RLG00000035462

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0014703
Physical Location & Seq
Forward (+)
67174513 .. 67176502
1990 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035462

Sequence Viewer

Length: 924 bp
ATGGCGGAGAAAATTAAACCTATAGGCGATGCAGAGTTCAGGGAGTTGGCAAACGAGACGCTTGCATGCTTAACTTATTTGATTACAGATTGTAATATTTCTCAACCTAGCCATTTCAAAAGGCTGTTTGAGGTTGTTCCCAATTTTGGGTTGGTGTTACGGAACAAAGAAGAAGCTAAGAAACAAATGGAATGGTTAATGAAGGAGATTTGTGAAAAAGCCTTTGGTGATATAATCCTCTCCCAGCAATATTGGTTGAATGGTCGACAAATGAATCATAATTGGTCACCTTTTGTCCCGCCAAATCCTGCGCCAGAGTTTGTCAATAATCAGTTGAATGAGGAAAAAAGAAGTTTGTACTTCACCTTCTCCAAAGACCACCCTGTCTCAATAGAAGAACTCCGAACCCTAATTCGACGATGGAAATTCGAAGATCGAGTAGAGAGGATTCACATGATGACTACACTTTCGGCTCGTGTTCTTTGTAAGTCTCCCACAGACGTTAGACAATTGTTGGTGAGGAGGAGGGCTGCACAGTCCACTTCTCAATCAATGCAAAAGATGTTAGGGCTGCTTCTACGTGGAATATTTTGCAAACTCTCCATCCCAAGTTTTATTGGCATTCTCTGCTTTGGTTTTCCCCCAGTGTTCCTAAATGAGCTTCATTTTGTGGCCATCAAGAGTAAGTTGAGTACTCTTGATAAGATTGCTGCTTATCTTCCTCATATAATTAAGTTTCTCGCTGTTTCACATTGCTTGGGAGACAATTGTCCTGATGGGTTGTTCGTGGTTCATCTACGTCGCTACTCGCTATGGGGTTGTGCACTTGTGCTTCTGATGCTTCTTTCCTATGAGCTCTCGGTTCGGTTTGGGGTCCGGGTGTCCAGATCTGTGGATGGCATCACGGGGCCTTACCTTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

308

Amino Acids

35.38

Weight (kDa)

9.2

Isoelectric Point (pI)

55.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 383
AccI GTMKAC 1 cut(s) 265
AciI CCGC 2 cut(s) 5, 299
AcoI YGGCCR 1 cut(s) 672
AcsI RAATTY 1 cut(s) 425
AfaI GTAC 2 cut(s) 359, 694
AfiI CCNNNNNNNGG 2 cut(s) 146, 147
AgsI TTSAA 3 cut(s) 118, 259, 337
AjuI GAANNNNNNNTTGG 2 cut(s) 207, 239
AluBI AGCT 3 cut(s) 176, 661, 856
AluI AGCT 3 cut(s) 176, 661, 856
Alw21I GWGCWC 2 cut(s) 826, 858
Alw26I GTCTC 4 cut(s) 50, 391, 495, 756
Alw44I GTGCAC 1 cut(s) 822
AoxI GGCC 2 cut(s) 672, 908
ApaLI GTGCAC 1 cut(s) 822
ApeKI GCWGC 3 cut(s) 530, 571, 710
ApoI RAATTY 1 cut(s) 425
ArsI GACNNNNNNTTYG 2 cut(s) 451, 483
AspLEI GCGC 1 cut(s) 313
AspS9I GGNCC 2 cut(s) 874, 908
AsuC2I CCSGG 1 cut(s) 878
AsuHPI GGTGA 4 cut(s) 239, 279, 355, 529
AsuII TTCGAA 1 cut(s) 429
AvaII GGWCC 1 cut(s) 874
BaeGI GKGCMC 1 cut(s) 826
BalI TGGCCA 1 cut(s) 674
BanII GRGCYC 1 cut(s) 858
BarI GAAGNNNNNNTAC 2 cut(s) 350, 382
BauI CACGAG 1 cut(s) 474
Bbv12I GWGCWC 2 cut(s) 826, 858
BbvI GCAGC 3 cut(s) 517, 558, 697
BccI CCATC 5 cut(s) 414, 611, 683, 770, 890
BcgI CGANNNNNNTGC 2 cut(s) 44, 78
BcnI CCSGG 1 cut(s) 878
BcoDI GTCTC 4 cut(s) 50, 391, 495, 756
BfaI CTAG 1 cut(s) 108
BfmI CTRYAG 1 cut(s) 21
BglII AGATCT 1 cut(s) 887
BisI GCNGC 3 cut(s) 531, 572, 711
BlsI GCNGC 3 cut(s) 532, 573, 712
BmcAI AGTACT 1 cut(s) 694
Bme1390I CCNGG 1 cut(s) 878
Bme18I GGWCC 1 cut(s) 874
BmgT120I GGNCC 2 cut(s) 874, 908
BmiI GGNNCC 2 cut(s) 875, 909
BmrFI CCNGG 1 cut(s) 878
BmrI ACTGGG 1 cut(s) 638
BmsI GCATC 3 cut(s) 19, 828, 909
BmuI ACTGGG 1 cut(s) 638
BoxI GACNNNNGTC 1 cut(s) 768
Bpu14I TTCGAA 1 cut(s) 429
BpuMI CCSGG 1 cut(s) 878
BsaAI YACGTR 1 cut(s) 581
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 147
Bse1I ACTGG 1 cut(s) 644
Bse3DI GCAATG 1 cut(s) 751
BseGI GGATG 2 cut(s) 603, 901
BseLI CCNNNNNNNGG 2 cut(s) 146, 147
BseMI GCAATG 1 cut(s) 751
BseNI ACTGG 1 cut(s) 644
BseRI GAGGAG 2 cut(s) 535, 538
BseSI GKGCMC 1 cut(s) 826
BseXI GCAGC 3 cut(s) 517, 558, 697
BseYI CCCAGC 1 cut(s) 243
BsgI GTGCAG 1 cut(s) 516
BshFI GGCC 2 cut(s) 674, 910
BsiHKAI GWGCWC 2 cut(s) 826, 858
BsiSI CCGG 1 cut(s) 877
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 2 cut(s) 146, 147
BsmAI GTCTC 4 cut(s) 50, 391, 495, 756
BsmBI CGTCTC 1 cut(s) 50
BsmFI GGGAC 1 cut(s) 281
BsmI GAATGC 1 cut(s) 621
BsnI GGCC 2 cut(s) 674, 910
Bsp119I TTCGAA 1 cut(s) 429
Bsp1286I GDGCHC 2 cut(s) 826, 858
Bsp143I GATC 2 cut(s) 433, 887
BspACI CCGC 2 cut(s) 5, 299
BspANI GGCC 2 cut(s) 674, 910
BspLI GGNNCC 2 cut(s) 875, 909
BspT104I TTCGAA 1 cut(s) 429
BsrDI GCAATG 1 cut(s) 751
BsrI ACTGG 1 cut(s) 644
BssMI GATC 2 cut(s) 433, 887
BssSI CACGAG 1 cut(s) 474
Bst2BI CACGAG 1 cut(s) 474
Bst4CI ACNGT 1 cut(s) 537
BstAPI GCANNNNNTGC 1 cut(s) 627
BstBAI YACGTR 1 cut(s) 581
BstBI TTCGAA 1 cut(s) 429
BstC8I GCNNGC 2 cut(s) 63, 67
BstDEI CTNAG 1 cut(s) 177
BstEII GGTNACC 1 cut(s) 285
BstF5I GGATG 2 cut(s) 603, 901
BstHHI GCGC 1 cut(s) 313
BstKTI GATC 2 cut(s) 436, 890
BstMAI GTCTC 4 cut(s) 50, 391, 495, 756
BstMBI GATC 2 cut(s) 433, 887
BstMWI GCNNNNNNNGC 2 cut(s) 627, 838
BstNSI RCATGY 1 cut(s) 69
BstPAI GACNNNNGTC 1 cut(s) 768
BstPI GGTNACC 1 cut(s) 285
BstSCI CCNGG 1 cut(s) 876
BstSFI CTRYAG 1 cut(s) 21
BstSLI GKGCMC 1 cut(s) 826
BstV1I GCAGC 3 cut(s) 517, 558, 697
BstX2I RGATCY 1 cut(s) 887
BstXI CCANNNNNNTGG 1 cut(s) 892
BstYI RGATCY 1 cut(s) 887
BsuRI GGCC 2 cut(s) 674, 910
BtgZI GCGATG 1 cut(s) 42
BtsCI GGATG 2 cut(s) 603, 901
BtsIMutI CAGTG 1 cut(s) 651
Cac8I GCNNGC 2 cut(s) 63, 67
CfoI GCGC 1 cut(s) 313
Cfr13I GGNCC 2 cut(s) 874, 908
CseI GACGC 1 cut(s) 67
Csp6I GTAC 2 cut(s) 358, 693
CviAII CATG 2 cut(s) 66, 454
CviQI GTAC 2 cut(s) 358, 693
DdeI CTNAG 1 cut(s) 177
DpnI GATC 2 cut(s) 435, 889
DpnII GATC 2 cut(s) 433, 887
DrdI GACNNNNNNGTC 1 cut(s) 383
DseDI GACNNNNNNGTC 1 cut(s) 383
EaeI YGGCCR 1 cut(s) 672
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 856
Eco24I GRGCYC 1 cut(s) 858
Eco47I GGWCC 1 cut(s) 874
Eco53kI GAGCTC 1 cut(s) 856
Eco91I GGTNACC 1 cut(s) 285
EcoICRI GAGCTC 1 cut(s) 856
EcoO109I RGGNCCY 1 cut(s) 908
EcoO65I GGTNACC 1 cut(s) 285
EcoT38I GRGCYC 1 cut(s) 858
Esp3I CGTCTC 1 cut(s) 50
FaeI CATG 2 cut(s) 69, 457
FaqI GGGAC 1 cut(s) 281
FatI CATG 2 cut(s) 65, 453
FauI CCCGC 1 cut(s) 306
FblI GTMKAC 1 cut(s) 265
Fnu4HI GCNGC 3 cut(s) 531, 572, 711
FokI GGATG 2 cut(s) 590, 908
FriOI GRGCYC 1 cut(s) 858
Fsp4HI GCNGC 3 cut(s) 531, 572, 711
FspBI CTAG 1 cut(s) 108
GlaI GCGC 1 cut(s) 312
GluI GCNGC 3 cut(s) 531, 572, 711
GsaI CCCAGC 1 cut(s) 247
HaeIII GGCC 2 cut(s) 674, 910
HapII CCGG 1 cut(s) 877
HgaI GACGC 1 cut(s) 67
HhaI GCGC 1 cut(s) 313
Hin1II CATG 2 cut(s) 69, 457
Hin6I GCGC 1 cut(s) 311
HinP1I GCGC 1 cut(s) 311
HincII GTYRAC 1 cut(s) 266
HindII GTYRAC 1 cut(s) 266
HinfI GANTC 2 cut(s) 274, 448
HpaII CCGG 1 cut(s) 877
HphI GGTGA 4 cut(s) 239, 279, 355, 529
Hpy166II GTNNAC 3 cut(s) 266, 540, 824
Hpy188I TCNGA 2 cut(s) 404, 837
Hpy188III TCNNGA 4 cut(s) 679, 698, 773, 885
Hpy8I GTNNAC 3 cut(s) 266, 540, 824
Hpy99I CGWCG 2 cut(s) 420, 804
HpyAV CCTTC 2 cut(s) 196, 376
HpyCH4III ACNGT 1 cut(s) 537
HpyCH4IV ACGT 3 cut(s) 501, 580, 799
HpyCH4V TGCA 6 cut(s) 32, 65, 533, 556, 594, 824
HpyF10VI GCNNNNNNNGC 2 cut(s) 627, 838
HpyF3I CTNAG 1 cut(s) 177
HpySE526I ACGT 3 cut(s) 501, 580, 799
Hsp92II CATG 2 cut(s) 69, 457
HspAI GCGC 1 cut(s) 311
Kzo9I GATC 2 cut(s) 433, 887
LpnPI CCDG 9 cut(s) 25, 257, 321, 327, 396, 657, 786, 890, 898
Lsp1109I GCAGC 3 cut(s) 517, 558, 697
LweI GCATC 3 cut(s) 19, 828, 909
MaeI CTAG 1 cut(s) 108
MaeII ACGT 3 cut(s) 501, 580, 799
MaeIII GTNAC 2 cut(s) 156, 285
MalI GATC 2 cut(s) 435, 889
MboI GATC 2 cut(s) 433, 887
MboII GAAGA 4 cut(s) 182, 407, 443, 710
MfeI CAATTG 2 cut(s) 509, 766
MflI RGATCY 1 cut(s) 887
MhlI GDGCHC 2 cut(s) 826, 858
MlsI TGGCCA 1 cut(s) 674
MluCI AATT 8 cut(s) 12, 142, 280, 411, 425, 509, 729, 766
MluNI TGGCCA 1 cut(s) 674
MnlI CCTC 8 cut(s) 124, 248, 334, 438, 513, 516, 519, 732
Mox20I TGGCCA 1 cut(s) 674
MscI TGGCCA 1 cut(s) 674
MseI TTAA 4 cut(s) 15, 71, 197, 732
Msp20I TGGCCA 1 cut(s) 674
MspI CCGG 1 cut(s) 877
MspR9I CCNGG 1 cut(s) 878
MunI CAATTG 2 cut(s) 509, 766
Mva1269I GAATGC 1 cut(s) 621
MwoI GCNNNNNNNGC 2 cut(s) 627, 838
NciI CCSGG 1 cut(s) 878
NdeII GATC 2 cut(s) 433, 887
NlaIII CATG 2 cut(s) 69, 457
NlaIV GGNNCC 2 cut(s) 875, 909
NmuCI GTSAC 1 cut(s) 285
NspI RCATGY 1 cut(s) 69
NspV TTCGAA 1 cut(s) 429
PaeI GCATGC 1 cut(s) 69
PctI GAATGC 1 cut(s) 621
PfeI GAWTC 2 cut(s) 274, 448
PkrI GCNGC 3 cut(s) 532, 573, 712
Ppu21I YACGTR 1 cut(s) 581
PshAI GACNNNNGTC 1 cut(s) 768
Psp124BI GAGCTC 1 cut(s) 858
PspEI GGTNACC 1 cut(s) 285
PspFI CCCAGC 1 cut(s) 243
PspN4I GGNNCC 2 cut(s) 875, 909
PspPI GGNCC 2 cut(s) 874, 908
PsuI RGATCY 1 cut(s) 887
RsaI GTAC 2 cut(s) 359, 694
RsaNI GTAC 2 cut(s) 358, 693
SacI GAGCTC 1 cut(s) 858
SalI GTCGAC 1 cut(s) 264
SaqAI TTAA 4 cut(s) 15, 71, 197, 732
SatI GCNGC 3 cut(s) 531, 572, 711
Sau3AI GATC 2 cut(s) 433, 887
Sau96I GGNCC 2 cut(s) 874, 908
ScaI AGTACT 1 cut(s) 694
ScrFI CCNGG 1 cut(s) 878
SduI GDGCHC 2 cut(s) 826, 858
SfaNI GCATC 3 cut(s) 19, 828, 909
SfcI CTRYAG 1 cut(s) 21
SfuI TTCGAA 1 cut(s) 429
SinI GGWCC 1 cut(s) 874
SphI GCATGC 1 cut(s) 69
Sse9I AATT 8 cut(s) 12, 142, 280, 411, 425, 509, 729, 766
SsiI CCGC 2 cut(s) 5, 299
SspI AATATT 3 cut(s) 97, 251, 588
SspMI CTAG 1 cut(s) 108
SstI GAGCTC 1 cut(s) 858
StyD4I CCNGG 1 cut(s) 876
TaaI ACNGT 1 cut(s) 537
TaiI ACGT 3 cut(s) 504, 583, 802
TaqI TCGA 4 cut(s) 265, 415, 429, 436
TasI AATT 8 cut(s) 12, 142, 280, 411, 425, 509, 729, 766
TatI WGTACW 2 cut(s) 357, 692
TfiI GAWTC 2 cut(s) 274, 448
Tru1I TTAA 4 cut(s) 15, 71, 197, 732
Tru9I TTAA 4 cut(s) 15, 71, 197, 732
TscAI CASTG 1 cut(s) 651
TseFI GTSAC 1 cut(s) 285
TseI GCWGC 3 cut(s) 530, 571, 710
Tsp45I GTSAC 1 cut(s) 285
TspDTI ATGAA 4 cut(s) 215, 287, 653, 782
TspGWI ACGGA 1 cut(s) 175
TspRI CASTG 1 cut(s) 651
VneI GTGCAC 1 cut(s) 822
VpaK11BI GGWCC 1 cut(s) 874
XapI RAATTY 1 cut(s) 425
XceI RCATGY 1 cut(s) 69
XcmI CCANNNNNNNNNTGG 1 cut(s) 148
XmiI GTMKAC 1 cut(s) 265
XspI CTAG 1 cut(s) 108
ZrmI AGTACT 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.