Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0014703

Physical Location & Seq

Genomic Coordinates Reverse (-)

11299164 .. 11300466

Gene Structure 1303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1122600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGACATATCATCTTACAGAGCCTTTGAAGAGCTAAAGCTATTCCATTCAATCGATCGCACAATCTACGTTCGACTGCTGGGTTTACGTTTTGATCCTAACCTATCTAAGCTTGTCCTAGCATTTTGGTATTTTCTGGACACAGAAACTCACTACAAGTTTATGGCGGGCACGTTAGATTTGCATGACCGGGACTTGTATGCTTTAGCGTGTGAGTCGATTATGTGCTTACAGTATCTGTATTCAAATTACGCTCCTCCGGGGTCGGAGGAAATTGGTAGCAAGTTCCGAACACTGTGTCTTCTTCTTCTTACAAAAAAAATTCCACTCGAGTTTGTGTTTGAGAACAAGGAGAAGGCCCGGGAAGAGATGAAGAAAGTTATGGACAATGTCTTCGATAGAGCTTTATGGGATATAATTATAGTCCCACCATATCCATATTTGGGTCATATACCCAGTGGTTTCCTGCAAACCAATATGTTGAATGGTCCAATAATACAACAATGGTTTCAGCATAATTATTCACTTAATCAGCAGGGTCATAATATTGTTGAGGCTCAACCTTTATTGCCTCCCCAAGAAGCAAACGATGATGTGCCAGATCAGTATCAACCTAGTGTTGACAACAATGATAGAACTTTATTCTTGACATTCTCAAAGGGCCATCCTGTTTCAAAGGAAGAACTCAAAAGCTATTTAAACTGGAAATTTGGAGATTGTGTAGAGTCAATCTTTATGAAGAAGCCTGTTCATCCAAGTGAACAATCACTCTTTGCTCAAGTTGTTGCTAAGTCTGCGTCAGATGCTACCAGAATTCTTGATAAACCGGACCACGAGGGCAAAGTAAAATTCTCCGTTAATGGAAAAGATGTTAAAGCGAGGCGATCTAAGCCACGGACAGAACTAGTCACTAGACTCGAAGGGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

310

Amino Acids

35.78

Weight (kDa)

6.32

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014703)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33792
malus_domestica	MD03G1108800.v1.1 MD11G1122600.v1.1
prunus_persica	Prupe.3G138200_v2.0.a1 Prupe.6G092000_v2.0.a1
rosa_laevigata	RLG00000014218 RLG00000035462 RLG00000035472
rosa_multiflora	Rmu_co8089466.1_g000001 Rmu_sc0000338.1_g000001 Rmu_sc0000689.1_g000003
rosa_roxburghii	Rroxscaffold_1G00019350
rosa_rugosa	Rorug05G0339900
rosa_samantha	Rh5AG402100 Rh5BG414300 Rh5CG438900 Rh5DG428900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	167
AclWI	GGATC	1 cut(s)	89
AcsI	RAATTY	4 cut(s)	321, 707, 813, 848
AfiI	CCNNNNNNNGG	1 cut(s)	443
AgsI	TTSAA	5 cut(s)	29, 51, 246, 484, 675
AhlI	ACTAGT	1 cut(s)	904
AluBI	AGCT	5 cut(s)	34, 40, 112, 404, 693
AluI	AGCT	5 cut(s)	34, 40, 112, 404, 693
AlwI	GGATC	1 cut(s)	89
AlwNI	CAGNNNCTG	1 cut(s)	238
Ama87I	CYCGRG	2 cut(s)	329, 360
AoxI	GGCC	2 cut(s)	357, 661
ApoI	RAATTY	4 cut(s)	321, 707, 813, 848
ArsI	GACNNNNNNTTYG	4 cut(s)	283, 315, 377, 409
AspS9I	GGNCC	4 cut(s)	358, 488, 661, 829
AsuC2I	CCSGG	4 cut(s)	191, 261, 361, 362
AvaI	CYCGRG	2 cut(s)	329, 360
AvaII	GGWCC	2 cut(s)	488, 829
BaeGI	GKGCMC	1 cut(s)	173
BauI	CACGAG	1 cut(s)	833
BbsI	GAAGAC	2 cut(s)	293, 385
BccI	CCATC	1 cut(s)	672
BcnI	CCSGG	4 cut(s)	191, 261, 361, 362
BcuI	ACTAGT	1 cut(s)	904
BfaI	CTAG	5 cut(s)	119, 615, 905, 912, 928
Bme1390I	CCNGG	4 cut(s)	191, 261, 361, 362
Bme18I	GGWCC	2 cut(s)	488, 829
BmeT110I	CYCGRG	2 cut(s)	329, 360
BmgT120I	GGNCC	4 cut(s)	358, 488, 661, 829
BmrFI	CCNGG	4 cut(s)	191, 261, 361, 362
BmrI	ACTGGG	1 cut(s)	450
BmsI	GCATC	1 cut(s)	793
BmuI	ACTGGG	1 cut(s)	450
BpiI	GAAGAC	2 cut(s)	293, 385
BpuEI	CTTGAG	1 cut(s)	762
BpuMI	CCSGG	4 cut(s)	191, 261, 361, 362
Bsa29I	ATCGAT	1 cut(s)	54
BsaBI	GATNNNNATC	1 cut(s)	606
BsaJI	CCNNGG	3 cut(s)	260, 360, 893
BsaWI	WCCGGW	1 cut(s)	826
BsaXI	ACNNNNNCTCC	2 cut(s)	705, 735
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
Bse1I	ACTGG	2 cut(s)	456, 707
Bse8I	GATNNNNATC	1 cut(s)	606
BseCI	ATCGAT	1 cut(s)	54
BseDI	CCNNGG	3 cut(s)	260, 360, 893
BseGI	GGATG	2 cut(s)	664, 751
BseJI	GATNNNNATC	1 cut(s)	606
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseNI	ACTGG	2 cut(s)	456, 707
BseRI	GAGGAG	1 cut(s)	246
BseSI	GKGCMC	1 cut(s)	173
BseYI	CCCAGC	1 cut(s)	79
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	2 cut(s)	359, 663
BshVI	ATCGAT	1 cut(s)	54
BsiEI	CGRYCG	1 cut(s)	58
BsiHKCI	CYCGRG	2 cut(s)	329, 360
BsiSI	CCGG	4 cut(s)	190, 260, 361, 827
BslFI	GGGAC	2 cut(s)	206, 410
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmFI	GGGAC	2 cut(s)	206, 410
BsnI	GGCC	2 cut(s)	359, 663
BsoBI	CYCGRG	2 cut(s)	329, 360
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	4 cut(s)	55, 94, 601, 884
BspACI	CCGC	1 cut(s)	167
BspANI	GGCC	2 cut(s)	359, 663
BspDI	ATCGAT	1 cut(s)	54
BspPI	GGATC	1 cut(s)	89
BspQI	GCTCTTC	1 cut(s)	24
BsrI	ACTGG	2 cut(s)	456, 707
BssECI	CCNNGG	3 cut(s)	260, 360, 893
BssMI	GATC	4 cut(s)	55, 94, 601, 884
BssSI	CACGAG	1 cut(s)	833
Bst2BI	CACGAG	1 cut(s)	833
Bst4CI	ACNGT	2 cut(s)	234, 297
Bst6I	CTCTTC	2 cut(s)	24, 360
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	3 cut(s)	108, 789, 888
BstDSI	CCRYGG	1 cut(s)	893
BstF5I	GGATG	2 cut(s)	664, 751
BstKTI	GATC	4 cut(s)	58, 97, 604, 887
BstMBI	GATC	4 cut(s)	55, 94, 601, 884
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	3 cut(s)	794, 803, 889
BstSCI	CCNGG	4 cut(s)	189, 259, 359, 360
BstSLI	GKGCMC	1 cut(s)	173
BstV2I	GAAGAC	2 cut(s)	293, 385
Bsu15I	ATCGAT	1 cut(s)	54
BsuRI	GGCC	2 cut(s)	359, 663
BsuTUI	ATCGAT	1 cut(s)	54
BtgI	CCRYGG	1 cut(s)	893
BtsCI	GGATG	2 cut(s)	664, 751
BtsIMutI	CAGTG	2 cut(s)	293, 463
Cac8I	GCNNGC	1 cut(s)	169
CaiI	CAGNNNCTG	1 cut(s)	238
Cfr13I	GGNCC	4 cut(s)	358, 488, 661, 829
Cfr9I	CCCGGG	1 cut(s)	360
ClaI	ATCGAT	1 cut(s)	54
CseI	GACGC	1 cut(s)	786
CviAII	CATG	1 cut(s)	185
DdeI	CTNAG	3 cut(s)	108, 789, 888
DpnI	GATC	4 cut(s)	57, 96, 603, 886
DpnII	GATC	4 cut(s)	55, 94, 601, 884
DraI	TTTAAA	1 cut(s)	699
Eam1104I	CTCTTC	2 cut(s)	24, 360
EarI	CTCTTC	2 cut(s)	24, 360
Eco47I	GGWCC	2 cut(s)	488, 829
Eco88I	CYCGRG	2 cut(s)	329, 360
EcoRI	GAATTC	1 cut(s)	813
FaeI	CATG	1 cut(s)	188
FaqI	GGGAC	2 cut(s)	206, 410
FatI	CATG	1 cut(s)	184
FauI	CCCGC	1 cut(s)	160
FokI	GGATG	2 cut(s)	651, 738
FspBI	CTAG	5 cut(s)	119, 615, 905, 912, 928
GsaI	CCCAGC	1 cut(s)	83
HaeIII	GGCC	2 cut(s)	359, 663
HapII	CCGG	4 cut(s)	190, 260, 361, 827
HgaI	GACGC	1 cut(s)	786
Hin1II	CATG	1 cut(s)	188
HincII	GTYRAC	1 cut(s)	622
HindII	GTYRAC	1 cut(s)	622
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	3 cut(s)	215, 725, 915
HpaII	CCGG	4 cut(s)	190, 260, 361, 827
Hpy166II	GTNNAC	3 cut(s)	86, 622, 761
Hpy188I	TCNGA	3 cut(s)	268, 290, 802
Hpy188III	TCNNGA	3 cut(s)	137, 646, 818
Hpy8I	GTNNAC	3 cut(s)	86, 622, 761
HpyAV	CCTTC	2 cut(s)	349, 914
HpyCH4III	ACNGT	2 cut(s)	234, 297
HpyCH4IV	ACGT	3 cut(s)	69, 88, 173
HpyCH4V	TGCA	2 cut(s)	184, 469
HpyF10VI	GCNNNNNNNGC	3 cut(s)	794, 803, 889
HpyF3I	CTNAG	3 cut(s)	108, 789, 888
HpySE526I	ACGT	3 cut(s)	69, 88, 173
Hsp92II	CATG	1 cut(s)	188
Kzo9I	GATC	4 cut(s)	55, 94, 601, 884
LguI	GCTCTTC	1 cut(s)	24
LmnI	GCTCC	1 cut(s)	259
LweI	GCATC	1 cut(s)	793
MaeI	CTAG	5 cut(s)	119, 615, 905, 912, 928
MaeII	ACGT	3 cut(s)	69, 88, 173
MaeIII	GTNAC	1 cut(s)	907
MalI	GATC	4 cut(s)	57, 96, 603, 886
MboI	GATC	4 cut(s)	55, 94, 601, 884
MboII	GAAGA	9 cut(s)	41, 293, 296, 299, 377, 385, 385, 692, 751
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	8 cut(s)	247, 273, 321, 417, 517, 707, 813, 848
MlyI	GAGTC	3 cut(s)	224, 734, 909
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	6 cut(s)	262, 267, 547, 582, 829, 873
MseI	TTAA	4 cut(s)	528, 698, 858, 873
MslI	CAYNNNNRTG	1 cut(s)	756
MspI	CCGG	4 cut(s)	190, 260, 361, 827
MspR9I	CCNGG	4 cut(s)	191, 261, 361, 362
MwoI	GCNNNNNNNGC	3 cut(s)	794, 803, 889
NciI	CCSGG	4 cut(s)	191, 261, 361, 362
NdeII	GATC	4 cut(s)	55, 94, 601, 884
NlaIII	CATG	1 cut(s)	188
NmuCI	GTSAC	1 cut(s)	907
PaeR7I	CTCGAG	1 cut(s)	329
PciSI	GCTCTTC	1 cut(s)	24
PflFI	GACNNNGTC	1 cut(s)	389
Ple19I	CGATCG	1 cut(s)	58
PleI	GAGTC	3 cut(s)	223, 733, 909
PpsI	GAGTC	3 cut(s)	223, 733, 909
PspFI	CCCAGC	1 cut(s)	79
PspPI	GGNCC	4 cut(s)	358, 488, 661, 829
PspXI	VCTCGAGB	1 cut(s)	329
PstNI	CAGNNNCTG	1 cut(s)	238
PsyI	GACNNNGTC	1 cut(s)	389
PvuI	CGATCG	1 cut(s)	58
RseI	CAYNNNNRTG	1 cut(s)	756
SapI	GCTCTTC	1 cut(s)	24
SaqAI	TTAA	4 cut(s)	528, 698, 858, 873
Sau3AI	GATC	4 cut(s)	55, 94, 601, 884
Sau96I	GGNCC	4 cut(s)	358, 488, 661, 829
SchI	GAGTC	3 cut(s)	224, 734, 909
ScrFI	CCNGG	4 cut(s)	191, 261, 361, 362
SduI	GDGCHC	1 cut(s)	173
SfaNI	GCATC	1 cut(s)	793
Sfr274I	CTCGAG	1 cut(s)	329
SinI	GGWCC	2 cut(s)	488, 829
SlaI	CTCGAG	1 cut(s)	329
SmaI	CCCGGG	1 cut(s)	362
SmiMI	CAYNNNNRTG	1 cut(s)	756
SmlI	CTYRAG	2 cut(s)	329, 777
SmoI	CTYRAG	2 cut(s)	329, 777
SpeI	ACTAGT	1 cut(s)	904
Sse9I	AATT	8 cut(s)	247, 273, 321, 417, 517, 707, 813, 848
SsiI	CCGC	1 cut(s)	167
SspI	AATATT	1 cut(s)	547
SspMI	CTAG	5 cut(s)	119, 615, 905, 912, 928
StyD4I	CCNGG	4 cut(s)	189, 259, 359, 360
TaaI	ACNGT	2 cut(s)	234, 297
TaiI	ACGT	3 cut(s)	72, 91, 176
TaqI	TCGA	6 cut(s)	54, 73, 218, 330, 396, 918
TasI	AATT	8 cut(s)	247, 273, 321, 417, 517, 707, 813, 848
Tru1I	TTAA	4 cut(s)	528, 698, 858, 873
Tru9I	TTAA	4 cut(s)	528, 698, 858, 873
TscAI	CASTG	2 cut(s)	300, 463
TseFI	GTSAC	1 cut(s)	907
Tsp45I	GTSAC	1 cut(s)	907
TspDTI	ATGAA	3 cut(s)	386, 740, 752
TspGWI	ACGGA	2 cut(s)	844, 910
TspMI	CCCGGG	1 cut(s)	360
TspRI	CASTG	2 cut(s)	300, 463
Tth111I	GACNNNGTC	1 cut(s)	389
VpaK11BI	GGWCC	2 cut(s)	488, 829
XapI	RAATTY	4 cut(s)	321, 707, 813, 848
XhoI	CTCGAG	1 cut(s)	329
XmaI	CCCGGG	1 cut(s)	360
XspI	CTAG	5 cut(s)	119, 615, 905, 912, 928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.