Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0014703

Physical Location & Seq

Genomic Coordinates Forward (+)

69597982 .. 69598710

Gene Structure 729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG402100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCAGAGAAAATTAAACCTATAGGCGATGCAGAGTTCAGGGAGTTGGCAAACGAGACGCTTGCGTGCTTAACTTATTTGATTACAGATTGTAATATTTCTCAACCTATCCAGTTCAAAAGGCTGTTTGAGGTTGTTCCCAATTTTGGGTTGGTGTTACGGAACAAAGAAGAAGCTAAGAAACAAATGGAATGGTTAATTAAGGAGATTTGTGAAAAAGCCTTTGGTGATATAATTCTCTCCCAGCAATATTGGTTGAACGGTCGACAAGAGATTCATAATTGGTCACCTTTTGTCCCGCCAAATCCTGCGCCAGAGGTTGTCAATAATCAGTTGAATGAGGAAAAAAGAAGTTTGTACTTCACCTTCTCCAACGGCCACCCTGTCTCAATAGAAGAACTCCGAACCCTAATTCGACGATGGAATTTCGAAGATCGAGTAGAGAGAATTGACATGATGACTATCCTTTCGGCTCGTGTTCTTTGTAAGTCTCCCGCAGACGTTAGACGAATTGTTGGTGAGGAGCTGGAGGGCCGCACAGTCCACTTCTCAATCAATGCAAAAGATGTTAGGGTGAGGCAATGGCTCCCAAATGGGAAAAAATGCTTCAAAGAGACCGCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

24.37

Weight (kDa)

7.62

Isoelectric Point (pI)

58.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014703)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33792
malus_domestica	MD03G1108800.v1.1 MD11G1122600.v1.1
prunus_persica	Prupe.3G138200_v2.0.a1 Prupe.6G092000_v2.0.a1
rosa_laevigata	RLG00000014218 RLG00000035462 RLG00000035472
rosa_multiflora	Rmu_co8089466.1_g000001 Rmu_sc0000338.1_g000001 Rmu_sc0000689.1_g000003
rosa_roxburghii	Rroxscaffold_1G00019350
rosa_rugosa	Rorug05G0339900
rosa_samantha	Rh5AG402100 Rh5BG414300 Rh5CG438900 Rh5DG428900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	265
AciI	CCGC	4 cut(s)	299, 495, 535, 618
AcoI	YGGCCR	1 cut(s)	376
AcsI	RAATTY	1 cut(s)	424
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	2 cut(s)	146, 147
AgsI	TTSAA	4 cut(s)	118, 259, 337, 610
AjuI	GAANNNNNNNTTGG	2 cut(s)	207, 239
AluBI	AGCT	2 cut(s)	176, 526
AluI	AGCT	2 cut(s)	176, 526
Alw26I	GTCTC	4 cut(s)	50, 391, 495, 608
AoxI	GGCC	2 cut(s)	376, 532
ApoI	RAATTY	1 cut(s)	424
ArsI	GACNNNNNNTTYG	2 cut(s)	451, 483
AspLEI	GCGC	1 cut(s)	313
AspS9I	GGNCC	1 cut(s)	532
AsuHPI	GGTGA	5 cut(s)	239, 279, 355, 530, 586
AsuII	TTCGAA	1 cut(s)	429
BarI	GAAGNNNNNNTAC	2 cut(s)	350, 382
BauI	CACGAG	1 cut(s)	474
BccI	CCATC	1 cut(s)	414
BceAI	ACGGC	1 cut(s)	391
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BcoDI	GTCTC	4 cut(s)	50, 391, 495, 608
BfmI	CTRYAG	1 cut(s)	21
BisI	GCNGC	1 cut(s)	535
BlsI	GCNGC	1 cut(s)	536
BmgT120I	GGNCC	1 cut(s)	532
BmiI	GGNNCC	1 cut(s)	587
BmsI	GCATC	1 cut(s)	19
BpmI	CTGGAG	1 cut(s)	548
Bpu14I	TTCGAA	1 cut(s)	429
BsaBI	GATNNNNATC	1 cut(s)	461
BsaI	GGTCTC	1 cut(s)	608
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 147
Bse1I	ACTGG	1 cut(s)	112
Bse3DI	GCAATG	1 cut(s)	587
Bse8I	GATNNNNATC	1 cut(s)	461
BseJI	GATNNNNATC	1 cut(s)	461
BseLI	CCNNNNNNNGG	2 cut(s)	146, 147
BseMI	GCAATG	1 cut(s)	587
BseNI	ACTGG	1 cut(s)	112
BseRI	GAGGAG	1 cut(s)	536
BseYI	CCCAGC	1 cut(s)	243
Bsh1285I	CGRYCG	1 cut(s)	265
BshFI	GGCC	2 cut(s)	378, 534
BsiEI	CGRYCG	1 cut(s)	265
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	2 cut(s)	146, 147
BsmAI	GTCTC	4 cut(s)	50, 391, 495, 608
BsmBI	CGTCTC	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	2 cut(s)	378, 534
Bso31I	GGTCTC	1 cut(s)	608
Bsp119I	TTCGAA	1 cut(s)	429
Bsp143I	GATC	1 cut(s)	433
BspACI	CCGC	4 cut(s)	299, 495, 535, 618
BspANI	GGCC	2 cut(s)	378, 534
BspLI	GGNNCC	1 cut(s)	587
BspT104I	TTCGAA	1 cut(s)	429
BspTNI	GGTCTC	1 cut(s)	608
BsrDI	GCAATG	1 cut(s)	587
BsrI	ACTGG	1 cut(s)	112
BssMI	GATC	1 cut(s)	433
BssSI	CACGAG	1 cut(s)	474
Bst2BI	CACGAG	1 cut(s)	474
Bst4CI	ACNGT	2 cut(s)	263, 541
BstBI	TTCGAA	1 cut(s)	429
BstC8I	GCNNGC	2 cut(s)	63, 67
BstDEI	CTNAG	1 cut(s)	177
BstEII	GGTNACC	1 cut(s)	285
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	1 cut(s)	436
BstMAI	GTCTC	4 cut(s)	50, 391, 495, 608
BstMBI	GATC	1 cut(s)	433
BstMCI	CGRYCG	1 cut(s)	265
BstPI	GGTNACC	1 cut(s)	285
BstSFI	CTRYAG	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	378, 534
BtgZI	GCGATG	1 cut(s)	42
Cac8I	GCNNGC	2 cut(s)	63, 67
CfoI	GCGC	1 cut(s)	313
Cfr13I	GGNCC	1 cut(s)	532
CseI	GACGC	1 cut(s)	67
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	1 cut(s)	454
CviJI	RGCY	8 cut(s)	124, 176, 221, 378, 473, 526, 534, 586
CviKI_1	RGCY	8 cut(s)	124, 176, 221, 378, 473, 526, 534, 586
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	1 cut(s)	435
DpnII	GATC	1 cut(s)	433
EaeI	YGGCCR	1 cut(s)	376
Eco31I	GGTCTC	1 cut(s)	608
Eco91I	GGTNACC	1 cut(s)	285
EcoO65I	GGTNACC	1 cut(s)	285
Esp3I	CGTCTC	1 cut(s)	50
FaeI	CATG	1 cut(s)	457
FaiI	YATR	4 cut(s)	23, 233, 279, 455
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	1 cut(s)	453
FauI	CCCGC	2 cut(s)	306, 502
FblI	GTMKAC	1 cut(s)	265
Fnu4HI	GCNGC	1 cut(s)	535
Fsp4HI	GCNGC	1 cut(s)	535
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	1 cut(s)	535
GsaI	CCCAGC	1 cut(s)	247
GsuI	CTGGAG	1 cut(s)	548
HaeIII	GGCC	2 cut(s)	378, 534
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	1 cut(s)	313
Hin1II	CATG	1 cut(s)	457
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HincII	GTYRAC	1 cut(s)	266
HindII	GTYRAC	1 cut(s)	266
HinfI	GANTC	1 cut(s)	274
HphI	GGTGA	5 cut(s)	239, 279, 355, 530, 586
Hpy166II	GTNNAC	2 cut(s)	266, 544
Hpy188I	TCNGA	1 cut(s)	404
Hpy8I	GTNNAC	2 cut(s)	266, 544
Hpy99I	CGWCG	1 cut(s)	420
HpyAV	CCTTC	1 cut(s)	376
HpyCH4III	ACNGT	2 cut(s)	263, 541
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	2 cut(s)	32, 560
HpyF3I	CTNAG	1 cut(s)	177
HpySE526I	ACGT	1 cut(s)	501
Hsp92II	CATG	1 cut(s)	457
HspAI	GCGC	1 cut(s)	311
Kzo9I	GATC	1 cut(s)	433
LmnI	GCTCC	2 cut(s)	523, 591
LpnPI	CCDG	7 cut(s)	25, 125, 257, 321, 327, 396, 512
LweI	GCATC	1 cut(s)	19
MaeII	ACGT	1 cut(s)	501
MaeIII	GTNAC	2 cut(s)	156, 285
MalI	GATC	1 cut(s)	435
MboI	GATC	1 cut(s)	433
MboII	GAAGA	3 cut(s)	182, 407, 443
MluCI	AATT	9 cut(s)	12, 142, 198, 234, 280, 411, 424, 447, 510
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	6 cut(s)	124, 310, 334, 514, 523, 570
MseI	TTAA	4 cut(s)	15, 71, 197, 201
NdeII	GATC	1 cut(s)	433
NlaIII	CATG	1 cut(s)	457
NlaIV	GGNNCC	1 cut(s)	587
NmuCI	GTSAC	1 cut(s)	285
NspV	TTCGAA	1 cut(s)	429
PacI	TTAATTAA	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	274
PkrI	GCNGC	1 cut(s)	536
PspEI	GGTNACC	1 cut(s)	285
PspFI	CCCAGC	1 cut(s)	243
PspN4I	GGNNCC	1 cut(s)	587
PspPI	GGNCC	1 cut(s)	532
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
SalI	GTCGAC	1 cut(s)	264
SaqAI	TTAA	4 cut(s)	15, 71, 197, 201
SatI	GCNGC	1 cut(s)	535
Sau3AI	GATC	1 cut(s)	433
Sau96I	GGNCC	1 cut(s)	532
SetI	ASST	9 cut(s)	22, 109, 135, 178, 292, 321, 368, 504, 528
SfaNI	GCATC	1 cut(s)	19
SfcI	CTRYAG	1 cut(s)	21
SfuI	TTCGAA	1 cut(s)	429
Sse9I	AATT	9 cut(s)	12, 142, 198, 234, 280, 411, 424, 447, 510
SsiI	CCGC	4 cut(s)	299, 495, 535, 618
SspI	AATATT	2 cut(s)	97, 251
TaaI	ACNGT	2 cut(s)	263, 541
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	4 cut(s)	265, 415, 429, 436
TasI	AATT	9 cut(s)	12, 142, 198, 234, 280, 411, 424, 447, 510
TatI	WGTACW	1 cut(s)	357
TauI	GCSGC	1 cut(s)	537
TfiI	GAWTC	1 cut(s)	274
Tru1I	TTAA	4 cut(s)	15, 71, 197, 201
Tru9I	TTAA	4 cut(s)	15, 71, 197, 201
TseFI	GTSAC	1 cut(s)	285
Tsp45I	GTSAC	1 cut(s)	285
TspDTI	ATGAA	1 cut(s)	266
TspGWI	ACGGA	1 cut(s)	175
XapI	RAATTY	1 cut(s)	424
XcmI	CCANNNNNNNNNTGG	1 cut(s)	148
XmiI	GTMKAC	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.