Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0014703

Physical Location & Seq

Genomic Coordinates Forward (+)

67271177 .. 67274306

Gene Structure 3130 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035472

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGCTCCTCTACCTGACACCCTCCTCTCACATTCCTATCCAGACTCCCACTTCCACTTCCTACTCCGTCATCTTTGACACCGAAAGCTATGGCAGCCGCGTCCATGTCTTCTCCTTTGACCACAACCTCAATGTGCTCCCCATCGACAAAGATCTCGACCTCTTCCTTCAGATCAAGCCGGAGCTCAGCTTTTACGCCGCCAACCCTCGCAGCGTTGCCCAGTCACTCACCAATCTCCTCCAAAAGGCGAAGGCTGCCTTTCCCAAAGACCTTCAATCCATGTTCAAAAGGCTGTTTGAGGTTGTTCCCAATTTTGGGTTGGTGTTACGAAACAAAGAAGAAGCTAAGAAACAAATGGAATGGTTAATGAAGGAGATTTGTCAAAAAGCCTTTGGTGATTTAATCCTCTCCCAGCAATATTGGTTGAATGCTCGACAAGAGATTCATAATTGGTCACCTTTTGTCCCGCCAAATCCTGCGCCAGAGGTTGTCAATAATCAGTTGATTGAGGAAAAAAGAAGTTTGTACTTCACCTTCTCCAAAGGCCACCCTGTCTCAATAGAAGAACTCCGAACCCTAATTCGACGATGGAATTTCGAAGATCGAGTAGAGAGAATTCACATGCTGACTATCCTTTCGGCTCGTGTTCTTTGTAAGTCTCCCGCAGACGTTAGAAGAATTGTTGGTGAGGAGGAGGGCCGCACAGTCCACTTCTCAATCAATGCCAAAGATGTTAGGGTGAGGAAATGGCTCCCAAATGGGAAAAAAATGCTTCAAAGAGGCCGCTTGATCTATTACAACTGCACCAACGGGCTTGTATTCAGGTGCAATCAACTTTTTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 map00230 map00240

Pfam Domains

Protein Families

GDA1_CD39

Protein Analysis

282

Amino Acids

32.84

Weight (kDa)

9.55

Isoelectric Point (pI)

63.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDA1_CD39	PF01150	14 - 94	5.2e-13	GDA1/CD39 (nucleoside phosphatase) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014703)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33792
malus_domestica	MD03G1108800.v1.1 MD11G1122600.v1.1
prunus_persica	Prupe.3G138200_v2.0.a1 Prupe.6G092000_v2.0.a1
rosa_laevigata	RLG00000014218 RLG00000035462 RLG00000035472
rosa_multiflora	Rmu_co8089466.1_g000001 Rmu_sc0000338.1_g000001 Rmu_sc0000689.1_g000003
rosa_roxburghii	Rroxscaffold_1G00019350
rosa_rugosa	Rorug05G0339900
rosa_samantha	Rh5AG402100 Rh5BG414300 Rh5CG438900 Rh5DG428900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	99
AciI	CCGC	6 cut(s)	97, 198, 467, 663, 700, 784
AcsI	RAATTY	2 cut(s)	592, 615
AcuI	CTGAAG	1 cut(s)	152
AfaI	GTAC	1 cut(s)	527
AfiI	CCNNNNNNNGG	3 cut(s)	244, 314, 315
AgsI	TTSAA	4 cut(s)	275, 286, 427, 776
AluBI	AGCT	4 cut(s)	87, 184, 189, 344
AluI	AGCT	4 cut(s)	87, 184, 189, 344
Alw21I	GWGCWC	2 cut(s)	138, 186
Alw26I	GTCTC	2 cut(s)	559, 663
AoxI	GGCC	3 cut(s)	544, 697, 781
ApeKI	GCWGC	3 cut(s)	93, 210, 254
ApoI	RAATTY	2 cut(s)	592, 615
ArsI	GACNNNNNNTTYG	2 cut(s)	619, 651
AspLEI	GCGC	1 cut(s)	481
AspS9I	GGNCC	1 cut(s)	697
AsuHPI	GGTGA	6 cut(s)	220, 407, 447, 523, 698, 751
AsuII	TTCGAA	1 cut(s)	597
BanII	GRGCYC	1 cut(s)	186
BarI	GAAGNNNNNNTAC	2 cut(s)	518, 550
BauI	CACGAG	1 cut(s)	642
BbsI	GAAGAC	1 cut(s)	100
Bbv12I	GWGCWC	2 cut(s)	138, 186
BbvI	GCAGC	3 cut(s)	105, 222, 241
BccI	CCATC	2 cut(s)	149, 582
BcoDI	GTCTC	2 cut(s)	559, 663
BglII	AGATCT	1 cut(s)	151
BisI	GCNGC	7 cut(s)	94, 97, 198, 211, 255, 700, 784
BlpI	GCTNAGC	1 cut(s)	185
BlsI	GCNGC	7 cut(s)	95, 98, 199, 212, 256, 701, 785
BmgT120I	GGNCC	1 cut(s)	697
BmiI	GGNNCC	1 cut(s)	752
BmrI	ACTGGG	1 cut(s)	214
BmuI	ACTGGG	1 cut(s)	214
BpiI	GAAGAC	1 cut(s)	100
Bpu1102I	GCTNAGC	1 cut(s)	185
Bpu14I	TTCGAA	1 cut(s)	597
Bsc4I	CCNNNNNNNGG	3 cut(s)	244, 314, 315
Bse1I	ACTGG	1 cut(s)	220
BseLI	CCNNNNNNNGG	3 cut(s)	244, 314, 315
BseMII	CTCAG	1 cut(s)	199
BseNI	ACTGG	1 cut(s)	220
BseRI	GAGGAG	4 cut(s)	13, 227, 704, 707
BseXI	GCAGC	3 cut(s)	105, 222, 241
BseYI	CCCAGC	1 cut(s)	411
BsgI	GTGCAG	1 cut(s)	787
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	3 cut(s)	546, 699, 783
BsiHKAI	GWGCWC	2 cut(s)	138, 186
BsiSI	CCGG	1 cut(s)	179
BslFI	GGGAC	1 cut(s)	449
BslI	CCNNNNNNNGG	3 cut(s)	244, 314, 315
BsmAI	GTCTC	2 cut(s)	559, 663
BsmFI	GGGAC	1 cut(s)	449
BsmI	GAATGC	1 cut(s)	433
BsnI	GGCC	3 cut(s)	546, 699, 783
Bsp119I	TTCGAA	1 cut(s)	597
Bsp1286I	GDGCHC	2 cut(s)	138, 186
Bsp143I	GATC	4 cut(s)	151, 171, 601, 789
Bsp1720I	GCTNAGC	1 cut(s)	185
BspACI	CCGC	6 cut(s)	97, 198, 467, 663, 700, 784
BspANI	GGCC	3 cut(s)	546, 699, 783
BspCNI	CTCAG	1 cut(s)	198
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	752
BspT104I	TTCGAA	1 cut(s)	597
BsrI	ACTGG	1 cut(s)	220
BssMI	GATC	4 cut(s)	151, 171, 601, 789
BssSI	CACGAG	1 cut(s)	642
Bst2BI	CACGAG	1 cut(s)	642
Bst4CI	ACNGT	1 cut(s)	706
Bst6I	CTCTTC	1 cut(s)	167
BstBI	TTCGAA	1 cut(s)	597
BstDEI	CTNAG	2 cut(s)	185, 345
BstEII	GGTNACC	1 cut(s)	453
BstENI	CCTNNNNNAGG	1 cut(s)	242
BstFNI	CGCG	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	481
BstKTI	GATC	4 cut(s)	154, 174, 604, 792
BstMAI	GTCTC	2 cut(s)	559, 663
BstMBI	GATC	4 cut(s)	151, 171, 601, 789
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 254
BstNSI	RCATGY	1 cut(s)	625
BstPI	GGTNACC	1 cut(s)	453
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	3 cut(s)	105, 222, 241
BstV2I	GAAGAC	1 cut(s)	100
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BsuRI	GGCC	3 cut(s)	546, 699, 783
CfoI	GCGC	1 cut(s)	481
Cfr13I	GGNCC	1 cut(s)	697
CseI	GACGC	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	526
CviAII	CATG	3 cut(s)	104, 280, 622
CviQI	GTAC	1 cut(s)	526
DdeI	CTNAG	2 cut(s)	185, 345
DpnI	GATC	4 cut(s)	153, 173, 603, 791
DpnII	GATC	4 cut(s)	151, 171, 601, 789
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
Ecl136II	GAGCTC	1 cut(s)	184
Eco24I	GRGCYC	1 cut(s)	186
Eco53kI	GAGCTC	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	152
Eco91I	GGTNACC	1 cut(s)	453
EcoICRI	GAGCTC	1 cut(s)	184
EcoNI	CCTNNNNNAGG	1 cut(s)	242
EcoO65I	GGTNACC	1 cut(s)	453
EcoRI	GAATTC	1 cut(s)	615
EcoT38I	GRGCYC	1 cut(s)	186
FaeI	CATG	3 cut(s)	107, 283, 625
FaiI	YATR	5 cut(s)	90, 105, 281, 447, 623
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FaqI	GGGAC	1 cut(s)	449
FatI	CATG	3 cut(s)	103, 279, 621
FauI	CCCGC	2 cut(s)	474, 670
Fnu4HI	GCNGC	7 cut(s)	94, 97, 198, 211, 255, 700, 784
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	7 cut(s)	94, 97, 198, 211, 255, 700, 784
GlaI	GCGC	1 cut(s)	480
GluI	GCNGC	7 cut(s)	94, 97, 198, 211, 255, 700, 784
GsaI	CCCAGC	1 cut(s)	415
HaeIII	GGCC	3 cut(s)	546, 699, 783
HapII	CCGG	1 cut(s)	179
HgaI	GACGC	1 cut(s)	88
HhaI	GCGC	1 cut(s)	481
Hin1II	CATG	3 cut(s)	107, 283, 625
Hin6I	GCGC	1 cut(s)	479
HinP1I	GCGC	1 cut(s)	479
HinfI	GANTC	2 cut(s)	43, 442
HpaII	CCGG	1 cut(s)	179
HphI	GGTGA	6 cut(s)	220, 407, 447, 523, 698, 751
Hpy166II	GTNNAC	1 cut(s)	709
Hpy188I	TCNGA	2 cut(s)	171, 572
Hpy188III	TCNNGA	2 cut(s)	40, 155
Hpy8I	GTNNAC	1 cut(s)	709
Hpy99I	CGWCG	1 cut(s)	588
HpyAV	CCTTC	5 cut(s)	176, 244, 281, 364, 544
HpyCH4III	ACNGT	1 cut(s)	706
HpyCH4IV	ACGT	1 cut(s)	669
HpyCH4V	TGCA	2 cut(s)	804, 828
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 254
HpyF3I	CTNAG	2 cut(s)	185, 345
HpySE526I	ACGT	1 cut(s)	669
Hsp92II	CATG	3 cut(s)	107, 283, 625
HspAI	GCGC	1 cut(s)	479
Kzo9I	GATC	4 cut(s)	151, 171, 601, 789
LmnI	GCTCC	4 cut(s)	9, 141, 181, 756
LpnPI	CCDG	9 cut(s)	26, 53, 192, 233, 425, 489, 495, 564, 808
Lsp1109I	GCAGC	3 cut(s)	105, 222, 241
MaeII	ACGT	1 cut(s)	669
MaeIII	GTNAC	3 cut(s)	222, 324, 453
MalI	GATC	4 cut(s)	153, 173, 603, 791
MboI	GATC	4 cut(s)	151, 171, 601, 789
MboII	GAAGA	6 cut(s)	100, 154, 350, 575, 611, 687
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	2 cut(s)	138, 186
MluCI	AATT	6 cut(s)	310, 448, 579, 592, 615, 678
MlyI	GAGTC	1 cut(s)	37
MseI	TTAA	2 cut(s)	365, 401
MspI	CCGG	1 cut(s)	179
Mva1269I	GAATGC	1 cut(s)	433
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	2 cut(s)	93, 254
NdeII	GATC	4 cut(s)	151, 171, 601, 789
NlaIII	CATG	3 cut(s)	107, 283, 625
NlaIV	GGNNCC	1 cut(s)	752
NmuCI	GTSAC	2 cut(s)	222, 453
NspI	RCATGY	1 cut(s)	625
NspV	TTCGAA	1 cut(s)	597
PctI	GAATGC	1 cut(s)	433
PfeI	GAWTC	1 cut(s)	442
PkrI	GCNGC	7 cut(s)	95, 98, 199, 212, 256, 701, 785
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
Psp124BI	GAGCTC	1 cut(s)	186
PspEI	GGTNACC	1 cut(s)	453
PspFI	CCCAGC	1 cut(s)	411
PspN4I	GGNNCC	1 cut(s)	752
PspPI	GGNCC	1 cut(s)	697
PsuI	RGATCY	1 cut(s)	151
RsaI	GTAC	1 cut(s)	527
RsaNI	GTAC	1 cut(s)	526
SacI	GAGCTC	1 cut(s)	186
SaqAI	TTAA	2 cut(s)	365, 401
SatI	GCNGC	7 cut(s)	94, 97, 198, 211, 255, 700, 784
Sau3AI	GATC	4 cut(s)	151, 171, 601, 789
Sau96I	GGNCC	1 cut(s)	697
SchI	GAGTC	1 cut(s)	37
SduI	GDGCHC	2 cut(s)	138, 186
SfuI	TTCGAA	1 cut(s)	597
Sse9I	AATT	6 cut(s)	310, 448, 579, 592, 615, 678
SsiI	CCGC	6 cut(s)	97, 198, 467, 663, 700, 784
SspI	AATATT	1 cut(s)	419
SstI	GAGCTC	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	706
TaiI	ACGT	1 cut(s)	672
TaqI	TCGA	6 cut(s)	144, 156, 433, 583, 597, 604
TasI	AATT	6 cut(s)	310, 448, 579, 592, 615, 678
TatI	WGTACW	1 cut(s)	525
TauI	GCSGC	4 cut(s)	99, 200, 702, 786
TfiI	GAWTC	1 cut(s)	442
Tru1I	TTAA	2 cut(s)	365, 401
Tru9I	TTAA	2 cut(s)	365, 401
TseFI	GTSAC	2 cut(s)	222, 453
TseI	GCWGC	3 cut(s)	93, 210, 254
Tsp45I	GTSAC	2 cut(s)	222, 453
TspDTI	ATGAA	2 cut(s)	383, 434
TspGWI	ACGGA	1 cut(s)	55
XagI	CCTNNNNNAGG	1 cut(s)	242
XapI	RAATTY	2 cut(s)	592, 615
XceI	RCATGY	1 cut(s)	625
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.