GGTGA	2 cut(s)	13, 232
Hpy166II	GTNNAC	1 cut(s)	138
Hpy188I	TCNGA	3 cut(s)	185, 390, 405
Hpy188III	TCNNGA	1 cut(s)	152
Hpy8I	GTNNAC	1 cut(s)	138
HpyAV	CCTTC	2 cut(s)	158, 432
HpyCH4V	TGCA	4 cut(s)	164, 257, 379, 416
HpyF10VI	GCNNNNNNNGC	6 cut(s)	164, 170, 314, 342, 422, 439
HpyF3I	CTNAG	2 cut(s)	121, 216
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	3 cut(s)	145, 355, 416
HspAI	GCGC	2 cut(s)	195, 442
KspAI	GTTAAC	1 cut(s)	138
Kzo9I	GATC	1 cut(s)	175
LmnI	GCTCC	1 cut(s)	53
LpnPI	CCDG	9 cut(s)	47, 176, 251, 287, 301, 322, 327, 343, 448
Lsp1109I	GCAGC	1 cut(s)	176
LweI	GCATC	2 cut(s)	145, 151
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	1 cut(s)	177
MbiI	CCGCTC	2 cut(s)	19, 48
MboI	GATC	1 cut(s)	175
MboII	GAAGA	3 cut(s)	172, 362, 392
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	435
MluCI	AATT	2 cut(s)	228, 417
MlyI	GAGTC	1 cut(s)	394
MnlI	CCTC	1 cut(s)	210
MseI	TTAA	2 cut(s)	137, 420
MslI	CAYNNNNRTG	1 cut(s)	84
Mva1269I	GAATGC	1 cut(s)	317
MwoI	GCNNNNNNNGC	6 cut(s)	164, 170, 314, 342, 422, 439
NdeII	GATC	1 cut(s)	175
NlaIII	CATG	3 cut(s)	145, 355, 416
NmuCI	GTSAC	1 cut(s)	220
NspI	RCATGY	1 cut(s)	416
NspV	TTCGAA	1 cut(s)	301
PctI	GAATGC	1 cut(s)	317
PfeI	GAWTC	1 cut(s)	391
PflFI	GACNNNGTC	1 cut(s)	353
PkrI	GCNGC	1 cut(s)	166
PleI	GAGTC	1 cut(s)	393
PpsI	GAGTC	1 cut(s)	393
PspFI	CCCAGC	1 cut(s)	5
PsuI	RGATCY	1 cut(s)	175
PsyI	GACNNNGTC	1 cut(s)	353
RseI	CAYNNNNRTG	1 cut(s)	84
SaqAI	TTAA	2 cut(s)	137, 420
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	1 cut(s)	175
SchI	GAGTC	1 cut(s)	394
SduI	GDGCHC	1 cut(s)	435
SetI	ASST	3 cut(s)	202, 222, 243
SfaNI	GCATC	2 cut(s)	145, 151
SfuI	TTCGAA	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	84
Sse9I	AATT	2 cut(s)	228, 417
SsiI	CCGC	2 cut(s)	17, 46
SspI	AATATT	1 cut(s)	69
TaqI	TCGA	1 cut(s)	301
TasI	AATT	2 cut(s)	228, 417
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	2 cut(s)	137, 420
Tru9I	TTAA	2 cut(s)	137, 420
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	1 cut(s)	164
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	2 cut(s)	102, 107
TspRI	CASTG	1 cut(s)	316
Tth111I	GACNNNGTC	1 cut(s)	353
XceI	RCATGY	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.