Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000338.1

Orthogroup ID

OG0014703

Physical Location & Seq

Genomic Coordinates Reverse (-)

86 .. 808

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000338.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atggcagagaaaattaaacctataggcgatgcagagttcagggagttggcaaacgagacgcttgcgtgcttaacttatttgattacagattgtaatatttctcaacctagccagttcaaaaggctgtttgaggttgttcccaattttgggttggtgttacggaacaaagaagaagctaagaaacaaatggaatggttaattaaggagatttgtgaaaaagcctttggtgatataattctctcccagcaatattggttgaacggtcgacaagagattcataattggtcaccttttgtcccgccaaatcctgcgccagaggttgtcaataatcagttgaatgatgaaaaaagaagtttgtacttcaccttctccaacggccaccctgtctcaatagaagaactccgaaccctaattcgacgatggaatttcgaagatcgagtagagagaattaacatgatgactatcctttcggctcgtgttctttgtaagtctcccgcagacgttagacgaattgttggtgaggaggagggcagcacagtccacttctcaatcaatgcaaaagatgttagggtgaggcaatggctcccaaatgggaaaaaatgcttcaaagaggccgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

206

Amino Acids

23.95

Weight (kDa)

7.62

Isoelectric Point (pI)

60.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014703)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33792
malus_domestica	MD03G1108800.v1.1 MD11G1122600.v1.1
prunus_persica	Prupe.3G138200_v2.0.a1 Prupe.6G092000_v2.0.a1
rosa_laevigata	RLG00000014218 RLG00000035462 RLG00000035472
rosa_multiflora	Rmu_co8089466.1_g000001 Rmu_sc0000338.1_g000001 Rmu_sc0000689.1_g000003
rosa_roxburghii	Rroxscaffold_1G00019350
rosa_rugosa	Rorug05G0339900
rosa_samantha	Rh5AG402100 Rh5BG414300 Rh5CG438900 Rh5DG428900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	265
AciI	CCGC	3 cut(s)	299, 495, 615
AcoI	YGGCCR	1 cut(s)	376
AcsI	RAATTY	1 cut(s)	424
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	2 cut(s)	146, 147
AgsI	TTSAA	4 cut(s)	118, 259, 337, 607
AjuI	GAANNNNNNNTTGG	2 cut(s)	207, 239
AluBI	AGCT	1 cut(s)	176
AluI	AGCT	1 cut(s)	176
Alw26I	GTCTC	3 cut(s)	50, 391, 495
AoxI	GGCC	2 cut(s)	376, 612
ApeKI	GCWGC	1 cut(s)	531
ApoI	RAATTY	1 cut(s)	424
ArsI	GACNNNNNNTTYG	2 cut(s)	451, 483
AspLEI	GCGC	1 cut(s)	313
AsuHPI	GGTGA	5 cut(s)	239, 279, 355, 530, 583
AsuII	TTCGAA	1 cut(s)	429
BarI	GAAGNNNNNNTAC	2 cut(s)	350, 382
BauI	CACGAG	1 cut(s)	474
BbvI	GCAGC	1 cut(s)	543
BccI	CCATC	1 cut(s)	414
BceAI	ACGGC	1 cut(s)	391
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BcoDI	GTCTC	3 cut(s)	50, 391, 495
BfaI	CTAG	1 cut(s)	108
BfmI	CTRYAG	1 cut(s)	21
BisI	GCNGC	2 cut(s)	532, 615
BlsI	GCNGC	2 cut(s)	533, 616
BmiI	GGNNCC	1 cut(s)	584
BmsI	GCATC	1 cut(s)	19
Bpu14I	TTCGAA	1 cut(s)	429
BsaBI	GATNNNNATC	1 cut(s)	461
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 147
Bse1I	ACTGG	1 cut(s)	112
Bse3DI	GCAATG	1 cut(s)	584
Bse8I	GATNNNNATC	1 cut(s)	461
BseJI	GATNNNNATC	1 cut(s)	461
BseLI	CCNNNNNNNGG	2 cut(s)	146, 147
BseMI	GCAATG	1 cut(s)	584
BseNI	ACTGG	1 cut(s)	112
BseRI	GAGGAG	2 cut(s)	536, 539
BseXI	GCAGC	1 cut(s)	543
BseYI	CCCAGC	1 cut(s)	243
Bsh1285I	CGRYCG	1 cut(s)	265
BshFI	GGCC	2 cut(s)	378, 614
BsiEI	CGRYCG	1 cut(s)	265
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	2 cut(s)	146, 147
BsmAI	GTCTC	3 cut(s)	50, 391, 495
BsmBI	CGTCTC	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	2 cut(s)	378, 614
Bsp119I	TTCGAA	1 cut(s)	429
Bsp143I	GATC	1 cut(s)	433
BspACI	CCGC	3 cut(s)	299, 495, 615
BspANI	GGCC	2 cut(s)	378, 614
BspLI	GGNNCC	1 cut(s)	584
BspT104I	TTCGAA	1 cut(s)	429
BsrDI	GCAATG	1 cut(s)	584
BsrI	ACTGG	1 cut(s)	112
BssMI	GATC	1 cut(s)	433
BssSI	CACGAG	1 cut(s)	474
Bst2BI	CACGAG	1 cut(s)	474
Bst4CI	ACNGT	2 cut(s)	263, 538
BstBI	TTCGAA	1 cut(s)	429
BstC8I	GCNNGC	2 cut(s)	63, 67
BstDEI	CTNAG	1 cut(s)	177
BstEII	GGTNACC	1 cut(s)	285
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	1 cut(s)	436
BstMAI	GTCTC	3 cut(s)	50, 391, 495
BstMBI	GATC	1 cut(s)	433
BstMCI	CGRYCG	1 cut(s)	265
BstPI	GGTNACC	1 cut(s)	285
BstSFI	CTRYAG	1 cut(s)	21
BstV1I	GCAGC	1 cut(s)	543
BsuRI	GGCC	2 cut(s)	378, 614
BtgZI	GCGATG	1 cut(s)	42
Cac8I	GCNNGC	2 cut(s)	63, 67
CfoI	GCGC	1 cut(s)	313
CseI	GACGC	1 cut(s)	67
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	1 cut(s)	454
CviJI	RGCY	8 cut(s)	111, 124, 176, 221, 378, 473, 583, 614
CviKI_1	RGCY	8 cut(s)	111, 124, 176, 221, 378, 473, 583, 614
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	1 cut(s)	435
DpnII	GATC	1 cut(s)	433
EaeI	YGGCCR	1 cut(s)	376
Eco91I	GGTNACC	1 cut(s)	285
EcoO65I	GGTNACC	1 cut(s)	285
Esp3I	CGTCTC	1 cut(s)	50
FaeI	CATG	1 cut(s)	457
FaiI	YATR	4 cut(s)	23, 233, 279, 455
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	1 cut(s)	453
FauI	CCCGC	2 cut(s)	306, 502
FblI	GTMKAC	1 cut(s)	265
Fnu4HI	GCNGC	2 cut(s)	532, 615
Fsp4HI	GCNGC	2 cut(s)	532, 615
FspBI	CTAG	1 cut(s)	108
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	2 cut(s)	532, 615
GsaI	CCCAGC	1 cut(s)	247
HaeIII	GGCC	2 cut(s)	378, 614
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	1 cut(s)	313
Hin1II	CATG	1 cut(s)	457
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HincII	GTYRAC	1 cut(s)	266
HindII	GTYRAC	1 cut(s)	266
HinfI	GANTC	1 cut(s)	274
HphI	GGTGA	5 cut(s)	239, 279, 355, 530, 583
Hpy166II	GTNNAC	2 cut(s)	266, 541
Hpy188I	TCNGA	1 cut(s)	404
Hpy8I	GTNNAC	2 cut(s)	266, 541
Hpy99I	CGWCG	1 cut(s)	420
HpyAV	CCTTC	1 cut(s)	376
HpyCH4III	ACNGT	2 cut(s)	263, 538
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	2 cut(s)	32, 557
HpyF3I	CTNAG	1 cut(s)	177
HpySE526I	ACGT	1 cut(s)	501
Hsp92II	CATG	1 cut(s)	457
HspAI	GCGC	1 cut(s)	311
Kzo9I	GATC	1 cut(s)	433
LmnI	GCTCC	1 cut(s)	588
LpnPI	CCDG	6 cut(s)	25, 125, 257, 321, 327, 396
Lsp1109I	GCAGC	1 cut(s)	543
LweI	GCATC	1 cut(s)	19
MaeI	CTAG	1 cut(s)	108
MaeII	ACGT	1 cut(s)	501
MaeIII	GTNAC	2 cut(s)	156, 285
MalI	GATC	1 cut(s)	435
MboI	GATC	1 cut(s)	433
MboII	GAAGA	3 cut(s)	182, 407, 443
MluCI	AATT	9 cut(s)	12, 142, 198, 234, 280, 411, 424, 447, 510
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	7 cut(s)	124, 310, 514, 517, 520, 567, 604
MseI	TTAA	5 cut(s)	15, 71, 197, 201, 450
NdeII	GATC	1 cut(s)	433
NlaIII	CATG	1 cut(s)	457
NlaIV	GGNNCC	1 cut(s)	584
NmuCI	GTSAC	1 cut(s)	285
NspV	TTCGAA	1 cut(s)	429
PacI	TTAATTAA	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	274
PkrI	GCNGC	2 cut(s)	533, 616
PspEI	GGTNACC	1 cut(s)	285
PspFI	CCCAGC	1 cut(s)	243
PspN4I	GGNNCC	1 cut(s)	584
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
SalI	GTCGAC	1 cut(s)	264
SaqAI	TTAA	5 cut(s)	15, 71, 197, 201, 450
SatI	GCNGC	2 cut(s)	532, 615
Sau3AI	GATC	1 cut(s)	433
SetI	ASST	8 cut(s)	22, 109, 135, 178, 292, 321, 368, 504
SfaNI	GCATC	1 cut(s)	19
SfcI	CTRYAG	1 cut(s)	21
SfuI	TTCGAA	1 cut(s)	429
Sse9I	AATT	9 cut(s)	12, 142, 198, 234, 280, 411, 424, 447, 510
SsiI	CCGC	3 cut(s)	299, 495, 615
SspI	AATATT	2 cut(s)	97, 251
SspMI	CTAG	1 cut(s)	108
TaaI	ACNGT	2 cut(s)	263, 538
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	4 cut(s)	265, 415, 429, 436
TasI	AATT	9 cut(s)	12, 142, 198, 234, 280, 411, 424, 447, 510
TatI	WGTACW	1 cut(s)	357
TauI	GCSGC	1 cut(s)	617
TfiI	GAWTC	1 cut(s)	274
Tru1I	TTAA	5 cut(s)	15, 71, 197, 201, 450
Tru9I	TTAA	5 cut(s)	15, 71, 197, 201, 450
TseFI	GTSAC	1 cut(s)	285
TseI	GCWGC	1 cut(s)	531
Tsp45I	GTSAC	1 cut(s)	285
TspDTI	ATGAA	2 cut(s)	266, 357
TspGWI	ACGGA	1 cut(s)	175
XapI	RAATTY	1 cut(s)	424
XcmI	CCANNNNNNNNNTGG	1 cut(s)	148
XmiI	GTMKAC	1 cut(s)	265
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.