Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010548

Physical Location & Seq

Genomic Coordinates Forward (+)

9183662 .. 9187792

Gene Structure 4131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G123100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGCCTGGAGCGACTCTGCTCACCCAACAACTCAACAACTTCATCCGCTCCTTGCGAGAGCAGGGAATACTGGACTTCCACTTTGAAGAACTGAAAGAGTTAGAAAGCGACACTCCTTGCTTAGTTGTGGAAGCAATAACCATGTTCCTTCGCGACGCTGACTGTTCTATAGCAGAACTTCTAAGAACTCTGGGTGCACCTCTTATCAACTACACTAGGGTGACAGAAATTGCCTTCCAGCTCAAAGGAAGTAGCTCAAGTGTTGGTGGTTGCCGGATGGCCCATGCCTGTTGTGAGCTTCGAGATGCAAGTGAAGCATATTCCAAAGAAAGGTCCCTTTCAGGCTTTGACAGGGTCAGACGCGAGTATCTTGTCTTGCGGGAGAATCTGAATCAAATTCTTCAGATGGAACAAGCAATTAACGCGTTTGAGCCCAGAAGGCGCCATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

151

Amino Acids

17.12

Weight (kDa)

5.66

Isoelectric Point (pI)

54.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010548)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33681
malus_domestica	MD11G1160500.v1.1
prunus_persica	Prupe.6G123100_v2.0.a1 Prupe.6G123100_v2.0.a1 Prupe.6G123200_v2.0.a1 Prupe.6G123300_v2.0.a1 Prupe.6G123400_v2.0.a1 Prupe.6G123600_v2.0.a1 Prupe.6G123700_v2.0.a1
pyrus_communis	pycom11g13100
rosa_chinensis	RchiOBHm_Chr5g0061201
rosa_laevigata	RLG00000035439 RLG00000035440
rosa_multiflora	Rmu_sc0001366.1_g000018
rosa_roxburghii	Rroxscaffold_1G00019510
rosa_rugosa	Rorug05G0338600
rosa_samantha	Rh5AG399400 Rh5BG412600 Rh5CG437300 Rh5DG426900
rosa_wichuraiana	Rw5G037680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	441
AccBSI	CCGCTC	1 cut(s)	48
AccII	CGCG	3 cut(s)	153, 363, 425
AciI	CCGC	2 cut(s)	46, 379
AcsI	RAATTY	1 cut(s)	396
AcuI	CTGAAG	1 cut(s)	386
AcyI	GRCGYC	1 cut(s)	442
AfiI	CCNNNNNNNGG	1 cut(s)	330
AflIII	ACRYGT	1 cut(s)	423
AgsI	TTSAA	1 cut(s)	86
AjnI	CCWGG	1 cut(s)	4
AleI	CACNNNNGTG	1 cut(s)	218
AluBI	AGCT	3 cut(s)	241, 255, 298
AluI	AGCT	3 cut(s)	241, 255, 298
Alw21I	GWGCWC	1 cut(s)	199
Alw44I	GTGCAC	1 cut(s)	195
AoxI	GGCC	1 cut(s)	279
ApaLI	GTGCAC	1 cut(s)	195
ApoI	RAATTY	1 cut(s)	396
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
AspLEI	GCGC	1 cut(s)	444
AspS9I	GGNCC	2 cut(s)	280, 333
AsuHPI	GGTGA	2 cut(s)	13, 232
AvaII	GGWCC	1 cut(s)	333
BaeGI	GKGCMC	1 cut(s)	199
BaeI	ACNNNNGTAYC	2 cut(s)	350, 383
BanI	GGYRCC	1 cut(s)	441
BanII	GRGCYC	1 cut(s)	435
Bbv12I	GWGCWC	1 cut(s)	199
BccI	CCATC	2 cut(s)	271, 400
BciT130I	CCWGG	1 cut(s)	6
BfaI	CTAG	1 cut(s)	216
BfmI	CTRYAG	1 cut(s)	168
BfoI	RGCGCY	1 cut(s)	445
BglI	GCCNNNNNGGC	1 cut(s)	439
Bme1390I	CCNGG	1 cut(s)	6
Bme18I	GGWCC	1 cut(s)	333
BmgT120I	GGNCC	2 cut(s)	280, 333
BmiI	GGNNCC	2 cut(s)	335, 443
BmrFI	CCNGG	1 cut(s)	6
BmsI	GCATC	1 cut(s)	295
BpmI	CTGGAG	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	241
BsaHI	GRCGYC	1 cut(s)	442
Bsc4I	CCNNNNNNNGG	1 cut(s)	330
Bse1I	ACTGG	1 cut(s)	75
BseBI	CCWGG	1 cut(s)	6
BseGI	GGATG	2 cut(s)	42, 282
BseLI	CCNNNNNNNGG	1 cut(s)	330
BseNI	ACTGG	1 cut(s)	75
BseSI	GKGCMC	1 cut(s)	199
Bsh1236I	CGCG	3 cut(s)	153, 363, 425
BshFI	GGCC	1 cut(s)	281
BshNI	GGYRCC	1 cut(s)	441
BsiHKAI	GWGCWC	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	274
BslFI	GGGAC	1 cut(s)	319
BslI	CCNNNNNNNGG	1 cut(s)	330
BsmFI	GGGAC	1 cut(s)	319
BsnI	GGCC	1 cut(s)	281
Bsp1286I	GDGCHC	2 cut(s)	199, 435
Bsp68I	TCGCGA	1 cut(s)	153
BspACI	CCGC	2 cut(s)	46, 379
BspANI	GGCC	1 cut(s)	281
BspFNI	CGCG	3 cut(s)	153, 363, 425
BspLI	GGNNCC	2 cut(s)	335, 443
BspT107I	GGYRCC	1 cut(s)	441
BsrBI	CCGCTC	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	75
BssNI	GRCGYC	1 cut(s)	442
Bst2UI	CCWGG	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	164
BstACI	GRCGYC	1 cut(s)	442
BstDEI	CTNAG	2 cut(s)	121, 182
BstF5I	GGATG	2 cut(s)	42, 282
BstFNI	CGCG	3 cut(s)	153, 363, 425
BstH2I	RGCGCY	1 cut(s)	445
BstHHI	GCGC	1 cut(s)	444
BstMWI	GCNNNNNNNGC	3 cut(s)	314, 422, 439
BstNI	CCWGG	1 cut(s)	6
BstSCI	CCNGG	1 cut(s)	4
BstSFI	CTRYAG	1 cut(s)	168
BstSLI	GKGCMC	1 cut(s)	199
BstUI	CGCG	3 cut(s)	153, 363, 425
BsuRI	GGCC	1 cut(s)	281
BtsCI	GGATG	2 cut(s)	42, 282
BtuMI	TCGCGA	1 cut(s)	153
CfoI	GCGC	1 cut(s)	444
Cfr13I	GGNCC	2 cut(s)	280, 333
CseI	GACGC	2 cut(s)	164, 369
CviAII	CATG	2 cut(s)	142, 284
CviJI	RGCY	6 cut(s)	241, 255, 281, 298, 345, 433
CviKI_1	RGCY	6 cut(s)	241, 255, 281, 298, 345, 433
DdeI	CTNAG	2 cut(s)	121, 182
DinI	GGCGCC	1 cut(s)	443
Eco24I	GRGCYC	1 cut(s)	435
Eco47I	GGWCC	1 cut(s)	333
Eco57I	CTGAAG	1 cut(s)	386
EcoO109I	RGGNCCY	1 cut(s)	333
EcoRII	CCWGG	1 cut(s)	4
EcoT38I	GRGCYC	1 cut(s)	435
EgeI	GGCGCC	1 cut(s)	443
EheI	GGCGCC	1 cut(s)	443
FaeI	CATG	2 cut(s)	145, 287
FaiI	YATR	4 cut(s)	143, 170, 285, 319
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	2 cut(s)	141, 283
FauI	CCCGC	1 cut(s)	372
FokI	GGATG	2 cut(s)	29, 289
FriOI	GRGCYC	1 cut(s)	435
FspBI	CTAG	1 cut(s)	216
GlaI	GCGC	1 cut(s)	443
GsuI	CTGGAG	1 cut(s)	27
HaeII	RGCGCY	1 cut(s)	445
HaeIII	GGCC	1 cut(s)	281
HapII	CCGG	1 cut(s)	274
HgaI	GACGC	2 cut(s)	164, 369
HhaI	GCGC	1 cut(s)	444
Hin1I	GRCGYC	1 cut(s)	442
Hin1II	CATG	2 cut(s)	145, 287
Hin6I	GCGC	1 cut(s)	442
HinP1I	GCGC	1 cut(s)	442
HinfI	GANTC	3 cut(s)	13, 385, 391
HpaII	CCGG	1 cut(s)	274
HphI	GGTGA	2 cut(s)	13, 232
Hpy166II	GTNNAC	1 cut(s)	197
Hpy188I	TCNGA	3 cut(s)	359, 390, 405
Hpy188III	TCNNGA	2 cut(s)	152, 302
Hpy8I	GTNNAC	1 cut(s)	197
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	3 cut(s)	158, 244, 432
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4V	TGCA	2 cut(s)	197, 308
HpyF10VI	GCNNNNNNNGC	3 cut(s)	314, 422, 439
HpyF3I	CTNAG	2 cut(s)	121, 182
Hsp92I	GRCGYC	1 cut(s)	442
Hsp92II	CATG	2 cut(s)	145, 287
HspAI	GCGC	1 cut(s)	442
KasI	GGCGCC	1 cut(s)	441
LmnI	GCTCC	2 cut(s)	8, 53
LweI	GCATC	1 cut(s)	295
MaeI	CTAG	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	220
MbiI	CCGCTC	1 cut(s)	48
MboII	GAAGA	2 cut(s)	98, 392
MhlI	GDGCHC	2 cut(s)	199, 435
MluCI	AATT	3 cut(s)	228, 396, 417
MluI	ACGCGT	1 cut(s)	423
Mly113I	GGCGCC	1 cut(s)	442
MlyI	GAGTC	1 cut(s)	7
MnlI	CCTC	1 cut(s)	210
MseI	TTAA	1 cut(s)	420
MslI	CAYNNNNRTG	1 cut(s)	218
MspI	CCGG	1 cut(s)	274
MspR9I	CCNGG	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	6
MvnI	CGCG	3 cut(s)	153, 363, 425
MwoI	GCNNNNNNNGC	3 cut(s)	314, 422, 439
NarI	GGCGCC	1 cut(s)	442
NlaIII	CATG	2 cut(s)	145, 287
NlaIV	GGNNCC	2 cut(s)	335, 443
NmuCI	GTSAC	1 cut(s)	220
NruI	TCGCGA	1 cut(s)	153
OliI	CACNNNNGTG	1 cut(s)	218
PfeI	GAWTC	2 cut(s)	385, 391
PflFI	GACNNNGTC	1 cut(s)	353
PleI	GAGTC	1 cut(s)	7
PluTI	GGCGCC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	7
PpuMI	RGGWCCY	1 cut(s)	333
Psp5II	RGGWCCY	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	4
PspN4I	GGNNCC	2 cut(s)	335, 443
PspPI	GGNCC	2 cut(s)	280, 333
PspPPI	RGGWCCY	1 cut(s)	333
PsyI	GACNNNGTC	1 cut(s)	353
RruI	TCGCGA	1 cut(s)	153
RseI	CAYNNNNRTG	1 cut(s)	218
SaqAI	TTAA	1 cut(s)	420
Sau96I	GGNCC	2 cut(s)	280, 333
SchI	GAGTC	1 cut(s)	7
ScrFI	CCNGG	1 cut(s)	6
SduI	GDGCHC	2 cut(s)	199, 435
SetI	ASST	5 cut(s)	202, 243, 257, 300, 335
SfaNI	GCATC	1 cut(s)	295
SfcI	CTRYAG	1 cut(s)	168
SfoI	GGCGCC	1 cut(s)	443
SinI	GGWCC	1 cut(s)	333
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
Sse9I	AATT	3 cut(s)	228, 396, 417
SsiI	CCGC	2 cut(s)	46, 379
SspDI	GGCGCC	1 cut(s)	441
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	4
TaaI	ACNGT	1 cut(s)	164
TaqI	TCGA	1 cut(s)	301
TasI	AATT	3 cut(s)	228, 396, 417
TfiI	GAWTC	2 cut(s)	385, 391
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TseFI	GTSAC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	1 cut(s)	31
Tth111I	GACNNNGTC	1 cut(s)	353
VneI	GTGCAC	1 cut(s)	195
VpaK11BI	GGWCC	1 cut(s)	333
XapI	RAATTY	1 cut(s)	396
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.