Rmu_co8089466.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8089466.1
OG0014703
Physical Location & Seq
Reverse (-)
11 .. 547
537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8089466.1_g000001.1.cds

Sequence Viewer

Length: 537 bp
atggatcgcaacatatatagacggcttctccagcatggatttgatcttaatcactccaagtccattgtagccttttggtattttctagataaaaaaaaccacttcatatttatggcagagaaaattaaacctataggcgatgcagagttcagggagttggcaaacgagacgcttgcgtgcttaacttatttgattacagattgtaatatttctcaacctagccagttcaaaaggctgtttgaggttgttcccaattttgggttggtgttacggaacaaagaagaagctaagaaacaaatggaatggttaattaaggagatttgtgaaaaagcctttggtgatataattctctcccagcaatattggttgaacggtcgacaagagattcataattggtcaccttttgtcccgccaaatcctgcgccagaggttgtcaataatcagttgaatgatgaaaaaagaagtttgtacttcaccttctccaacggccaccctgtctcaatagaagaactccgaaccctaattcgacgatggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

21.18

Weight (kDa)

7.74

Isoelectric Point (pI)

64.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 376
AciI CCGC 1 cut(s) 410
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 487
AfaI GTAC 1 cut(s) 470
AfiI CCNNNNNNNGG 2 cut(s) 257, 258
AgsI TTSAA 3 cut(s) 229, 370, 448
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
AluBI AGCT 1 cut(s) 287
AluI AGCT 1 cut(s) 287
Alw26I GTCTC 2 cut(s) 161, 502
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 487
AspLEI GCGC 1 cut(s) 424
AsuHPI GGTGA 3 cut(s) 350, 390, 466
BarI GAAGNNNNNNTAC 2 cut(s) 461, 493
BccI CCATC 1 cut(s) 525
BceAI ACGGC 2 cut(s) 38, 502
BcgI CGANNNNNNTGC 2 cut(s) 155, 189
BcoDI GTCTC 2 cut(s) 161, 502
BfaI CTAG 2 cut(s) 86, 219
BfmI CTRYAG 1 cut(s) 132
BmsI GCATC 1 cut(s) 130
BpmI CTGGAG 1 cut(s) 14
BsaBI GATNNNNATC 1 cut(s) 48
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 258
Bse1I ACTGG 1 cut(s) 223
Bse8I GATNNNNATC 1 cut(s) 48
BseJI GATNNNNATC 1 cut(s) 48
BseLI CCNNNNNNNGG 2 cut(s) 257, 258
BseNI ACTGG 1 cut(s) 223
BseYI CCCAGC 1 cut(s) 354
Bsh1285I CGRYCG 1 cut(s) 376
BshFI GGCC 1 cut(s) 489
BsiEI CGRYCG 1 cut(s) 376
BslFI GGGAC 1 cut(s) 392
BslI CCNNNNNNNGG 2 cut(s) 257, 258
BsmAI GTCTC 2 cut(s) 161, 502
BsmBI CGTCTC 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 392
BsnI GGCC 1 cut(s) 489
Bsp143I GATC 2 cut(s) 4, 43
BspACI CCGC 1 cut(s) 410
BspANI GGCC 1 cut(s) 489
BspPI GGATC 1 cut(s) 12
BsrI ACTGG 1 cut(s) 223
BssMI GATC 2 cut(s) 4, 43
Bst4CI ACNGT 1 cut(s) 374
BstC8I GCNNGC 2 cut(s) 174, 178
BstDEI CTNAG 1 cut(s) 288
BstEII GGTNACC 1 cut(s) 396
BstHHI GCGC 1 cut(s) 424
BstKTI GATC 2 cut(s) 7, 46
BstMAI GTCTC 2 cut(s) 161, 502
BstMBI GATC 2 cut(s) 4, 43
BstMCI CGRYCG 1 cut(s) 376
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstPI GGTNACC 1 cut(s) 396
BstSFI CTRYAG 1 cut(s) 132
BsuRI GGCC 1 cut(s) 489
BtgZI GCGATG 1 cut(s) 153
Cac8I GCNNGC 2 cut(s) 174, 178
CfoI GCGC 1 cut(s) 424
CseI GACGC 1 cut(s) 178
Csp6I GTAC 1 cut(s) 469
CviAII CATG 1 cut(s) 35
CviJI RGCY 7 cut(s) 25, 71, 222, 235, 287, 332, 489
CviKI_1 RGCY 7 cut(s) 25, 71, 222, 235, 287, 332, 489
CviQI GTAC 1 cut(s) 469
DdeI CTNAG 1 cut(s) 288
DpnI GATC 2 cut(s) 6, 45
DpnII GATC 2 cut(s) 4, 43
EaeI YGGCCR 1 cut(s) 487
Eco91I GGTNACC 1 cut(s) 396
EcoO65I GGTNACC 1 cut(s) 396
Esp3I CGTCTC 1 cut(s) 161
FaeI CATG 1 cut(s) 38
FaiI YATR 9 cut(s) 14, 16, 18, 36, 107, 113, 134, 344, 390
FaqI GGGAC 1 cut(s) 392
FatI CATG 1 cut(s) 34
FauI CCCGC 1 cut(s) 417
FblI GTMKAC 1 cut(s) 376
FspBI CTAG 2 cut(s) 86, 219
GlaI GCGC 1 cut(s) 423
GsaI CCCAGC 1 cut(s) 358
GsuI CTGGAG 1 cut(s) 14
HaeIII GGCC 1 cut(s) 489
HgaI GACGC 1 cut(s) 178
HhaI GCGC 1 cut(s) 424
Hin1II CATG 1 cut(s) 38
Hin6I GCGC 1 cut(s) 422
HinP1I GCGC 1 cut(s) 422
HincII GTYRAC 1 cut(s) 377
HindII GTYRAC 1 cut(s) 377
HinfI GANTC 1 cut(s) 385
HphI GGTGA 3 cut(s) 350, 390, 466
Hpy166II GTNNAC 1 cut(s) 377
Hpy188I TCNGA 1 cut(s) 515
Hpy188III TCNNGA 1 cut(s) 86
Hpy8I GTNNAC 1 cut(s) 377
Hpy99I CGWCG 1 cut(s) 531
HpyAV CCTTC 1 cut(s) 487
HpyCH4III ACNGT 1 cut(s) 374
HpyCH4V TGCA 1 cut(s) 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 1 cut(s) 288
Hsp92II CATG 1 cut(s) 38
HspAI GCGC 1 cut(s) 422
Kzo9I GATC 2 cut(s) 4, 43
LpnPI CCDG 7 cut(s) 44, 136, 236, 368, 432, 438, 507
LweI GCATC 1 cut(s) 130
MaeI CTAG 2 cut(s) 86, 219
MaeIII GTNAC 2 cut(s) 267, 396
MalI GATC 2 cut(s) 6, 45
MboI GATC 2 cut(s) 4, 43
MboII GAAGA 2 cut(s) 293, 518
MluCI AATT 6 cut(s) 123, 253, 309, 345, 391, 522
MmeI TCCRAC 1 cut(s) 507
MnlI CCTC 2 cut(s) 235, 421
MseI TTAA 5 cut(s) 48, 126, 182, 308, 312
MslI CAYNNNNRTG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 31
NdeII GATC 2 cut(s) 4, 43
NlaIII CATG 1 cut(s) 38
NmuCI GTSAC 1 cut(s) 396
PacI TTAATTAA 1 cut(s) 312
PfeI GAWTC 1 cut(s) 385
PspEI GGTNACC 1 cut(s) 396
PspFI CCCAGC 1 cut(s) 354
RsaI GTAC 1 cut(s) 470
RsaNI GTAC 1 cut(s) 469
RseI CAYNNNNRTG 1 cut(s) 110
SalI GTCGAC 1 cut(s) 375
SaqAI TTAA 5 cut(s) 48, 126, 182, 308, 312
Sau3AI GATC 2 cut(s) 4, 43
SetI ASST 7 cut(s) 133, 220, 246, 289, 403, 432, 479
SfaNI GCATC 1 cut(s) 130
SfcI CTRYAG 1 cut(s) 132
SmiMI CAYNNNNRTG 1 cut(s) 110
Sse9I AATT 6 cut(s) 123, 253, 309, 345, 391, 522
SsiI CCGC 1 cut(s) 410
SspI AATATT 2 cut(s) 208, 362
SspMI CTAG 2 cut(s) 86, 219
TaaI ACNGT 1 cut(s) 374
TaqI TCGA 2 cut(s) 376, 526
TasI AATT 6 cut(s) 123, 253, 309, 345, 391, 522
TatI WGTACW 1 cut(s) 468
TfiI GAWTC 1 cut(s) 385
Tru1I TTAA 5 cut(s) 48, 126, 182, 308, 312
Tru9I TTAA 5 cut(s) 48, 126, 182, 308, 312
TseFI GTSAC 1 cut(s) 396
Tsp45I GTSAC 1 cut(s) 396
TspDTI ATGAA 3 cut(s) 94, 377, 468
TspGWI ACGGA 1 cut(s) 286
XbaI TCTAGA 1 cut(s) 85
XcmI CCANNNNNNNNNTGG 1 cut(s) 259
XmiI GTMKAC 1 cut(s) 376
XspI CTAG 2 cut(s) 86, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.