Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0014703

Physical Location & Seq

Genomic Coordinates Reverse (-)

23640229 .. 23641159

Gene Structure 931 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00019350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGAATTATGCGTCCCTAACGAACTTAAAGGGTTCCACTCCATGGATCGCAACATATATAGACGGCTTCTCCAGCACGGATTTGATCTTAATCACTCCAAGTCCATCGTAGCCTTTTGGTATTTTCTTGATAAAAAAAACCACTTCATATTTATGGCAGAGAAAATTAAACCTATAGGCGATGCAGAGTTCAGGGAATTGGCAAATGAGACGCTTGCGTGCTTAACTTATTTGATTACAGATTGTAATATTTCTCAACCTAGCCAGTTCAAAAGGCTGTTTGAGATTGTTCCCAATTTTGGGTTGGTGTTACGGAACAAAGAAGAAGCTAAGAAAAAAATGGAATGGTTAATGAAGGAGATTTGTGAAAAAGCCTTTGGTGATATAATCCTCTCCCAGCAATATTGGTTGAATGGTCGACAAGAGATTCATAATTGGTTACCTTTTGTCCCGCCAAATCCTGCGCCAGAGGTTGTCGATAATCAGTTGAATGAGGAAAAAAGAAGTTTGTACTTCACCTTCTCCCAAGGCCACCCTGTCTCAATAGAAGAACTCCGAACCCTAATTCGAAAATGGAATTTCGAAGATCGAGTAGAGAGAATTAACATGATGACTATCCTTTCGGCTCGTGTTCTTTGTAAGTCTCCCGCAGACGTTAGACGAATTGTTGGTGAGGAGGAGGGCCGCACAGTCCACTTCTCAATCAATGCAAAAGATGTTAGGGTGAGGCAATGGCTCCCAAATGGGAAAAAAATGCTTCAAAGAGGCCCCTTGATCTATTACGACCGCACCAACGGGCCTGTATTCAGGTGCAATAAACTTTGCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

276

Amino Acids

32.67

Weight (kDa)

9.11

Isoelectric Point (pI)

53.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014703)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33792
malus_domestica	MD03G1108800.v1.1 MD11G1122600.v1.1
prunus_persica	Prupe.3G138200_v2.0.a1 Prupe.6G092000_v2.0.a1
rosa_laevigata	RLG00000014218 RLG00000035462 RLG00000035472
rosa_multiflora	Rmu_co8089466.1_g000001 Rmu_sc0000338.1_g000001 Rmu_sc0000689.1_g000003
rosa_roxburghii	Rroxscaffold_1G00019350
rosa_rugosa	Rorug05G0339900
rosa_samantha	Rh5AG402100 Rh5BG414300 Rh5CG438900 Rh5DG428900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	816
Acc36I	ACCTGC	1 cut(s)	816
AccB7I	CCANNNNNTGG	1 cut(s)	43
AccI	GTMKAC	1 cut(s)	418
AciI	CCGC	4 cut(s)	452, 648, 685, 787
AclWI	GGATC	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	577
AfaI	GTAC	1 cut(s)	512
AfiI	CCNNNNNNNGG	3 cut(s)	43, 299, 300
AgsI	TTSAA	4 cut(s)	271, 412, 490, 761
AjuI	GAANNNNNNNTTGG	2 cut(s)	360, 392
AluBI	AGCT	1 cut(s)	329
AluI	AGCT	1 cut(s)	329
Alw26I	GTCTC	3 cut(s)	203, 544, 648
AlwI	GGATC	1 cut(s)	54
AoxI	GGCC	4 cut(s)	529, 682, 766, 797
ApoI	RAATTY	1 cut(s)	577
ArsI	GACNNNNNNTTYG	2 cut(s)	604, 636
AspLEI	GCGC	1 cut(s)	466
AspS9I	GGNCC	3 cut(s)	682, 767, 797
AsuHPI	GGTGA	4 cut(s)	392, 508, 683, 736
AsuII	TTCGAA	2 cut(s)	568, 582
BarI	GAAGNNNNNNTAC	2 cut(s)	503, 535
BauI	CACGAG	1 cut(s)	627
BccI	CCATC	1 cut(s)	113
BceAI	ACGGC	1 cut(s)	80
BcoDI	GTCTC	3 cut(s)	203, 544, 648
BfaI	CTAG	1 cut(s)	261
BfmI	CTRYAG	1 cut(s)	174
BfuAI	ACCTGC	1 cut(s)	816
BisI	GCNGC	1 cut(s)	685
BlsI	GCNGC	1 cut(s)	686
BmgT120I	GGNCC	3 cut(s)	682, 767, 797
BmiI	GGNNCC	3 cut(s)	35, 737, 769
BmsI	GCATC	1 cut(s)	172
BpmI	CTGGAG	1 cut(s)	56
Bpu14I	TTCGAA	2 cut(s)	568, 582
BsaBI	GATNNNNATC	2 cut(s)	90, 614
BsaJI	CCNNGG	2 cut(s)	42, 526
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 299, 300
Bse1I	ACTGG	1 cut(s)	265
Bse3DI	GCAATG	1 cut(s)	737
Bse8I	GATNNNNATC	2 cut(s)	90, 614
BseDI	CCNNGG	2 cut(s)	42, 526
BseJI	GATNNNNATC	2 cut(s)	90, 614
BseLI	CCNNNNNNNGG	3 cut(s)	43, 299, 300
BseMI	GCAATG	1 cut(s)	737
BseNI	ACTGG	1 cut(s)	265
BseRI	GAGGAG	2 cut(s)	689, 692
BseYI	CCCAGC	1 cut(s)	396
Bsh1285I	CGRYCG	1 cut(s)	787
BshFI	GGCC	4 cut(s)	531, 684, 768, 799
BsiEI	CGRYCG	1 cut(s)	787
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	3 cut(s)	43, 299, 300
BsmAI	GTCTC	3 cut(s)	203, 544, 648
BsmBI	CGTCTC	1 cut(s)	203
BsmFI	GGGAC	1 cut(s)	434
BsnI	GGCC	4 cut(s)	531, 684, 768, 799
Bsp119I	TTCGAA	2 cut(s)	568, 582
Bsp143I	GATC	4 cut(s)	46, 85, 586, 774
Bsp19I	CCATGG	1 cut(s)	42
BspACI	CCGC	4 cut(s)	452, 648, 685, 787
BspANI	GGCC	4 cut(s)	531, 684, 768, 799
BspLI	GGNNCC	3 cut(s)	35, 737, 769
BspMI	ACCTGC	1 cut(s)	816
BspPI	GGATC	1 cut(s)	54
BspT104I	TTCGAA	2 cut(s)	568, 582
BsrDI	GCAATG	1 cut(s)	737
BsrI	ACTGG	1 cut(s)	265
BssECI	CCNNGG	2 cut(s)	42, 526
BssMI	GATC	4 cut(s)	46, 85, 586, 774
BssSI	CACGAG	1 cut(s)	627
BssT1I	CCWWGG	2 cut(s)	42, 526
Bst2BI	CACGAG	1 cut(s)	627
Bst4CI	ACNGT	1 cut(s)	691
BstBI	TTCGAA	2 cut(s)	568, 582
BstC8I	GCNNGC	2 cut(s)	216, 220
BstDEI	CTNAG	1 cut(s)	330
BstDSI	CCRYGG	1 cut(s)	42
BstEII	GGTNACC	1 cut(s)	438
BstHHI	GCGC	1 cut(s)	466
BstKTI	GATC	4 cut(s)	49, 88, 589, 777
BstMAI	GTCTC	3 cut(s)	203, 544, 648
BstMBI	GATC	4 cut(s)	46, 85, 586, 774
BstMCI	CGRYCG	1 cut(s)	787
BstMWI	GCNNNNNNNGC	1 cut(s)	73
BstPI	GGTNACC	1 cut(s)	438
BstSFI	CTRYAG	1 cut(s)	174
BsuRI	GGCC	4 cut(s)	531, 684, 768, 799
BtgI	CCRYGG	1 cut(s)	42
BtgZI	GCGATG	1 cut(s)	195
BveI	ACCTGC	1 cut(s)	816
Cac8I	GCNNGC	2 cut(s)	216, 220
CfoI	GCGC	1 cut(s)	466
Cfr13I	GGNCC	3 cut(s)	682, 767, 797
CseI	GACGC	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	511
CviAII	CATG	2 cut(s)	43, 607
CviQI	GTAC	1 cut(s)	511
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	4 cut(s)	48, 87, 588, 776
DpnII	GATC	4 cut(s)	46, 85, 586, 774
Eco130I	CCWWGG	2 cut(s)	42, 526
Eco91I	GGTNACC	1 cut(s)	438
EcoO109I	RGGNCCY	1 cut(s)	767
EcoO65I	GGTNACC	1 cut(s)	438
EcoT14I	CCWWGG	2 cut(s)	42, 526
ErhI	CCWWGG	2 cut(s)	42, 526
Esp3I	CGTCTC	1 cut(s)	203
FaeI	CATG	2 cut(s)	46, 610
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	2 cut(s)	42, 606
FauI	CCCGC	2 cut(s)	459, 655
FblI	GTMKAC	1 cut(s)	418
Fnu4HI	GCNGC	1 cut(s)	685
Fsp4HI	GCNGC	1 cut(s)	685
FspBI	CTAG	1 cut(s)	261
GlaI	GCGC	1 cut(s)	465
GluI	GCNGC	1 cut(s)	685
GsaI	CCCAGC	1 cut(s)	400
GsuI	CTGGAG	1 cut(s)	56
HaeIII	GGCC	4 cut(s)	531, 684, 768, 799
HgaI	GACGC	1 cut(s)	220
HhaI	GCGC	1 cut(s)	466
Hin1II	CATG	2 cut(s)	46, 610
Hin6I	GCGC	1 cut(s)	464
HinP1I	GCGC	1 cut(s)	464
HincII	GTYRAC	1 cut(s)	419
HindII	GTYRAC	1 cut(s)	419
HinfI	GANTC	1 cut(s)	427
HphI	GGTGA	4 cut(s)	392, 508, 683, 736
Hpy166II	GTNNAC	2 cut(s)	419, 694
Hpy188I	TCNGA	1 cut(s)	557
Hpy188III	TCNNGA	1 cut(s)	128
Hpy8I	GTNNAC	2 cut(s)	419, 694
HpyAV	CCTTC	2 cut(s)	349, 529
HpyCH4III	ACNGT	1 cut(s)	691
HpyCH4IV	ACGT	1 cut(s)	654
HpyCH4V	TGCA	4 cut(s)	185, 710, 813, 825
HpyF10VI	GCNNNNNNNGC	1 cut(s)	73
HpyF3I	CTNAG	1 cut(s)	330
HpySE526I	ACGT	1 cut(s)	654
Hsp92II	CATG	2 cut(s)	46, 610
HspAI	GCGC	1 cut(s)	464
Kzo9I	GATC	4 cut(s)	46, 85, 586, 774
LmnI	GCTCC	1 cut(s)	741
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	1 cut(s)	654
MaeIII	GTNAC	2 cut(s)	309, 438
MalI	GATC	4 cut(s)	48, 87, 588, 776
MboI	GATC	4 cut(s)	46, 85, 586, 774
MboII	GAAGA	3 cut(s)	335, 560, 596
MluCI	AATT	9 cut(s)	5, 165, 197, 295, 433, 564, 577, 600, 663
MnlI	CCTC	8 cut(s)	401, 463, 487, 667, 670, 673, 720, 758
MseI	TTAA	6 cut(s)	27, 90, 168, 224, 350, 603
MslI	CAYNNNNRTG	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	73
NcoI	CCATGG	1 cut(s)	42
NdeII	GATC	4 cut(s)	46, 85, 586, 774
NlaIII	CATG	2 cut(s)	46, 610
NlaIV	GGNNCC	3 cut(s)	35, 737, 769
NspV	TTCGAA	2 cut(s)	568, 582
PaqCI	CACCTGC	1 cut(s)	816
PfeI	GAWTC	1 cut(s)	427
PflMI	CCANNNNNTGG	1 cut(s)	43
PkrI	GCNGC	1 cut(s)	686
PspEI	GGTNACC	1 cut(s)	438
PspFI	CCCAGC	1 cut(s)	396
PspN4I	GGNNCC	3 cut(s)	35, 737, 769
PspPI	GGNCC	3 cut(s)	682, 767, 797
RsaI	GTAC	1 cut(s)	512
RsaNI	GTAC	1 cut(s)	511
RseI	CAYNNNNRTG	1 cut(s)	152
SalI	GTCGAC	1 cut(s)	417
SaqAI	TTAA	6 cut(s)	27, 90, 168, 224, 350, 603
SatI	GCNGC	1 cut(s)	685
Sau3AI	GATC	4 cut(s)	46, 85, 586, 774
Sau96I	GGNCC	3 cut(s)	682, 767, 797
SetI	ASST	9 cut(s)	175, 262, 331, 445, 474, 521, 657, 812, 830
SfaNI	GCATC	1 cut(s)	172
SfcI	CTRYAG	1 cut(s)	174
SfuI	TTCGAA	2 cut(s)	568, 582
SmiMI	CAYNNNNRTG	1 cut(s)	152
Sse9I	AATT	9 cut(s)	5, 165, 197, 295, 433, 564, 577, 600, 663
SsiI	CCGC	4 cut(s)	452, 648, 685, 787
SspI	AATATT	2 cut(s)	250, 404
SspMI	CTAG	1 cut(s)	261
StyI	CCWWGG	2 cut(s)	42, 526
TaaI	ACNGT	1 cut(s)	691
TaiI	ACGT	1 cut(s)	657
TaqI	TCGA	5 cut(s)	418, 477, 568, 582, 589
TasI	AATT	9 cut(s)	5, 165, 197, 295, 433, 564, 577, 600, 663
TatI	WGTACW	1 cut(s)	510
TauI	GCSGC	1 cut(s)	687
TfiI	GAWTC	1 cut(s)	427
Tru1I	TTAA	6 cut(s)	27, 90, 168, 224, 350, 603
Tru9I	TTAA	6 cut(s)	27, 90, 168, 224, 350, 603
TspDTI	ATGAA	3 cut(s)	136, 368, 419
TspGWI	ACGGA	2 cut(s)	93, 328
Van91I	CCANNNNNTGG	1 cut(s)	43
XapI	RAATTY	1 cut(s)	577
XcmI	CCANNNNNNNNNTGG	1 cut(s)	301
XmiI	GTMKAC	1 cut(s)	418
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.