Prupe.3G138200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0014703
Physical Location & Seq
Reverse (-)
14589939 .. 14591724
1786 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G138200.1

Sequence Viewer

Length: 762 bp
ATGACGTGTACTGCCACTTATATCACCATGAAATCTTCTGACAGAGCCCTTCAAGAACTTAAGCTTTTCCATACAATCGATCGCAACATATATTCTCGACTGTTGAAGGGGTTAGGTTTTGACCCTATCCTATCCAAGTATATCGTAGCCCTTTGGCACACGCTTGAAAGACAAAGTATTGGCCAGAAATTTATGGTGAATACCTTATTTTTGCACGATCCATTCTTCAATGACTTGGCAAACGAGTCTTTTGAGTTACTGAAACGTTTGTATTCAGATTGCGTTCATCCTCCATTCGAGGACACCGATAGCCAGTTTCTGAAACTGCGTCTTCTTGTTCCGGTAAAAGTTTCACTAAGTTCTGTGTTTAACAAGGAACACACCAAGCAAATCATGGAGGACTTTGTGAACGAAGTGTGTGAGAGTGCTTTTACCCAAGAAGCATGTGAAGAAAGACATGATCGGCACCAGCCTAATGCTGACAAGAATGAAATAACTTTGTTCTTGACCTTCTCAAGGGGCCATCCTGTTTCAGAAGAACTCAGAGGCTTCTTTACAAGGAAATTTGGAGAGTGTATAGAAGCAATATGTATGGGAGCAGAGGAGCGAAATTCGCAGCCACTGTTTGCTCGTGGTGTTGTTAAGTCTTCCTCAGACATCACAAAAATTCTTGTTGGCGTAGACGACAGCGGCAAAGTCAAATTCTCAATTCATGGGAAAGATGTTATCGTCAGACGCTTCTTTCCAAGACAAAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

254

Amino Acids

29.2

Weight (kDa)

7.11

Isoelectric Point (pI)

50.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 465
AccI GTMKAC 1 cut(s) 681
AciI CCGC 1 cut(s) 690
AclI AACGTT 1 cut(s) 265
AclWI GGATC 1 cut(s) 212
AcoI YGGCCR 1 cut(s) 181
AcsI RAATTY 5 cut(s) 188, 563, 610, 666, 701
AfaI GTAC 1 cut(s) 10
AfiI CCNNNNNNNGG 1 cut(s) 516
AflII CTTAAG 1 cut(s) 59
AflIII ACRYGT 1 cut(s) 5
AgsI TTSAA 4 cut(s) 53, 106, 167, 229
AjiI CACGTC 1 cut(s) 6
AluBI AGCT 1 cut(s) 64
AluI AGCT 1 cut(s) 64
AlwI GGATC 1 cut(s) 212
AlwNI CAGNNNCTG 2 cut(s) 319, 622
AoxI GGCC 2 cut(s) 181, 520
ApeKI GCWGC 1 cut(s) 616
ApoI RAATTY 5 cut(s) 188, 563, 610, 666, 701
AspS9I GGNCC 1 cut(s) 520
AsuHPI GGTGA 2 cut(s) 16, 208
BalI TGGCCA 1 cut(s) 183
BanI GGYRCC 1 cut(s) 465
BanII GRGCYC 1 cut(s) 49
BauI CACGAG 1 cut(s) 630
BbsI GAAGAC 2 cut(s) 323, 639
BbvI GCAGC 1 cut(s) 628
BccI CCATC 1 cut(s) 531
BfrI CTTAAG 1 cut(s) 59
BisI GCNGC 2 cut(s) 617, 691
BlsI GCNGC 2 cut(s) 618, 692
BmgBI CACGTC 1 cut(s) 6
BmgT120I GGNCC 1 cut(s) 520
BmiI GGNNCC 2 cut(s) 467, 521
BpiI GAAGAC 2 cut(s) 323, 639
BpuEI CTTGAG 1 cut(s) 499
Bsa29I ATCGAT 1 cut(s) 78
BsaWI WCCGGW 1 cut(s) 340
Bsc4I CCNNNNNNNGG 1 cut(s) 516
Bse1I ACTGG 1 cut(s) 313
BseCI ATCGAT 1 cut(s) 78
BseGI GGATG 2 cut(s) 286, 523
BseLI CCNNNNNNNGG 1 cut(s) 516
BseMII CTCAG 2 cut(s) 556, 666
BseNI ACTGG 1 cut(s) 313
BseRI GAGGAG 1 cut(s) 617
BseXI GCAGC 1 cut(s) 628
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 2 cut(s) 183, 522
BshNI GGYRCC 1 cut(s) 465
BshVI ATCGAT 1 cut(s) 78
BsiEI CGRYCG 1 cut(s) 82
BsiSI CCGG 1 cut(s) 341
BslI CCNNNNNNNGG 1 cut(s) 516
BsnI GGCC 2 cut(s) 183, 522
Bsp1286I GDGCHC 1 cut(s) 49
Bsp143I GATC 3 cut(s) 79, 217, 460
BspACI CCGC 1 cut(s) 690
BspANI GGCC 2 cut(s) 183, 522
BspCNI CTCAG 2 cut(s) 555, 665
BspDI ATCGAT 1 cut(s) 78
BspLI GGNNCC 2 cut(s) 467, 521
BspPI GGATC 1 cut(s) 212
BspT107I GGYRCC 1 cut(s) 465
BspTI CTTAAG 1 cut(s) 59
BsrI ACTGG 1 cut(s) 313
BssMI GATC 3 cut(s) 79, 217, 460
BssSI CACGAG 1 cut(s) 630
Bst2BI CACGAG 1 cut(s) 630
Bst4CI ACNGT 2 cut(s) 102, 624
BstAFI CTTAAG 1 cut(s) 59
BstDEI CTNAG 3 cut(s) 356, 542, 652
BstENI CCTNNNNNAGG 1 cut(s) 514
BstF5I GGATG 2 cut(s) 286, 523
BstKTI GATC 3 cut(s) 82, 220, 463
BstMBI GATC 3 cut(s) 79, 217, 460
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 1 cut(s) 613
BstNSI RCATGY 1 cut(s) 447
BstV1I GCAGC 1 cut(s) 628
BstV2I GAAGAC 2 cut(s) 323, 639
Bsu15I ATCGAT 1 cut(s) 78
BsuRI GGCC 2 cut(s) 183, 522
BsuTUI ATCGAT 1 cut(s) 78
BtrI CACGTC 1 cut(s) 6
BtsCI GGATG 2 cut(s) 286, 523
BtsIMutI CAGTG 1 cut(s) 620
CaiI CAGNNNCTG 2 cut(s) 319, 622
Cfr13I GGNCC 1 cut(s) 520
ClaI ATCGAT 1 cut(s) 78
CseI GACGC 2 cut(s) 317, 744
Csp6I GTAC 1 cut(s) 9
CviAII CATG 5 cut(s) 28, 394, 444, 458, 713
CviJI RGCY 9 cut(s) 47, 64, 149, 183, 312, 472, 522, 549, 619
CviKI_1 RGCY 9 cut(s) 47, 64, 149, 183, 312, 472, 522, 549, 619
CviQI GTAC 1 cut(s) 9
DdeI CTNAG 3 cut(s) 356, 542, 652
DpnI GATC 3 cut(s) 81, 219, 462
DpnII GATC 3 cut(s) 79, 217, 460
EaeI YGGCCR 1 cut(s) 181
Eco24I GRGCYC 1 cut(s) 49
EcoNI CCTNNNNNAGG 1 cut(s) 514
EcoT38I GRGCYC 1 cut(s) 49
FaeI CATG 5 cut(s) 31, 397, 447, 461, 716
FatI CATG 5 cut(s) 27, 393, 443, 457, 712
FblI GTMKAC 1 cut(s) 681
Fnu4HI GCNGC 2 cut(s) 617, 691
FokI GGATG 2 cut(s) 273, 510
FriOI GRGCYC 1 cut(s) 49
Fsp4HI GCNGC 2 cut(s) 617, 691
GluI GCNGC 2 cut(s) 617, 691
HaeIII GGCC 2 cut(s) 183, 522
HapII CCGG 1 cut(s) 341
HgaI GACGC 2 cut(s) 317, 744
Hin1II CATG 5 cut(s) 31, 397, 447, 461, 716
HindIII AAGCTT 1 cut(s) 62
HinfI GANTC 1 cut(s) 245
HpaII CCGG 1 cut(s) 341
HphI GGTGA 2 cut(s) 16, 208
Hpy166II GTNNAC 3 cut(s) 9, 409, 682
Hpy188I TCNGA 7 cut(s) 40, 277, 321, 535, 545, 655, 734
Hpy188III TCNNGA 3 cut(s) 53, 96, 505
Hpy8I GTNNAC 3 cut(s) 9, 409, 682
HpyAV CCTTC 3 cut(s) 59, 100, 520
HpyCH4III ACNGT 2 cut(s) 102, 624
HpyCH4IV ACGT 2 cut(s) 5, 265
HpyCH4V TGCA 1 cut(s) 214
HpyF10VI GCNNNNNNNGC 1 cut(s) 613
HpyF3I CTNAG 3 cut(s) 356, 542, 652
HpySE526I ACGT 2 cut(s) 5, 265
Hsp92II CATG 5 cut(s) 31, 397, 447, 461, 716
Kzo9I GATC 3 cut(s) 79, 217, 460
LmnI GCTCC 2 cut(s) 596, 604
LpnPI CCDG 5 cut(s) 197, 326, 354, 482, 540
Lsp1109I GCAGC 1 cut(s) 628
MaeII ACGT 2 cut(s) 5, 265
MaeIII GTNAC 1 cut(s) 255
MalI GATC 3 cut(s) 81, 219, 462
MboI GATC 3 cut(s) 79, 217, 460
MboII GAAGA 6 cut(s) 27, 217, 323, 461, 548, 639
MhlI GDGCHC 1 cut(s) 49
MlsI TGGCCA 1 cut(s) 183
MluCI AATT 6 cut(s) 188, 563, 610, 666, 701, 708
MluNI TGGCCA 1 cut(s) 183
MlyI GAGTC 1 cut(s) 254
MnlI CCTC 6 cut(s) 292, 300, 391, 539, 595, 661
Mox20I TGGCCA 1 cut(s) 183
MscI TGGCCA 1 cut(s) 183
MseI TTAA 3 cut(s) 60, 369, 642
Msp20I TGGCCA 1 cut(s) 183
MspA1I CMGCKG 1 cut(s) 690
MspCI CTTAAG 1 cut(s) 59
MspI CCGG 1 cut(s) 341
MwoI GCNNNNNNNGC 1 cut(s) 613
NdeII GATC 3 cut(s) 79, 217, 460
NlaIII CATG 5 cut(s) 31, 397, 447, 461, 716
NlaIV GGNNCC 2 cut(s) 467, 521
NspI RCATGY 1 cut(s) 447
PcsI WCGNNNNNNNCGW 1 cut(s) 303
PkrI GCNGC 2 cut(s) 618, 692
Ple19I CGATCG 1 cut(s) 82
PleI GAGTC 1 cut(s) 253
PpsI GAGTC 1 cut(s) 253
Psp1406I AACGTT 1 cut(s) 265
PspN4I GGNNCC 2 cut(s) 467, 521
PspPI GGNCC 1 cut(s) 520
PstNI CAGNNNCTG 2 cut(s) 319, 622
PvuI CGATCG 1 cut(s) 82
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
SaqAI TTAA 3 cut(s) 60, 369, 642
SatI GCNGC 2 cut(s) 617, 691
Sau3AI GATC 3 cut(s) 79, 217, 460
Sau96I GGNCC 1 cut(s) 520
SchI GAGTC 1 cut(s) 254
SduI GDGCHC 1 cut(s) 49
SetI ASST 6 cut(s) 8, 66, 118, 206, 268, 512
SmlI CTYRAG 2 cut(s) 59, 514
SmoI CTYRAG 2 cut(s) 59, 514
Sse9I AATT 6 cut(s) 188, 563, 610, 666, 701, 708
SsiI CCGC 1 cut(s) 690
TaaI ACNGT 2 cut(s) 102, 624
TaiI ACGT 2 cut(s) 8, 268
TaqI TCGA 3 cut(s) 78, 97, 297
TasI AATT 6 cut(s) 188, 563, 610, 666, 701, 708
TatI WGTACW 1 cut(s) 8
TauI GCSGC 1 cut(s) 693
Tru1I TTAA 3 cut(s) 60, 369, 642
Tru9I TTAA 3 cut(s) 60, 369, 642
TscAI CASTG 1 cut(s) 627
TseI GCWGC 1 cut(s) 616
TspDTI ATGAA 4 cut(s) 44, 275, 504, 701
TspRI CASTG 1 cut(s) 627
Vha464I CTTAAG 1 cut(s) 59
XagI CCTNNNNNAGG 1 cut(s) 514
XapI RAATTY 5 cut(s) 188, 563, 610, 666, 701
XceI RCATGY 1 cut(s) 447
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
XmiI GTMKAC 1 cut(s) 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.