Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0014703

Physical Location & Seq

Genomic Coordinates Reverse (-)

6343129 .. 6345213

Gene Structure 2085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G092000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGAAATCTTCTGACAGAGCCCTTGAAGACCTTAAGCTTTTCCATACAATCGATCGCAACATATATTATCGACTCTTGATGGGGTTAGGTTTTGACCCTATCCTATCCAAGTATATCGTAGCCCTTTGGCACACGCTTGAAAGACAAAGTATTGGCCAGAAATTTATGATGAATACCTTACTTTTGCACGATCCATTCTTCAATGACTTGGCAAACGAATCTTTTGAGTTATTGAAACGTTTGTATTCAGATTGCGTTCATCCTCCGTTCGAGGACATCGATAGCCAGTTTCCGAAACTGCGTCTTCTTGTTCCCGTAAAAGTTTCACTAAGTTCTGTGTTTAACAACAAGGAAAACACCAAGAAAATCATGGAGGAATTTGTGAACGAAGTGTTGGAGAGAGCTTTTAGTGATATAGTTCCAATATATCCATATTTGGCTTTCATTCCACAACCTATTGTTTCCCAGCAACCCTTGTTGCATTTGATGAATGGTCTAATAGTGCAACAAGGGTTTCAAAATTCACTTAATTTGTGCGTTGATCCTAATGTTGTTGAGGCTCAACCTTCGTTGCCAGCCCAAGAAGCATGTGATGAAAGACCTGATCGGCACCAGCCTAATGCTGAAAGGAATGAAAGAACTTTGTTCTTGACCTTCTCAAGGGGCCATCCTGTTTCAGAAGAAGAACTCAGAGGCTTCTTTACAAGGAAATTTGGAGAGTGTATAGAAGCAATATGTATGGGAGCAGAGGAGGGAAATTCGCAGCCACTGTTTGCTCGTGCTGTTGTTAAATCTTCCTCAGATATCACAAAAATTCTTGTTGGCGTAGACGACAGCGGCAAAGCCAAATTCTCAATTCATGGGAAAGATGTTATCGTGAGACGCTTCTTTCCAAGACAAAACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

303

Amino Acids

34.63

Weight (kDa)

6.09

Isoelectric Point (pI)

48.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014703)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33792
malus_domestica	MD03G1108800.v1.1 MD11G1122600.v1.1
prunus_persica	Prupe.3G138200_v2.0.a1 Prupe.6G092000_v2.0.a1
rosa_laevigata	RLG00000014218 RLG00000035462 RLG00000035472
rosa_multiflora	Rmu_co8089466.1_g000001 Rmu_sc0000338.1_g000001 Rmu_sc0000689.1_g000003
rosa_roxburghii	Rroxscaffold_1G00019350
rosa_rugosa	Rorug05G0339900
rosa_samantha	Rh5AG402100 Rh5BG414300 Rh5CG438900 Rh5DG428900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	609
AccI	GTMKAC	1 cut(s)	828
AciI	CCGC	1 cut(s)	837
AclI	AACGTT	1 cut(s)	238
AclWI	GGATC	2 cut(s)	185, 536
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	7 cut(s)	161, 377, 520, 710, 757, 813, 848
AfiI	CCNNNNNNNGG	1 cut(s)	660
AflII	CTTAAG	1 cut(s)	32
AgsI	TTSAA	5 cut(s)	26, 140, 202, 235, 518
AjuI	GAANNNNNNNTTGG	2 cut(s)	377, 409
AluBI	AGCT	2 cut(s)	37, 404
AluI	AGCT	2 cut(s)	37, 404
Alw26I	GTCTC	1 cut(s)	874
AlwI	GGATC	2 cut(s)	185, 536
AlwNI	CAGNNNCTG	1 cut(s)	769
AoxI	GGCC	2 cut(s)	154, 664
ApeKI	GCWGC	1 cut(s)	763
ApoI	RAATTY	7 cut(s)	161, 377, 520, 710, 757, 813, 848
AspS9I	GGNCC	1 cut(s)	664
BalI	TGGCCA	1 cut(s)	156
BanI	GGYRCC	1 cut(s)	609
BanII	GRGCYC	1 cut(s)	22
BauI	CACGAG	1 cut(s)	777
BbsI	GAAGAC	2 cut(s)	33, 296
BbvI	GCAGC	1 cut(s)	775
BccI	CCATC	2 cut(s)	73, 675
BcoDI	GTCTC	1 cut(s)	874
BfrI	CTTAAG	1 cut(s)	32
BisI	GCNGC	2 cut(s)	764, 838
BlsI	GCNGC	2 cut(s)	765, 839
BmgT120I	GGNCC	1 cut(s)	664
BmiI	GGNNCC	2 cut(s)	611, 665
BpiI	GAAGAC	2 cut(s)	33, 296
BpuEI	CTTGAG	1 cut(s)	643
Bsa29I	ATCGAT	2 cut(s)	51, 279
Bsc4I	CCNNNNNNNGG	1 cut(s)	660
Bse1I	ACTGG	1 cut(s)	286
BseCI	ATCGAT	2 cut(s)	51, 279
BseGI	GGATG	2 cut(s)	259, 667
BseLI	CCNNNNNNNGG	1 cut(s)	660
BseMII	CTCAG	2 cut(s)	703, 813
BseNI	ACTGG	1 cut(s)	286
BseRI	GAGGAG	1 cut(s)	764
BseXI	GCAGC	1 cut(s)	775
BseYI	CCCAGC	1 cut(s)	465
Bsh1285I	CGRYCG	1 cut(s)	55
BshFI	GGCC	2 cut(s)	156, 666
BshNI	GGYRCC	1 cut(s)	609
BshVI	ATCGAT	2 cut(s)	51, 279
BsiEI	CGRYCG	1 cut(s)	55
BslI	CCNNNNNNNGG	1 cut(s)	660
BsmAI	GTCTC	1 cut(s)	874
BsmBI	CGTCTC	1 cut(s)	874
BsnI	GGCC	2 cut(s)	156, 666
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp143I	GATC	4 cut(s)	52, 190, 541, 604
BspACI	CCGC	1 cut(s)	837
BspANI	GGCC	2 cut(s)	156, 666
BspCNI	CTCAG	2 cut(s)	702, 812
BspDI	ATCGAT	2 cut(s)	51, 279
BspLI	GGNNCC	2 cut(s)	611, 665
BspPI	GGATC	2 cut(s)	185, 536
BspT107I	GGYRCC	1 cut(s)	609
BspTI	CTTAAG	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	286
BssMI	GATC	4 cut(s)	52, 190, 541, 604
BssSI	CACGAG	1 cut(s)	777
Bst2BI	CACGAG	1 cut(s)	777
Bst4CI	ACNGT	1 cut(s)	771
BstAFI	CTTAAG	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	576
BstDEI	CTNAG	3 cut(s)	329, 689, 799
BstENI	CCTNNNNNAGG	1 cut(s)	658
BstF5I	GGATG	2 cut(s)	259, 667
BstKTI	GATC	4 cut(s)	55, 193, 544, 607
BstMAI	GTCTC	1 cut(s)	874
BstMBI	GATC	4 cut(s)	52, 190, 541, 604
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	1 cut(s)	584
BstNSI	RCATGY	1 cut(s)	591
BstV1I	GCAGC	1 cut(s)	775
BstV2I	GAAGAC	2 cut(s)	33, 296
Bsu15I	ATCGAT	2 cut(s)	51, 279
BsuRI	GGCC	2 cut(s)	156, 666
BsuTUI	ATCGAT	2 cut(s)	51, 279
BtsCI	GGATG	2 cut(s)	259, 667
BtsIMutI	CAGTG	1 cut(s)	767
Cac8I	GCNNGC	1 cut(s)	576
CaiI	CAGNNNCTG	1 cut(s)	769
Cfr13I	GGNCC	1 cut(s)	664
ClaI	ATCGAT	2 cut(s)	51, 279
CseI	GACGC	2 cut(s)	290, 891
CviAII	CATG	3 cut(s)	370, 588, 860
DdeI	CTNAG	3 cut(s)	329, 689, 799
DpnI	GATC	4 cut(s)	54, 192, 543, 606
DpnII	GATC	4 cut(s)	52, 190, 541, 604
EaeI	YGGCCR	1 cut(s)	154
Eco24I	GRGCYC	1 cut(s)	22
Eco32I	GATATC	1 cut(s)	805
EcoNI	CCTNNNNNAGG	1 cut(s)	658
EcoRV	GATATC	1 cut(s)	805
EcoT38I	GRGCYC	1 cut(s)	22
Esp3I	CGTCTC	1 cut(s)	874
FaeI	CATG	3 cut(s)	373, 591, 863
FatI	CATG	3 cut(s)	369, 587, 859
FblI	GTMKAC	1 cut(s)	828
Fnu4HI	GCNGC	2 cut(s)	764, 838
FokI	GGATG	2 cut(s)	246, 654
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	2 cut(s)	764, 838
GluI	GCNGC	2 cut(s)	764, 838
GsaI	CCCAGC	1 cut(s)	469
HaeIII	GGCC	2 cut(s)	156, 666
HgaI	GACGC	2 cut(s)	290, 891
Hin1II	CATG	3 cut(s)	373, 591, 863
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	2 cut(s)	72, 218
Hpy166II	GTNNAC	2 cut(s)	385, 829
Hpy188I	TCNGA	6 cut(s)	13, 250, 294, 679, 692, 802
Hpy188III	TCNNGA	3 cut(s)	76, 649, 877
Hpy8I	GTNNAC	2 cut(s)	385, 829
HpyAV	CCTTC	2 cut(s)	576, 664
HpyCH4III	ACNGT	1 cut(s)	771
HpyCH4IV	ACGT	1 cut(s)	238
HpyCH4V	TGCA	3 cut(s)	187, 481, 505
HpyF10VI	GCNNNNNNNGC	1 cut(s)	584
HpyF3I	CTNAG	3 cut(s)	329, 689, 799
HpySE526I	ACGT	1 cut(s)	238
Hsp92II	CATG	3 cut(s)	373, 591, 863
Kzo9I	GATC	4 cut(s)	52, 190, 541, 604
LmnI	GCTCC	1 cut(s)	743
LpnPI	CCDG	7 cut(s)	170, 299, 479, 588, 615, 626, 684
Lsp1109I	GCAGC	1 cut(s)	775
MaeII	ACGT	1 cut(s)	238
MalI	GATC	4 cut(s)	54, 192, 543, 606
MboI	GATC	4 cut(s)	52, 190, 541, 604
MboII	GAAGA	6 cut(s)	38, 190, 296, 692, 695, 786
MhlI	GDGCHC	1 cut(s)	22
MlsI	TGGCCA	1 cut(s)	156
MluCI	AATT	9 cut(s)	161, 377, 520, 529, 710, 757, 813, 848, 855
MluNI	TGGCCA	1 cut(s)	156
MlyI	GAGTC	1 cut(s)	66
MmeI	TCCRAC	1 cut(s)	375
MnlI	CCTC	8 cut(s)	265, 273, 367, 550, 686, 742, 745, 808
Mox20I	TGGCCA	1 cut(s)	156
MscI	TGGCCA	1 cut(s)	156
MseI	TTAA	4 cut(s)	33, 342, 528, 789
Msp20I	TGGCCA	1 cut(s)	156
MspA1I	CMGCKG	1 cut(s)	837
MspCI	CTTAAG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	584
NdeII	GATC	4 cut(s)	52, 190, 541, 604
NlaIII	CATG	3 cut(s)	373, 591, 863
NlaIV	GGNNCC	2 cut(s)	611, 665
NspI	RCATGY	1 cut(s)	591
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	218
PkrI	GCNGC	2 cut(s)	765, 839
Ple19I	CGATCG	1 cut(s)	55
PleI	GAGTC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	66
Psp1406I	AACGTT	1 cut(s)	238
PspFI	CCCAGC	1 cut(s)	465
PspN4I	GGNNCC	2 cut(s)	611, 665
PspPI	GGNCC	1 cut(s)	664
PstNI	CAGNNNCTG	1 cut(s)	769
PvuI	CGATCG	1 cut(s)	55
SaqAI	TTAA	4 cut(s)	33, 342, 528, 789
SatI	GCNGC	2 cut(s)	764, 838
Sau3AI	GATC	4 cut(s)	52, 190, 541, 604
Sau96I	GGNCC	1 cut(s)	664
SchI	GAGTC	1 cut(s)	66
SduI	GDGCHC	1 cut(s)	22
SmlI	CTYRAG	2 cut(s)	32, 658
SmoI	CTYRAG	2 cut(s)	32, 658
Sse9I	AATT	9 cut(s)	161, 377, 520, 529, 710, 757, 813, 848, 855
SsiI	CCGC	1 cut(s)	837
TaaI	ACNGT	1 cut(s)	771
TaiI	ACGT	1 cut(s)	241
TaqI	TCGA	4 cut(s)	51, 70, 270, 279
TasI	AATT	9 cut(s)	161, 377, 520, 529, 710, 757, 813, 848, 855
TauI	GCSGC	1 cut(s)	840
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	4 cut(s)	33, 342, 528, 789
Tru9I	TTAA	4 cut(s)	33, 342, 528, 789
TscAI	CASTG	1 cut(s)	774
TseI	GCWGC	1 cut(s)	763
TspDTI	ATGAA	8 cut(s)	17, 185, 248, 433, 503, 609, 648, 848
TspGWI	ACGGA	1 cut(s)	255
TspRI	CASTG	1 cut(s)	774
Vha464I	CTTAAG	1 cut(s)	32
XagI	CCTNNNNNAGG	1 cut(s)	658
XapI	RAATTY	7 cut(s)	161, 377, 520, 710, 757, 813, 848
XceI	RCATGY	1 cut(s)	591
XcmI	CCANNNNNNNNNTGG	1 cut(s)	367
XmiI	GTMKAC	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.