FvH4_3g36500

Belongs to the OSBP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0009849
Physical Location & Seq
Forward (+)
31259325 .. 31264676
5352 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36500.t1

Sequence Viewer

Length: 1377 bp
ATGAGTGGCCCAAGCAAGGATGAGAAGAGCGAGGGGGGCTTCTTCGCCGCCATGACTTCCGGCCTCTCCGTCTTCGGCAACGCCATGCACCGATCCGTTGGCGGGATGCTTGGTCATGAAGGGGTGGAAGTTATAAATCCAGATGGAGGCAAAGAAGATGCAGAGGAGGAAGCTCACCGAGGAAGATGGAAGCAGGAGGAACGAGACAGTTACTGGAAGATGATGCAAAAGTATATAGGTTCAGATATAACATCAATGGTGACTCTTCCTGTGTATATCTTTGAGCCAATGACAATGCTGCAGAAAATGGCAGAGCTGATGGAATATTCACACTTGTTGGATCTCGCTGATGAATGCGAAGATCCTTATTTGCGGTTGGTGTACGCCACATCATGGGCCATCTCTGTCTACTATGCCTACCAGCGAACATGGAAACCCTTTAATCCTATACTTGGGGAGACTTATGAGATGGTTAATCATGGTGGGATTACATTTGTTGCAGAGCAGGTCAGTCATCATCCACCTATGAGTGCTGCTCATGGTGAAAATGAACATTTCACTTATGATGTGACGTCAAAGCTGAAAACTAAATTTCTAGGGAACTCTCTTGATGTTTACCCAGTTGGAAGAACACGAGTGGCGCTTAAGAGAGATGGTGTAGTCTTAGATTTAGTGCCACCTCCCACAAAAGTAAACAACTTGATATTCGGAAGGACTTGGGTTGATTCACCTGGAGACATGATAATGACGAATCTGACAACTGGGGATAAAGCTGTGCTATATTTCCAGCCCTGTGGCTGGTTTGGAGCTGGCCGTTATGAAGTGGATGGATATGTTTATAATGCTGCTGAGGAACCTAAGATGTTGATGACTGGGAAATGGAACGAATCCATGAATTATCAACCATGTGACATGGAAGGGGAACCTCTTCCAGGAACAGAATTAAAAGAGGTTTGGCATCTTGCTGATATTCCGGAGAATGACAAATTTCAGTACACATACTTTGCACATAAAATAAATAGTTTTGACAGTGCTCCTAAAAATTTTTTGGCATCGGACTCGCGTTTGCGCCCTGATAGATACGCACTTGAGAACGGCGATCTATCCAAATCAGGTGCAGAGAAGAGCAGATTGGAGGAGAGGCAGAGAGCTGAAAAGAGAGAACGAGAAGCCAAGGAACAAAAGTTTACACCAAGATGGTTCGAGTTAACTGAGGAGGTAACACCTACACCGTGGGGTGACTTGGAAGTCTATCAGTATAACAATAAATACACTCAACACCGTGCTGCAATTGATAGCTCTGACTCTGTTGATGTGGTTGATGTGAAATCAATTGAGTTCAACCCATGGCAGTATGGCAATGTGTCCGCAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oxysterol_BP

Protein Analysis

459

Amino Acids

52.26

Weight (kDa)

5.02

Isoelectric Point (pI)

35.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxysterol_BP PF01237 70 - 428 3.3e-112 Oxysterol-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 134, 840
AasI GACNNNNNNGTC 1 cut(s) 1247
AatII GACGTC 1 cut(s) 575
Acc36I ACCTGC 1 cut(s) 496
AccB7I CCANNNNNTGG 1 cut(s) 393
AccI GTMKAC 1 cut(s) 408
AccII CGCG 1 cut(s) 1063
AccIII TCCGGA 1 cut(s) 973
AciI CCGC 4 cut(s) 48, 102, 373, 1368
AclWI GGATC 3 cut(s) 87, 348, 356
AcoI YGGCCR 1 cut(s) 811
AcsI RAATTY 3 cut(s) 590, 986, 1042
AcyI GRCGYC 1 cut(s) 572
AfaI GTAC 2 cut(s) 383, 995
AfiI CCNNNNNNNGG 7 cut(s) 16, 102, 146, 393, 452, 798, 932
AflII CTTAAG 1 cut(s) 644
AgsI TTSAA 1 cut(s) 1342
AjnI CCWGG 2 cut(s) 730, 931
AjuI GAANNNNNNNTTGG 2 cut(s) 1115, 1147
AluBI AGCT 7 cut(s) 173, 316, 580, 773, 809, 1151, 1299
AluI AGCT 7 cut(s) 173, 316, 580, 773, 809, 1151, 1299
Alw21I GWGCWC 1 cut(s) 1036
Alw26I GTCTC 3 cut(s) 198, 452, 729
AlwI GGATC 3 cut(s) 87, 348, 356
AlwNI CAGNNNCTG 1 cut(s) 213
Aor13HI TCCGGA 1 cut(s) 973
AoxI GGCC 4 cut(s) 7, 61, 396, 811
ApeKI GCWGC 4 cut(s) 298, 533, 845, 1286
ApoI RAATTY 3 cut(s) 590, 986, 1042
Asp700I GAANNNNTTC 1 cut(s) 927
AspLEI GCGC 2 cut(s) 643, 1071
AspS9I GGNCC 2 cut(s) 8, 396
AsuHPI GGTGA 5 cut(s) 167, 271, 554, 720, 1250
BauI CACGAG 1 cut(s) 633
BbsI GAAGAC 1 cut(s) 64
Bbv12I GWGCWC 1 cut(s) 1036
BbvCI CCTCAGC 1 cut(s) 849
BbvI GCAGC 4 cut(s) 285, 520, 832, 1273
BccI CCATC 8 cut(s) 137, 180, 313, 407, 463, 647, 821, 1191
BceAI ACGGC 2 cut(s) 798, 1111
BcgI CGANNNNNNTGC 2 cut(s) 1041, 1075
BciT130I CCWGG 2 cut(s) 732, 933
BcoDI GTCTC 3 cut(s) 198, 452, 729
BfaI CTAG 1 cut(s) 596
BfmI CTRYAG 1 cut(s) 299
BfoI RGCGCY 1 cut(s) 644
BfrI CTTAAG 1 cut(s) 644
BfuAI ACCTGC 1 cut(s) 496
BisI GCNGC 5 cut(s) 48, 299, 534, 846, 1287
BlsI GCNGC 5 cut(s) 49, 300, 535, 847, 1288
Bme1390I CCNGG 2 cut(s) 732, 933
BmgT120I GGNCC 2 cut(s) 8, 396
BmiI GGNNCC 2 cut(s) 855, 924
BmrFI CCNGG 2 cut(s) 732, 933
BmrI ACTGGG 3 cut(s) 614, 771, 882
BmsI GCATC 5 cut(s) 96, 148, 213, 967, 1061
BmuI ACTGGG 3 cut(s) 614, 771, 882
BpiI GAAGAC 1 cut(s) 64
BplI GAGNNNNNCTC 2 cut(s) 520, 552
BpmI CTGGAG 1 cut(s) 753
Bpu10I CCTNAGC 1 cut(s) 849
BpuEI CTTGAG 1 cut(s) 1109
BsaHI GRCGYC 1 cut(s) 572
BsaJI CCNNGG 4 cut(s) 178, 1173, 1232, 1346
BsaWI WCCGGW 1 cut(s) 973
Bsc4I CCNNNNNNNGG 7 cut(s) 16, 102, 146, 393, 452, 798, 932
Bse1I ACTGG 4 cut(s) 218, 620, 766, 877
Bse3DI GCAATG 1 cut(s) 1366
BseAI TCCGGA 1 cut(s) 973
BseBI CCWGG 2 cut(s) 732, 933
BseDI CCNNGG 4 cut(s) 178, 1173, 1232, 1346
BseGI GGATG 4 cut(s) 25, 111, 517, 832
BseLI CCNNNNNNNGG 7 cut(s) 16, 102, 146, 393, 452, 798, 932
BseMI GCAATG 1 cut(s) 1366
BseMII CTCAG 2 cut(s) 840, 1203
BseNI ACTGG 4 cut(s) 218, 620, 766, 877
BseRI GAGGAG 3 cut(s) 179, 1151, 1229
BseXI GCAGC 4 cut(s) 285, 520, 832, 1273
BsgI GTGCAG 1 cut(s) 1137
Bsh1236I CGCG 1 cut(s) 1063
BshFI GGCC 4 cut(s) 9, 63, 398, 813
BsiHKAI GWGCWC 1 cut(s) 1036
BsiSI CCGG 2 cut(s) 60, 974
BslI CCNNNNNNNGG 7 cut(s) 16, 102, 146, 393, 452, 798, 932
BsmAI GTCTC 3 cut(s) 198, 452, 729
BsmI GAATGC 1 cut(s) 359
BsnI GGCC 4 cut(s) 9, 63, 398, 813
Bsp1286I GDGCHC 1 cut(s) 1036
Bsp13I TCCGGA 1 cut(s) 973
Bsp143I GATC 4 cut(s) 92, 340, 361, 1099
Bsp19I CCATGG 1 cut(s) 1346
BspACI CCGC 4 cut(s) 48, 102, 373, 1368
BspANI GGCC 4 cut(s) 9, 63, 398, 813
BspCNI CTCAG 2 cut(s) 841, 1204
BspEI TCCGGA 1 cut(s) 973
BspFNI CGCG 1 cut(s) 1063
BspHI TCATGA 1 cut(s) 115
BspLI GGNNCC 2 cut(s) 855, 924
BspMAI CTGCAG 1 cut(s) 303
BspMI ACCTGC 1 cut(s) 496
BspPI GGATC 3 cut(s) 87, 348, 356
BspQI GCTCTTC 2 cut(s) 20, 1118
BspTI CTTAAG 1 cut(s) 644
BsrDI GCAATG 1 cut(s) 1366
BsrI ACTGG 4 cut(s) 218, 620, 766, 877
BssECI CCNNGG 4 cut(s) 178, 1173, 1232, 1346
BssMI GATC 4 cut(s) 92, 340, 361, 1099
BssNI GRCGYC 1 cut(s) 572
BssSI CACGAG 1 cut(s) 633
BssT1I CCWWGG 2 cut(s) 1173, 1346
Bst2BI CACGAG 1 cut(s) 633
Bst2UI CCWGG 2 cut(s) 732, 933
Bst4CI ACNGT 4 cut(s) 209, 1031, 1233, 1283
Bst6I CTCTTC 4 cut(s) 20, 270, 933, 1118
BstACI GRCGYC 1 cut(s) 572
BstAFI CTTAAG 1 cut(s) 644
BstC8I GCNNGC 1 cut(s) 811
BstDEI CTNAG 4 cut(s) 664, 849, 858, 1212
BstDSI CCRYGG 2 cut(s) 1232, 1346
BstENI CCTNNNNNAGG 1 cut(s) 930
BstF5I GGATG 4 cut(s) 25, 111, 517, 832
BstFNI CGCG 1 cut(s) 1063
BstH2I RGCGCY 1 cut(s) 644
BstHHI GCGC 2 cut(s) 643, 1071
BstKTI GATC 4 cut(s) 95, 343, 364, 1102
BstMAI GTCTC 3 cut(s) 198, 452, 729
BstMBI GATC 4 cut(s) 92, 340, 361, 1099
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstNI CCWGG 2 cut(s) 732, 933
BstSCI CCNGG 2 cut(s) 730, 931
BstSFI CTRYAG 1 cut(s) 299
BstUI CGCG 1 cut(s) 1063
BstV1I GCAGC 4 cut(s) 285, 520, 832, 1273
BstV2I GAAGAC 1 cut(s) 64
BstX2I RGATCY 2 cut(s) 340, 361
BstXI CCANNNNNNTGG 1 cut(s) 794
BstYI RGATCY 2 cut(s) 340, 361
BsuRI GGCC 4 cut(s) 9, 63, 398, 813
BtgI CCRYGG 2 cut(s) 1232, 1346
BtsCI GGATG 4 cut(s) 25, 111, 517, 832
BtsIMutI CAGTG 1 cut(s) 1036
BveI ACCTGC 1 cut(s) 496
Cac8I GCNNGC 1 cut(s) 811
CaiI CAGNNNCTG 1 cut(s) 213
CciI TCATGA 1 cut(s) 115
CfoI GCGC 2 cut(s) 643, 1071
Cfr13I GGNCC 2 cut(s) 8, 396
Csp6I GTAC 2 cut(s) 382, 994
CviQI GTAC 2 cut(s) 382, 994
DdeI CTNAG 4 cut(s) 664, 849, 858, 1212
DpnI GATC 4 cut(s) 94, 342, 363, 1101
DpnII GATC 4 cut(s) 92, 340, 361, 1099
DrdI GACNNNNNNGTC 1 cut(s) 1247
DseDI GACNNNNNNGTC 1 cut(s) 1247
EaeI YGGCCR 1 cut(s) 811
Eam1104I CTCTTC 4 cut(s) 20, 270, 933, 1118
EarI CTCTTC 4 cut(s) 20, 270, 933, 1118
Eco130I CCWWGG 2 cut(s) 1173, 1346
EcoNI CCTNNNNNAGG 1 cut(s) 930
EcoRII CCWGG 2 cut(s) 730, 931
EcoT14I CCWWGG 2 cut(s) 1173, 1346
ErhI CCWWGG 2 cut(s) 1173, 1346
FauI CCCGC 1 cut(s) 95
FblI GTMKAC 1 cut(s) 408
Fnu4HI GCNGC 5 cut(s) 48, 299, 534, 846, 1287
FokI GGATG 4 cut(s) 32, 118, 504, 839
Fsp4HI GCNGC 5 cut(s) 48, 299, 534, 846, 1287
FspBI CTAG 1 cut(s) 596
GlaI GCGC 2 cut(s) 642, 1070
GluI GCNGC 5 cut(s) 48, 299, 534, 846, 1287
GsuI CTGGAG 1 cut(s) 753
HaeII RGCGCY 1 cut(s) 644
HaeIII GGCC 4 cut(s) 9, 63, 398, 813
HapII CCGG 2 cut(s) 60, 974
HhaI GCGC 2 cut(s) 643, 1071
Hin1I GRCGYC 1 cut(s) 572
Hin6I GCGC 2 cut(s) 641, 1069
HinP1I GCGC 2 cut(s) 641, 1069
HincII GTYRAC 1 cut(s) 1209
HindII GTYRAC 1 cut(s) 1209
HinfI GANTC 6 cut(s) 262, 725, 751, 887, 1058, 1304
HpaI GTTAAC 1 cut(s) 1209
HpaII CCGG 2 cut(s) 60, 974
HphI GGTGA 5 cut(s) 167, 271, 554, 720, 1250
Hpy166II GTNNAC 7 cut(s) 382, 409, 616, 694, 996, 1188, 1209
Hpy188I TCNGA 5 cut(s) 244, 710, 756, 1057, 1303
Hpy188III TCNNGA 4 cut(s) 116, 140, 608, 974
Hpy8I GTNNAC 7 cut(s) 382, 409, 616, 694, 996, 1188, 1209
HpyAV CCTTC 3 cut(s) 113, 705, 911
HpyCH4III ACNGT 4 cut(s) 209, 1031, 1233, 1283
HpyCH4IV ACGT 1 cut(s) 572
HpyCH4V TGCA 8 cut(s) 88, 161, 226, 301, 500, 1007, 1118, 1289
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpyF3I CTNAG 4 cut(s) 664, 849, 858, 1212
HpySE526I ACGT 1 cut(s) 572
Hsp92I GRCGYC 1 cut(s) 572
HspAI GCGC 2 cut(s) 641, 1069
Kpn2I TCCGGA 1 cut(s) 973
KspAI GTTAAC 1 cut(s) 1209
Kzo9I GATC 4 cut(s) 92, 340, 361, 1099
LguI GCTCTTC 2 cut(s) 20, 1118
LmnI GCTCC 2 cut(s) 806, 1039
Lsp1109I GCAGC 4 cut(s) 285, 520, 832, 1273
LweI GCATC 5 cut(s) 96, 148, 213, 967, 1061
MaeI CTAG 1 cut(s) 596
MaeII ACGT 1 cut(s) 572
MaeIII GTNAC 6 cut(s) 209, 259, 568, 908, 1219, 1238
MalI GATC 4 cut(s) 94, 342, 363, 1101
MboI GATC 4 cut(s) 92, 340, 361, 1099
MfeI CAATTG 2 cut(s) 1290, 1332
MflI RGATCY 2 cut(s) 340, 361
MhlI GDGCHC 1 cut(s) 1036
MluCI AATT 7 cut(s) 590, 895, 941, 986, 1042, 1290, 1332
MlyI GAGTC 3 cut(s) 256, 1052, 1298
MmeI TCCRAC 2 cut(s) 318, 604
MroI TCCGGA 1 cut(s) 973
MroXI GAANNNNTTC 1 cut(s) 927
MseI TTAA 5 cut(s) 441, 474, 645, 944, 1208
MslI CAYNNNNRTG 2 cut(s) 743, 1195
MspCI CTTAAG 1 cut(s) 644
MspI CCGG 2 cut(s) 60, 974
MspR9I CCNGG 2 cut(s) 732, 933
MunI CAATTG 2 cut(s) 1290, 1332
Mva1269I GAATGC 1 cut(s) 359
MvaI CCWGG 2 cut(s) 732, 933
MvnI CGCG 1 cut(s) 1063
MwoI GCNNNNNNNGC 1 cut(s) 36
NcoI CCATGG 1 cut(s) 1346
NdeII GATC 4 cut(s) 92, 340, 361, 1099
NlaIV GGNNCC 2 cut(s) 855, 924
NmuCI GTSAC 4 cut(s) 259, 568, 908, 1238
PagI TCATGA 1 cut(s) 115
PciSI GCTCTTC 2 cut(s) 20, 1118
PctI GAATGC 1 cut(s) 359
PdmI GAANNNNTTC 1 cut(s) 927
PfeI GAWTC 3 cut(s) 725, 751, 887
PflMI CCANNNNNTGG 1 cut(s) 393
PfoI TCCNGGA 1 cut(s) 931
PkrI GCNGC 5 cut(s) 49, 300, 535, 847, 1288
PleI GAGTC 3 cut(s) 256, 1052, 1298
PpsI GAGTC 3 cut(s) 256, 1052, 1298
PsiI TTATAA 2 cut(s) 134, 840
Psp6I CCWGG 2 cut(s) 730, 931
PspGI CCWGG 2 cut(s) 730, 931
PspN4I GGNNCC 2 cut(s) 855, 924
PspPI GGNCC 2 cut(s) 8, 396
PstI CTGCAG 1 cut(s) 303
PstNI CAGNNNCTG 1 cut(s) 213
PsuI RGATCY 2 cut(s) 340, 361
RsaI GTAC 2 cut(s) 383, 995
RsaNI GTAC 2 cut(s) 382, 994
RseI CAYNNNNRTG 2 cut(s) 743, 1195
SapI GCTCTTC 2 cut(s) 20, 1118
SaqAI TTAA 5 cut(s) 441, 474, 645, 944, 1208
SatI GCNGC 5 cut(s) 48, 299, 534, 846, 1287
Sau3AI GATC 4 cut(s) 92, 340, 361, 1099
Sau96I GGNCC 2 cut(s) 8, 396
SchI GAGTC 3 cut(s) 256, 1052, 1298
ScrFI CCNGG 2 cut(s) 732, 933
SduI GDGCHC 1 cut(s) 1036
SfaNI GCATC 5 cut(s) 96, 148, 213, 967, 1061
SfcI CTRYAG 1 cut(s) 299
SmiMI CAYNNNNRTG 2 cut(s) 743, 1195
SmlI CTYRAG 2 cut(s) 644, 1088
SmoI CTYRAG 2 cut(s) 644, 1088
Sse9I AATT 7 cut(s) 590, 895, 941, 986, 1042, 1290, 1332
SsiI CCGC 4 cut(s) 48, 102, 373, 1368
SspI AATATT 1 cut(s) 326
SspMI CTAG 1 cut(s) 596
StyD4I CCNGG 2 cut(s) 730, 931
StyI CCWWGG 2 cut(s) 1173, 1346
TaaI ACNGT 4 cut(s) 209, 1031, 1233, 1283
TaiI ACGT 1 cut(s) 575
TaqI TCGA 1 cut(s) 1203
TasI AATT 7 cut(s) 590, 895, 941, 986, 1042, 1290, 1332
TatI WGTACW 1 cut(s) 993
TauI GCSGC 1 cut(s) 50
TfiI GAWTC 3 cut(s) 725, 751, 887
Tru1I TTAA 5 cut(s) 441, 474, 645, 944, 1208
Tru9I TTAA 5 cut(s) 441, 474, 645, 944, 1208
TscAI CASTG 1 cut(s) 1036
TseFI GTSAC 4 cut(s) 259, 568, 908, 1238
TseI GCWGC 4 cut(s) 298, 533, 845, 1286
Tsp45I GTSAC 4 cut(s) 259, 568, 908, 1238
TspDTI ATGAA 5 cut(s) 132, 366, 564, 834, 908
TspGWI ACGGA 2 cut(s) 58, 85
TspRI CASTG 1 cut(s) 1036
Van91I CCANNNNNTGG 1 cut(s) 393
Vha464I CTTAAG 1 cut(s) 644
XagI CCTNNNNNAGG 1 cut(s) 930
XapI RAATTY 3 cut(s) 590, 986, 1042
XmiI GTMKAC 1 cut(s) 408
XmnI GAANNNNTTC 1 cut(s) 927
XspI CTAG 1 cut(s) 596
ZraI GACGTC 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.