Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0014703

Physical Location & Seq

Genomic Coordinates Forward (+)

29271852 .. 29273178

Gene Structure 1327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g33792.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGAATTATTCGTGCCTGAAGTAATTAAAGGGTTTCATTCGACGGATCGCAGCATATTTAAACGGCTTCTCGACCATGGATTTGACCTTAACAACTCCAAGTTCATCGTAGCATTTTGGTATTTTCTTGATAAAAAAAACCACTTCAGATTTATGGCAGAGAAAATTAAACCTATAGGAGATGCAGACTTCCGAGACTTGGCGCAAGAGACGCTTGCGTGCTTCATTGATTTGATCTTGGATTGTAATGAATCTCAACCTAGCCAGTTCAGAAGGCTGTCTGAGGTTGTTCCCAATTTAGGGTTGGTGTTACGGAACAAAGAAGAAGCCAAGAGACAAATGGAGTGGTTCATGAAGGAGGTCTGTGAAAAAGCCTTTGGTGATATAATTCATCGATATTTGAATGGTCTGCAAGAGTTTCATAGTTGCCCTCCTCCTGTCGTGCCAAGTCTGGCGCCAAAGATTGCTAATACTCAATCTTCTCCAGCCAAGCAAGGAATAACGGATGATGAAGCACGTAGAAGTTTGTTCGTCACCTTCTCCAAAGGCCACCCTGTTTCAAAAGGTGAACTTGAAACCCTAATTCGACAACAATGGGATAGGAACTTCGAAGATCGTGTAGAGAAAATCATCATGGATGAACATTATATGCTTTCGGCTCGTGTTCTTTGTAAGTCTCCTGCAGACGTTAGAAGAATTGTTGGTGACGAGGAGGGCCGCAAAGTCCACTACTCAATCAACGCAAAAGATGTTAGGGTGAGGAAATGGGTGAGACGTACTGGCGCTCTCAAATGGGAAGAGATGCTCCAAAGTAGCCGCTGTTTGATCCATCGATCACAACCACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

283

Amino Acids

32.96

Weight (kDa)

8.83

Isoelectric Point (pI)

59.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014703)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33792
malus_domestica	MD03G1108800.v1.1 MD11G1122600.v1.1
prunus_persica	Prupe.3G138200_v2.0.a1 Prupe.6G092000_v2.0.a1
rosa_laevigata	RLG00000014218 RLG00000035462 RLG00000035472
rosa_multiflora	Rmu_co8089466.1_g000001 Rmu_sc0000338.1_g000001 Rmu_sc0000689.1_g000003
rosa_roxburghii	Rroxscaffold_1G00019350
rosa_rugosa	Rorug05G0339900
rosa_samantha	Rh5AG402100 Rh5BG414300 Rh5CG438900 Rh5DG428900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	454
AciI	CCGC	2 cut(s)	718, 817
AclWI	GGATC	2 cut(s)	54, 820
AcuI	CTGAAG	2 cut(s)	39, 130
AcyI	GRCGYC	1 cut(s)	455
AfaI	GTAC	1 cut(s)	778
AfiI	CCNNNNNNNGG	3 cut(s)	199, 299, 300
AgsI	TTSAA	3 cut(s)	403, 561, 575
AjuI	GAANNNNNNNTTGG	2 cut(s)	360, 392
Alw26I	GTCTC	5 cut(s)	189, 203, 328, 681, 766
AlwI	GGATC	2 cut(s)	54, 820
AoxI	GGCC	2 cut(s)	547, 715
ApeKI	GCWGC	1 cut(s)	51
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
AspLEI	GCGC	3 cut(s)	205, 457, 785
AspS9I	GGNCC	1 cut(s)	715
AsuHPI	GGTGA	6 cut(s)	392, 526, 578, 716, 769, 781
AsuII	TTCGAA	1 cut(s)	609
BanI	GGYRCC	1 cut(s)	454
BauI	CACGAG	1 cut(s)	660
BbvI	GCAGC	1 cut(s)	63
BccI	CCATC	1 cut(s)	837
BceAI	ACGGC	1 cut(s)	80
BcoDI	GTCTC	5 cut(s)	189, 203, 328, 681, 766
BfaI	CTAG	1 cut(s)	261
BfmI	CTRYAG	2 cut(s)	174, 681
BfoI	RGCGCY	2 cut(s)	458, 786
BisI	GCNGC	3 cut(s)	52, 718, 817
BlsI	GCNGC	3 cut(s)	53, 719, 818
BmgT120I	GGNCC	1 cut(s)	715
BmiI	GGNNCC	1 cut(s)	456
BmsI	GCATC	2 cut(s)	172, 792
BpmI	CTGGAG	1 cut(s)	468
Bpu14I	TTCGAA	1 cut(s)	609
Bsa29I	ATCGAT	2 cut(s)	394, 832
BsaAI	YACGTR	1 cut(s)	518
BsaHI	GRCGYC	1 cut(s)	455
BsaJI	CCNNGG	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	3 cut(s)	199, 299, 300
Bse1I	ACTGG	2 cut(s)	265, 784
BseCI	ATCGAT	2 cut(s)	394, 832
BseDI	CCNNGG	1 cut(s)	76
BseGI	GGATG	2 cut(s)	511, 643
BseLI	CCNNNNNNNGG	3 cut(s)	199, 299, 300
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	2 cut(s)	265, 784
BseRI	GAGGAG	2 cut(s)	423, 725
BseXI	GCAGC	1 cut(s)	63
BshFI	GGCC	2 cut(s)	549, 717
BshNI	GGYRCC	1 cut(s)	454
BshVI	ATCGAT	2 cut(s)	394, 832
BslI	CCNNNNNNNGG	3 cut(s)	199, 299, 300
BsmAI	GTCTC	5 cut(s)	189, 203, 328, 681, 766
BsmBI	CGTCTC	2 cut(s)	203, 766
BsnI	GGCC	2 cut(s)	549, 717
Bsp119I	TTCGAA	1 cut(s)	609
Bsp143I	GATC	5 cut(s)	46, 234, 613, 825, 833
Bsp19I	CCATGG	1 cut(s)	76
BspACI	CCGC	2 cut(s)	718, 817
BspANI	GGCC	2 cut(s)	549, 717
BspCNI	CTCAG	1 cut(s)	274
BspDI	ATCGAT	2 cut(s)	394, 832
BspHI	TCATGA	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	456
BspMAI	CTGCAG	1 cut(s)	685
BspPI	GGATC	2 cut(s)	54, 820
BspT104I	TTCGAA	1 cut(s)	609
BspT107I	GGYRCC	1 cut(s)	454
BsrI	ACTGG	2 cut(s)	265, 784
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	5 cut(s)	46, 234, 613, 825, 833
BssNI	GRCGYC	1 cut(s)	455
BssSI	CACGAG	1 cut(s)	660
BssT1I	CCWWGG	1 cut(s)	76
Bst2BI	CACGAG	1 cut(s)	660
Bst6I	CTCTTC	1 cut(s)	792
BstACI	GRCGYC	1 cut(s)	455
BstBAI	YACGTR	1 cut(s)	518
BstBI	TTCGAA	1 cut(s)	609
BstC8I	GCNNGC	2 cut(s)	216, 220
BstDEI	CTNAG	1 cut(s)	282
BstDSI	CCRYGG	1 cut(s)	76
BstF5I	GGATG	2 cut(s)	511, 643
BstH2I	RGCGCY	2 cut(s)	458, 786
BstHHI	GCGC	3 cut(s)	205, 457, 785
BstKTI	GATC	5 cut(s)	49, 237, 616, 828, 836
BstMAI	GTCTC	5 cut(s)	189, 203, 328, 681, 766
BstMBI	GATC	5 cut(s)	46, 234, 613, 825, 833
BstMWI	GCNNNNNNNGC	1 cut(s)	211
BstSFI	CTRYAG	2 cut(s)	174, 681
BstV1I	GCAGC	1 cut(s)	63
Bsu15I	ATCGAT	2 cut(s)	394, 832
BsuRI	GGCC	2 cut(s)	549, 717
BsuTUI	ATCGAT	2 cut(s)	394, 832
BtgI	CCRYGG	1 cut(s)	76
BtsCI	GGATG	2 cut(s)	511, 643
BtsIMutI	CAGTG	1 cut(s)	844
Cac8I	GCNNGC	2 cut(s)	216, 220
CciI	TCATGA	1 cut(s)	351
CfoI	GCGC	3 cut(s)	205, 457, 785
Cfr13I	GGNCC	1 cut(s)	715
ClaI	ATCGAT	2 cut(s)	394, 832
CseI	GACGC	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	777
CspCI	CAANNNNNGTGG	2 cut(s)	326, 361
CviAII	CATG	3 cut(s)	77, 352, 634
CviQI	GTAC	1 cut(s)	777
DdeI	CTNAG	1 cut(s)	282
DinI	GGCGCC	1 cut(s)	456
DpnI	GATC	5 cut(s)	48, 236, 615, 827, 835
DpnII	GATC	5 cut(s)	46, 234, 613, 825, 833
DraI	TTTAAA	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	792
EarI	CTCTTC	1 cut(s)	792
Eco130I	CCWWGG	1 cut(s)	76
Eco57I	CTGAAG	2 cut(s)	39, 130
EcoT14I	CCWWGG	1 cut(s)	76
EgeI	GGCGCC	1 cut(s)	456
EheI	GGCGCC	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	76
Esp3I	CGTCTC	2 cut(s)	203, 766
FaeI	CATG	3 cut(s)	80, 355, 637
FalI	AAGNNNNNCTT	4 cut(s)	198, 230, 555, 587
FatI	CATG	3 cut(s)	76, 351, 633
Fnu4HI	GCNGC	3 cut(s)	52, 718, 817
FokI	GGATG	2 cut(s)	518, 650
Fsp4HI	GCNGC	3 cut(s)	52, 718, 817
FspBI	CTAG	1 cut(s)	261
GlaI	GCGC	3 cut(s)	204, 456, 784
GluI	GCNGC	3 cut(s)	52, 718, 817
GsuI	CTGGAG	1 cut(s)	468
HaeII	RGCGCY	2 cut(s)	458, 786
HaeIII	GGCC	2 cut(s)	549, 717
HgaI	GACGC	1 cut(s)	220
HhaI	GCGC	3 cut(s)	205, 457, 785
Hin1I	GRCGYC	1 cut(s)	455
Hin1II	CATG	3 cut(s)	80, 355, 637
Hin6I	GCGC	3 cut(s)	203, 455, 783
HinP1I	GCGC	3 cut(s)	203, 455, 783
HinfI	GANTC	1 cut(s)	251
HphI	GGTGA	6 cut(s)	392, 526, 578, 716, 769, 781
Hpy166II	GTNNAC	2 cut(s)	569, 727
Hpy188I	TCNGA	4 cut(s)	149, 194, 272, 283
Hpy188III	TCNNGA	3 cut(s)	71, 128, 352
Hpy8I	GTNNAC	2 cut(s)	569, 727
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	3 cut(s)	267, 349, 547
HpyCH4IV	ACGT	3 cut(s)	517, 687, 775
HpyCH4V	TGCA	3 cut(s)	185, 412, 683
HpyF10VI	GCNNNNNNNGC	1 cut(s)	211
HpyF3I	CTNAG	1 cut(s)	282
HpySE526I	ACGT	3 cut(s)	517, 687, 775
Hsp92I	GRCGYC	1 cut(s)	455
Hsp92II	CATG	3 cut(s)	80, 355, 637
HspAI	GCGC	3 cut(s)	203, 455, 783
KasI	GGCGCC	1 cut(s)	454
Kzo9I	GATC	5 cut(s)	46, 234, 613, 825, 833
LmnI	GCTCC	1 cut(s)	810
LpnPI	CCDG	8 cut(s)	30, 278, 437, 450, 498, 567, 693, 765
Lsp1109I	GCAGC	1 cut(s)	63
LweI	GCATC	2 cut(s)	172, 792
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	3 cut(s)	517, 687, 775
MaeIII	GTNAC	3 cut(s)	309, 532, 704
MalI	GATC	5 cut(s)	48, 236, 615, 827, 835
MboI	GATC	5 cut(s)	46, 234, 613, 825, 833
MboII	GAAGA	5 cut(s)	335, 471, 623, 705, 809
MluCI	AATT	7 cut(s)	5, 24, 165, 295, 387, 582, 696
Mly113I	GGCGCC	1 cut(s)	455
MnlI	CCTC	7 cut(s)	277, 352, 441, 444, 703, 706, 753
MseI	TTAA	4 cut(s)	27, 60, 90, 168
MspA1I	CMGCKG	1 cut(s)	819
MwoI	GCNNNNNNNGC	1 cut(s)	211
NarI	GGCGCC	1 cut(s)	455
NcoI	CCATGG	1 cut(s)	76
NdeII	GATC	5 cut(s)	46, 234, 613, 825, 833
NlaIII	CATG	3 cut(s)	80, 355, 637
NlaIV	GGNNCC	1 cut(s)	456
NmuCI	GTSAC	2 cut(s)	532, 704
NspV	TTCGAA	1 cut(s)	609
PagI	TCATGA	1 cut(s)	351
PfeI	GAWTC	1 cut(s)	251
PkrI	GCNGC	3 cut(s)	53, 719, 818
PluTI	GGCGCC	1 cut(s)	458
Ppu21I	YACGTR	1 cut(s)	518
PspN4I	GGNNCC	1 cut(s)	456
PspPI	GGNCC	1 cut(s)	715
PstI	CTGCAG	1 cut(s)	685
RsaI	GTAC	1 cut(s)	778
RsaNI	GTAC	1 cut(s)	777
SaqAI	TTAA	4 cut(s)	27, 60, 90, 168
SatI	GCNGC	3 cut(s)	52, 718, 817
Sau3AI	GATC	5 cut(s)	46, 234, 613, 825, 833
Sau96I	GGNCC	1 cut(s)	715
SfaNI	GCATC	2 cut(s)	172, 792
SfcI	CTRYAG	2 cut(s)	174, 681
SfoI	GGCGCC	1 cut(s)	456
SfuI	TTCGAA	1 cut(s)	609
Sse9I	AATT	7 cut(s)	5, 24, 165, 295, 387, 582, 696
SsiI	CCGC	2 cut(s)	718, 817
SspDI	GGCGCC	1 cut(s)	454
SspMI	CTAG	1 cut(s)	261
StyI	CCWWGG	1 cut(s)	76
TaiI	ACGT	3 cut(s)	520, 690, 778
TaqI	TCGA	6 cut(s)	41, 72, 394, 586, 609, 832
TasI	AATT	7 cut(s)	5, 24, 165, 295, 387, 582, 696
TauI	GCSGC	2 cut(s)	720, 819
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	4 cut(s)	27, 60, 90, 168
Tru9I	TTAA	4 cut(s)	27, 60, 90, 168
TseFI	GTSAC	2 cut(s)	532, 704
TseI	GCWGC	1 cut(s)	51
Tsp45I	GTSAC	2 cut(s)	532, 704
TspGWI	ACGGA	3 cut(s)	59, 328, 518
XcmI	CCANNNNNNNNNTGG	2 cut(s)	301, 337
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.